메뉴 건너뛰기




Volumn 7, Issue 7, 2012, Pages

Gene expression commons: An open platform for absolute gene expression profiling

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; CELL DIFFERENTIATION; CELL POPULATION; COMPUTER INTERFACE; CONTROLLED STUDY; FEMALE; GENE EXPRESSION COMMONS; GENE EXPRESSION PROFILING; GENE PROBE; HEMATOPOIETIC STEM CELL; HEMATOPOIETIC SYSTEM; HUMAN; HUMAN CELL; INFORMATION PROCESSING; INTERNET; MALE; MICROARRAY ANALYSIS; MOUSE; NONHUMAN; REFERENCE DATABASE;

EID: 84864008966     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0040321     Document Type: Article
Times cited : (204)

References (28)
  • 2
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 3
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 5
    • 77956902023 scopus 로고    scopus 로고
    • Comprehensive methylome map of lineage commitment from haematopoietic progenitors
    • Ji H, Ehrlich LI, Seita J, Murakami P, Doi A, et al. (2010) Comprehensive methylome map of lineage commitment from haematopoietic progenitors. Nature 467: 338-342.
    • (2010) Nature , vol.467 , pp. 338-342
    • Ji, H.1    Ehrlich, L.I.2    Seita, J.3    Murakami, P.4    Doi, A.5
  • 6
    • 70350093398 scopus 로고    scopus 로고
    • Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development
    • Inlay MA, Bhattacharya D, Sahoo D, Serwold T, Seita J, et al. (2009) Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development. Genes Dev 23: 2376-2381.
    • (2009) Genes Dev , vol.23 , pp. 2376-2381
    • Inlay, M.A.1    Bhattacharya, D.2    Sahoo, D.3    Serwold, T.4    Seita, J.5
  • 7
    • 78650444882 scopus 로고    scopus 로고
    • Association of a leukemic stem cell gene expression signature with clinical outcomes in acute myeloid leukemia
    • Gentles AJ, Plevritis SK, Majeti R, Alizadeh AA, (2010) Association of a leukemic stem cell gene expression signature with clinical outcomes in acute myeloid leukemia. JAMA 304: 2706-2715.
    • (2010) JAMA , vol.304 , pp. 2706-2715
    • Gentles, A.J.1    Plevritis, S.K.2    Majeti, R.3    Alizadeh, A.A.4
  • 8
    • 62549160065 scopus 로고    scopus 로고
    • Dysregulated gene expression networks in human acute myelogenous leukemia stem cells
    • Majeti R, Becker MW, Tian Q, Lee TL, Yan X, et al. (2009) Dysregulated gene expression networks in human acute myelogenous leukemia stem cells. Proc Natl Acad Sci U S A 106: 3396-3401.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 3396-3401
    • Majeti, R.1    Becker, M.W.2    Tian, Q.3    Lee, T.L.4    Yan, X.5
  • 9
    • 33750616028 scopus 로고    scopus 로고
    • A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
    • Katz S, Irizarry RA, Lin X, Tripputi M, Porter MW, (2006) A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database. BMC Bioinformatics 7: 464.
    • (2006) BMC Bioinformatics , vol.7 , pp. 464
    • Katz, S.1    Irizarry, R.A.2    Lin, X.3    Tripputi, M.4    Porter, M.W.5
  • 12
    • 1642377561 scopus 로고    scopus 로고
    • ONCOMINE: a cancer microarray database and integrated data-mining platform
    • Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, et al. (2004) ONCOMINE: a cancer microarray database and integrated data-mining platform. Neoplasia 6: 1-6.
    • (2004) Neoplasia , vol.6 , pp. 1-6
    • Rhodes, D.R.1    Yu, J.2    Shanker, K.3    Deshpande, N.4    Varambally, R.5
  • 13
    • 36048966491 scopus 로고    scopus 로고
    • FlyMine: an integrated database for Drosophila and Anopheles genomics
    • Lyne R, Smith R, Rutherford K, Wakeling M, Varley A, et al. (2007) FlyMine: an integrated database for Drosophila and Anopheles genomics. Genome Biol 8: R129.
    • (2007) Genome Biol , vol.8
    • Lyne, R.1    Smith, R.2    Rutherford, K.3    Wakeling, M.4    Varley, A.5
  • 14
    • 58149523839 scopus 로고    scopus 로고
    • EMAAS: an extensible grid-based rich internet application for microarray data analysis and management
    • Barton G, Abbott J, Chiba N, Huang DW, Huang Y, et al. (2008) EMAAS: an extensible grid-based rich internet application for microarray data analysis and management. BMC Bioinformatics 9: 493.
    • (2008) BMC Bioinformatics , vol.9 , pp. 493
    • Barton, G.1    Abbott, J.2    Chiba, N.3    Huang, D.W.4    Huang, Y.5
  • 16
    • 35748952199 scopus 로고    scopus 로고
    • A gene expression bar code for microarray data
    • Zilliox MJ, Irizarry RA, (2007) A gene expression bar code for microarray data. Nat Methods 4: 911-913.
    • (2007) Nat Methods , vol.4 , pp. 911-913
    • Zilliox, M.J.1    Irizarry, R.A.2
  • 17
    • 78651271261 scopus 로고    scopus 로고
    • The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes
    • McCall MN, Uppal K, Jaffee HA, Zilliox MJ, Irizarry RA, (2011) The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes. Nucleic Acids Res 39: D1011-1015.
    • (2011) Nucleic Acids Res , vol.39
    • McCall, M.N.1    Uppal, K.2    Jaffee, H.A.3    Zilliox, M.J.4    Irizarry, R.A.5
  • 19
    • 52649097448 scopus 로고    scopus 로고
    • The Immunological Genome Project: networks of gene expression in immune cells
    • Heng TS, Painter MW, (2008) The Immunological Genome Project: networks of gene expression in immune cells. Nat Immunol 9: 1091-1094.
    • (2008) Nat Immunol , vol.9 , pp. 1091-1094
    • Heng, T.S.1    Painter, M.W.2
  • 20
    • 34848896359 scopus 로고    scopus 로고
    • Elucidation of the phenotypic, functional, and molecular topography of a myeloerythroid progenitor cell hierarchy
    • Pronk CJ, Rossi DJ, Mansson R, Attema JL, Norddahl GL, et al. (2007) Elucidation of the phenotypic, functional, and molecular topography of a myeloerythroid progenitor cell hierarchy. Cell Stem Cell 1: 428-442.
    • (2007) Cell Stem Cell , vol.1 , pp. 428-442
    • Pronk, C.J.1    Rossi, D.J.2    Mansson, R.3    Attema, J.L.4    Norddahl, G.L.5
  • 21
    • 0037079712 scopus 로고    scopus 로고
    • Differential gene expression profiling of adult murine hematopoietic stem cells
    • Park IK, He Y, Lin F, Laerum OD, Tian Q, et al. (2002) Differential gene expression profiling of adult murine hematopoietic stem cells. Blood 99: 488-498.
    • (2002) Blood , vol.99 , pp. 488-498
    • Park, I.K.1    He, Y.2    Lin, F.3    Laerum, O.D.4    Tian, Q.5
  • 23
    • 0037438387 scopus 로고    scopus 로고
    • Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis
    • Akashi K, He X, Chen J, Iwasaki H, Niu C, et al. (2003) Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis. Blood 101: 383-389.
    • (2003) Blood , vol.101 , pp. 383-389
    • Akashi, K.1    He, X.2    Chen, J.3    Iwasaki, H.4    Niu, C.5
  • 24
    • 0037968549 scopus 로고    scopus 로고
    • Gene expression analysis of purified hematopoietic stem cells and committed progenitors
    • Terskikh AV, Miyamoto T, Chang C, Diatchenko L, Weissman IL, (2003) Gene expression analysis of purified hematopoietic stem cells and committed progenitors. Blood 102: 94-101.
    • (2003) Blood , vol.102 , pp. 94-101
    • Terskikh, A.V.1    Miyamoto, T.2    Chang, C.3    Diatchenko, L.4    Weissman, I.L.5
  • 27
    • 33749444296 scopus 로고    scopus 로고
    • Evidence for diversity in transcriptional profiles of single hematopoietic stem cells
    • Ramos CA, Bowman TA, Boles NC, Merchant AA, Zheng Y, et al. (2006) Evidence for diversity in transcriptional profiles of single hematopoietic stem cells. PLoS Genet 2: e159.
    • (2006) PLoS Genet , vol.2
    • Ramos, C.A.1    Bowman, T.A.2    Boles, N.C.3    Merchant, A.A.4    Zheng, Y.5
  • 28
    • 35848943273 scopus 로고    scopus 로고
    • Hematopoietic fingerprints: an expression database of stem cells and their progeny
    • Chambers SM, Boles NC, Lin KY, Tierney MP, Bowman TV, et al. (2007) Hematopoietic fingerprints: an expression database of stem cells and their progeny. Cell Stem Cell 1: 578-591.
    • (2007) Cell Stem Cell , vol.1 , pp. 578-591
    • Chambers, S.M.1    Boles, N.C.2    Lin, K.Y.3    Tierney, M.P.4    Bowman, T.V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.