-
1
-
-
0008863560
-
Some factors in the interpretation of the protein denaturation
-
Kauzmann, W. 1959. Some factors in the interpretation of the protein denaturation. Adv. Protein Chem. 14: 1-63.
-
(1959)
Adv. Protein Chem.
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
-
2
-
-
0025876740
-
Protein folding: Local structures, domains, subunits, and assemblies
-
Jaenicke, R. 1991. Protein folding: local structures, domains, subunits, and assemblies. Biochemistry. 30: 3147-3161.
-
(1991)
Biochemistry
, vol.30
, pp. 3147-3161
-
-
Jaenicke, R.1
-
4
-
-
0001692184
-
Molecular motion and structure of aqueous mixtures with nonelectrolytes as studied by nuclear magnetic relaxation methods
-
Goldammer, V., and H. G. Hertz. 1.970. Molecular motion and structure of aqueous mixtures with nonelectrolytes as studied by nuclear magnetic relaxation methods. J. Phys. Chem. 74: 3734-3755.
-
(1970)
J. Phys. Chem.
, vol.74
, pp. 3734-3755
-
-
Goldammer, V.1
Hertz, H.G.2
-
5
-
-
33847087173
-
Influence of hydrophobic solutes on the dynamic behavior of water
-
Hallenga, K., J. R. Grigera, and H. J. C. Berendsen. 1980. Influence of hydrophobic solutes on the dynamic behavior of water. J. Phys. Chem. 84: 2381-2390.
-
(1980)
J. Phys. Chem.
, vol.84
, pp. 2381-2390
-
-
Hallenga, K.1
Grigera, J.R.2
Berendsen, H.J.C.3
-
6
-
-
34948906747
-
Observation of immobilized water molecules around hydrophobic groups
-
Rezus, Y. L. A., and H. J. Bakker. 2007. Observation of immobilized water molecules around hydrophobic groups. Phys. Rev. Lett. 99: 148301.
-
(2007)
Phys. Rev. Lett.
, vol.99
, pp. 148301
-
-
Rezus, Y.L.A.1
Bakker, H.J.2
-
7
-
-
0004152486
-
-
Royal Society of Chemistry, Cambridge, UK
-
Franks, F. 2000. Water; A Matrix of Life. Royal Society of Chemistry, Cambridge, UK.
-
(2000)
Water; A Matrix of Life
-
-
Franks, F.1
-
10
-
-
4243468632
-
Structure of supercooled and glassy water under pressure
-
Starr, F. W., M. C. Bellissent-Funel, and H. E. Stanley. 1999. Structure of supercooled and glassy water under pressure. Phys. Rev. E. Stat. Phys. Plasmas Fluids Relat. Interdiscip. Topics. 60: 1084-1087. (Pubitemid 129691264)
-
(1999)
Physical Review e - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics
, vol.60
, Issue.1
, pp. 1084-1087
-
-
Starr, F.W.1
Bellissent-Funel, M.-C.2
Stanley, H.E.3
-
12
-
-
0006931334
-
The effect of electrolyte on the viscosity of water under pressure
-
Home, R. A., and D. S. Johnson. 1966. The effect of electrolyte on the viscosity of water under pressure. J. Phys. Chem. 70: 2182-2190.
-
(1966)
J. Phys. Chem.
, vol.70
, pp. 2182-2190
-
-
Home, R.A.1
Johnson, D.S.2
-
14
-
-
0015236387
-
Reversible pressure-temperature denaturation of chymotrypsinogen
-
Hawley, S. A. 1971. Reversible pressure-temperature denaturation of chymotrypsinogen. Biochemistry. 10: 2436-2442.
-
(1971)
Biochemistry
, vol.10
, pp. 2436-2442
-
-
Hawley, S.A.1
-
15
-
-
0037171132
-
Pressure-temperature phase diagrams of biomolecules
-
Smeller, L. 2002. Pressure-temperature phase diagrams of biomolecules. Bioehim. Biophys. Acta. 1595: 11-29.
-
(2002)
Bioehim. Biophys. Acta.
, vol.1595
, pp. 11-29
-
-
Smeller, L.1
-
16
-
-
44449132615
-
Temperature and pressure dependence of protein stability: The engineered fluorescein-binding lipocalin FluA shows an elliptic phase diagram
-
DOI 10.1073/pnas.0710409105
-
Wiedersich, J., S. Köhler, and J. Friedrich. 2008. Temperature and pressure dependence of protein stability: the engineered fluorescein-binding lipocalin FluA shows an elliptic phase diagram. Proc. Natl, Acad. Sci. USA. 105: 5756-5761. (Pubitemid 351758445)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.15
, pp. 5756-5761
-
-
Wiedersich, J.1
Kohler, S.2
Skerra, A.3
Friedrich, J.4
-
17
-
-
0242352685
-
Possible mechanism for cold denaturation of proteins at high pressure
-
Marqués, M. I., J. M. Borreguero, N. V. Dokholyan. 2003. Possible mechanism for cold denaturation of proteins at high pressure. Phys. Rev. Lett. 91: 138103.
-
(2003)
Phys. Rev. Lett.
, vol.91
, pp. 138103
-
-
Marqués, M.I.1
Borreguero, J.M.2
Dokholyan, N.V.3
-
18
-
-
0032539604
-
The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins
-
Hummer, G., S. Garde, M. E. Paulaitis. 1998. The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins. Proc. Natl. Acad. Sci. USA. 95: 1552-1555.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1552-1555
-
-
Hummer, G.1
Garde, S.2
Paulaitis, M.E.3
-
19
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein folding: A synthesis
-
Bryngelson, J. D., J. N. Onuchic, P. G. Wolynes. 1995. Funnels, pathways, and the energy landscape of protein folding: a synthesis. Proteins. 21: 167-195.
-
(1995)
Proteins
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
20
-
-
77951642190
-
Studying the unfolding kinetics of proteins under pressure using long molecular dynamic simulation, runs
-
Chara, O., A. N. MacCarthy, and J. R. Grigera. 2007. Studying the unfolding kinetics of proteins under pressure using long molecular dynamic simulation, runs. J. Biol. Phys. 33: 523-539.
-
(2007)
J. Biol. Phys.
, vol.33
, pp. 523-539
-
-
Chara, O.1
MacCarthy, A.N.2
Grigera, J.R.3
-
22
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
DOI 10.1007/S008940100045
-
Lindahl, E., B. Hess, and D. van der Spoel. 2001. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7:306-317. (Pubitemid 36153547)
-
(2001)
Journal of Molecular Modeling
, vol.7
, Issue.8
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
23
-
-
2142813682
-
Computer simulation of molecular dynamics: Methodology, applications, and perspectives in chemistry
-
van Gunsteren, W. F., and H. J. C. Berendsen. 1990. Computer simulation of molecular dynamics: methodology, applications, and perspectives in chemistry. Angew. Chem. Int. Ed. Engl. 29: 992-1023.
-
(1990)
Angew. Chem. Int. Ed. Engl.
, vol.29
, pp. 992-1023
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
25
-
-
0011746241
-
A molecular dynamics study of the decane/water interface
-
Buuren, A. R., S. J. Marrink, and H. J. C. Berendsen, 1993. A molecular dynamics study of the decane/water interface. J. Phys. Chem. 97: 9206-9212.
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 9206-9212
-
-
Buuren, A.R.1
Marrink, S.J.2
Berendsen, H.J.C.3
-
26
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
Hess, B., H. Bekker, J. G. E. M. Fraaije. 1997. LINCS: a linear constraint solver for molecular simulations. J. Comput. Chem. 18: 1463-1472.
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Fraaije, J.G.E.M.3
-
27
-
-
84986440341
-
SETTLE: An analytical version of the SHAKE and RATTLE algorithms for rigid water models
-
Miyamoto, S., and P. A. Kollman. 1992. SETTLE: an analytical version of the SHAKE and RATTLE algorithms for rigid water models. J. Cormput. Chem. 13: 952-962.
-
(1992)
J. Cormput. Chem.
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
29
-
-
33748791718
-
Hydration thermodynamic properties of amino acid analogues: A systematic comparison of biomolecular force fields and water models
-
DOI 10.1021/jp0641029
-
Hess, B., and N. F. A. van der Vegt. 2006. Hydration thermodynamic properties of amino acid analogues: a systematic comparison of biomolecular force fields and water models. J. Phys. Chem. B. 110: 17616-17626. (Pubitemid 44412512)
-
(2006)
Journal of Physical Chemistry B
, vol.110
, Issue.35
, pp. 17616-17626
-
-
Hess, B.1
Van Der Vegt, N.F.A.2
-
30
-
-
14944344456
-
Prediction of the PVT properties of water over wide range of temperatures and pressures from molecular dynamics simulation
-
DOI 10.1016/j.pepi.2004.11.003, PII S0031920104003930
-
Zhang, Z., and Z. Duan. 2005. Prediction of the PVT properties of water over wide range of temperatures and pressures from molecular dynamics simulation, Phys. Earth Planet. Inter. 149: 335-354. (Pubitemid 40373974)
-
(2005)
Physics of the Earth and Planetary Interiors
, vol.149
, Issue.3-4
, pp. 335-354
-
-
Zhang, Z.1
Duan, Z.2
-
31
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H. J. C., J. P. M. A. Postma, J. R. Haak. 1984. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81: 3684-3690.
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.A.2
Haak, J.R.3
-
32
-
-
0027723541
-
The interatomic structure of water at supercritical temperatures
-
Postorino, P., R. H. Tromp, G. W. Nielson. 1993. The interatomic structure of water at supercritical temperatures. Nature. 366: 668-670.
-
(1993)
Nature
, vol.366
, pp. 668-670
-
-
Postorino, P.1
Tromp, R.H.2
Nielson, G.W.3
-
33
-
-
0035905815
-
Relationship between structural order and the anomalies of liquid water
-
Errington, J. R., and P. G. Debenedetti. 2001. Relationship between structural order and the anomalies of liquid water. Nature. 409: 31.8-321.
-
(2001)
Nature
, vol.409
, pp. 318-321
-
-
Errington, J.R.1
Debenedetti, P.G.2
-
34
-
-
0002619244
-
Effect of high salt concentrations on water structure
-
Leberman, R., and A. K. Soper. 1995. Effect of high salt concentrations on water structure. Nature. 378: 364-366.
-
(1995)
Nature
, vol.378
, pp. 364-366
-
-
Leberman, R.1
Soper, A.K.2
-
35
-
-
34548689627
-
Clustering of Lennard-Jones particles in water: Temperature and pressure effects
-
Ferrara, C. G., A. N. MacCarthy, and J. R. Grigera. 2007. Clustering of Lennard-Jones particles in water: temperature and pressure effects. J. Chem. Phys. 127: 104502.
-
(2007)
J. Chem. Phys.
, vol.127
, pp. 104502
-
-
Ferrara, C.G.1
MacCarthy, A.N.2
Grigera, J.R.3
-
36
-
-
28944435120
-
Effect of pressure on the conformation of proteins. A molecular dynamics simulation of lysozyme
-
DOI 10.1016/j.jmgm.2005.09.007, PII S1093326305001063
-
McCarthy, A. N., and J. R. Grigera. 2006. Effect of pressure on the conformation of proteins. A molecular dynamics simulation of lysozyme. J. Mol. Graph. Model. 24: 254-261. (Pubitemid 41786039)
-
(2006)
Journal of Molecular Graphics and Modelling
, vol.24
, Issue.4
, pp. 254-261
-
-
McCarthy, A.N.1
Grigera, J.R.2
-
37
-
-
84986483798
-
The double cube lattice method: Efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies
-
Eisenhaber, F., F. Lijnzaad, M. Scharf. 1995. The double cube lattice method: efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies. J. Comput. Chem. 16: 273-284.
-
(1995)
J. Comput. Chem.
, vol.16
, pp. 273-284
-
-
Eisenhaber, F.1
Lijnzaad, F.2
Scharf, M.3
-
39
-
-
0141654001
-
Highly fluctuating protein structures revealed by variable-pressure nuclear magnetic resonance
-
DOI 10.1021/bi034722p
-
Akasaka, K. 2003. Highly fluctuating protein structures revealed by variable-pressure nuclear magnetic resonance. Biochemistry. 42: 10875-10885. (Pubitemid 37174377)
-
(2003)
Biochemistry
, vol.42
, Issue.37
, pp. 10875-10885
-
-
Akasaka, K.1
-
40
-
-
0036291143
-
High pressure NMR reveals that apomyoglobin is an equilibrium mixture from the native to the unfolded
-
Kitahara, R., H. Yamada, P. E. Wright. 2002. High pressure NMR reveals that apomyoglobin is an equilibrium mixture from the native to the unfolded. J. Mol. Biol. 320: 311-319.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 311-319
-
-
Kitahara, R.1
Yamada, H.2
Wright, P.E.3
-
41
-
-
33646472558
-
Pressure denaturation of apomyoglobin: A molecular dynamics simulation study
-
McCarthy, A. N., and J. R. Grigera. 2006. Pressure denaturation of apomyoglobin: a molecular dynamics simulation study. Bioehim, Biophys. Acta. 1764: 506-515.
-
(2006)
Bioehim, Biophys. Acta.
, vol.1764
, pp. 506-515
-
-
McCarthy, A.N.1
Grigera, J.R.2
-
42
-
-
36849150819
-
Thermodynamics of unfolding
-
Kauzmann, W. 1987. Thermodynamics of unfolding. Nature. 325: 763-764.
-
(1987)
Nature
, vol.325
, pp. 763-764
-
-
Kauzmann, W.1
-
43
-
-
22944489870
-
Hydrophobic effects on partial molar volume
-
DOI 10.1063/1.1854626, 094509
-
Imai, T., and F. Hirata. 2005. Hydrophobic effect on partial molar volume. J. Chem. Phys. 122: 094509. (Pubitemid 41042158)
-
(2005)
Journal of Chemical Physics
, vol.122
, Issue.9
, pp. 1-6
-
-
Imai, T.1
Hirata, F.2
-
44
-
-
33646012000
-
A molecular dynamics simulation of SNASE and its hydration shell at high temperature and high pressure
-
Smolin, N., and R. Winter. 2006. A molecular dynamics simulation of SNASE and its hydration shell at high temperature and high pressure. Bioehim. Biophys. Acta. 1764: 522-534.
-
(2006)
Bioehim. Biophys. Acta.
, vol.1764
, pp. 522-534
-
-
Smolin, N.1
Winter, R.2
-
45
-
-
68849115938
-
Quantifying water density fluctuations and compressibility of hydration shells of hydrophobic solutes and proteins
-
Sarupria, S., and S. Garde. 2009. Quantifying water density fluctuations and compressibility of hydration shells of hydrophobic solutes and proteins. Phys. Rev. Lett. 103: 037803.
-
(2009)
Phys. Rev. Lett.
, vol.103
, pp. 037803
-
-
Sarupria, S.1
Garde, S.2
-
46
-
-
56649083699
-
Computing the stability diagram of the Trp- Cage miniprotein
-
Paschek, D., S. Hempel, and A. E. Garcia. 2008. Computing the stability diagram of the Trp- Cage miniprotein. Proc. Natl. Acad. Sci. USA. 118: 17754-17759.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.118
, pp. 17754-17759
-
-
Paschek, D.1
Hempel, S.2
Garcia, A.E.3
-
47
-
-
44949259971
-
Mechanistic elements of protein cold denaturation
-
Lopez, C. F., R. K. Darst, and P. J. Rossky. 2008. Mechanistic elements of protein cold denaturation. J. Phys. Chem. B. 112: 5961-5967.
-
(2008)
J. Phys. Chem. B.
, vol.112
, pp. 5961-5967
-
-
Lopez, C.F.1
Darst, R.K.2
Rossky, P.J.3
-
48
-
-
36749086935
-
Pressure and salt effects in simulated water: Two sides of the same coin?
-
Holzmann, J., R. Ludwig, A. Geiger. 2007. Pressure and salt effects in simulated water: two sides of the same coin? Angew. Chem. Int. Ed. 46: 8907-8911.
-
(2007)
Angew. Chem. Int. Ed.
, vol.46
, pp. 8907-8911
-
-
Holzmann, J.1
Ludwig, R.2
Geiger, A.3
-
49
-
-
0032516448
-
562 examined by the dependence of hydrogen exchange on hydrostatic pressure
-
DOI 10.1021/bi980894o
-
Fuentes, E., and J. Wand. 1998. Local dynamics of apocytochrome b562 examined by the dependence of hydrogen exchange on hydration pressure. Biochemistry. 47: 9877-9883. (Pubitemid 28366340)
-
(1998)
Biochemistry
, vol.37
, Issue.28
, pp. 9877-9883
-
-
Fuentes, E.J.1
Wand, A.J.2
-
50
-
-
0344406172
-
Pressure-dependent changes in the solution structure of hen egg-white lysozyme
-
Refaee, M., T. Tezuka, M. P. Williamson. 2003. Pressure-dependent changes in the solution structure of hen egg-white lysozyme. J. Mol. Biol. 327: 857-865.
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 857-865
-
-
Refaee, M.1
Tezuka, T.2
Williamson, M.P.3
-
51
-
-
77951641723
-
Pressure versus heatinduced unfolding of ribonuclease A: The case of hydrophobic interactions within a chain-folding initiation site
-
Torrent, J., J. P. Connelly, M. Vilanova. 1.999. Pressure versus heatinduced unfolding of ribonuclease A: the case of hydrophobic interactions within a chain-folding initiation site. Biochemistry. 42: 5952-5961.
-
(1999)
Biochemistry
, vol.42
, pp. 5952-5961
-
-
Torrent, J.1
Connelly, J.P.2
Vilanova, M.3
-
52
-
-
0035479686
-
Filling a cavity dramatically increases pressure stability of the c-Myb R2 subdomain
-
Lassalle, M. W., H. Yamada, K. Akasaka. 2001. Filling a cavity dramatically increases pressure stability of the c-Myb R2 subdomain. Proteins. 45: 96-101.
-
(2001)
Proteins
, vol.45
, pp. 96-101
-
-
Lassalle, M.W.1
Yamada, H.2
Akasaka, K.3
-
53
-
-
0030497324
-
Mechanism of high pressure denaturation of proteins
-
DOI 10.1006/fstl.1996.0118
-
Hayakawa, I., Y. Y. Linko, and P. Linko. 1996. Mechanism of high pressure denaturation of proteins. Lebensm. Wiss. Technol. 29: 756-762. (Pubitemid 126162602)
-
(1996)
LWT - Food Science and Technology
, vol.29
, Issue.8
, pp. 756-762
-
-
Hayakawa, I.1
Linko, Y.-Y.2
Linko, P.3
|