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Volumn 12, Issue 7, 2013, Pages 3181-3192

Identification of human protein interaction domains using an ORFeome-based yeast two-hybrid fragment library

Author keywords

genome wide; human; protein domain; protein interaction; yeast two hybrid

Indexed keywords

PROTEIN;

EID: 84879914213     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr400047p     Document Type: Article
Times cited : (14)

References (60)
  • 4
    • 0037453510 scopus 로고    scopus 로고
    • Assembly of cell regulatory systems through protein interaction domains
    • Pawson, T.; Nash, P. Assembly of cell regulatory systems through protein interaction domains Science 2003, 300, 445-452
    • (2003) Science , vol.300 , pp. 445-452
    • Pawson, T.1    Nash, P.2
  • 5
    • 84864577164 scopus 로고    scopus 로고
    • The application of modular protein domains in proteomics
    • Jadwin, J. A.; Ogiue-Ikeda, M.; Machida, K. The application of modular protein domains in proteomics Febs Lett. 2012, 586, 2586-2596
    • (2012) Febs Lett. , vol.586 , pp. 2586-2596
    • Jadwin, J.A.1    Ogiue-Ikeda, M.2    Machida, K.3
  • 13
    • 84857780876 scopus 로고    scopus 로고
    • Evidence for network evolution in an Arabidopsis interactome map
    • Arabidopsis Interactome Mapping Consortium
    • Arabidopsis Interactome Mapping Consortium Evidence for network evolution in an Arabidopsis interactome map Science 2011, 333, 601-607
    • (2011) Science , vol.333 , pp. 601-607
  • 15
    • 78651344377 scopus 로고    scopus 로고
    • 3did: Identification and classification of domain-based interactions of known three-dimensional structure
    • Stein, A.; Céol, A.; Aloy, P. 3did: identification and classification of domain-based interactions of known three-dimensional structure Nucleic Acids Res. 2011, 39, D718-723
    • (2011) Nucleic Acids Res. , vol.39 , pp. 718-723
    • Stein, A.1    Céol, A.2    Aloy, P.3
  • 16
    • 78651277455 scopus 로고    scopus 로고
    • DOMINE: A comprehensive collection of known and predicted domain-domain interactions
    • Yellaboina, S.; Tasneem, A.; Zaykin, D. V.; Raghavachari, B.; Jothi, R. DOMINE: a comprehensive collection of known and predicted domain-domain interactions Nucleic Acids Res. 2011, 39, D730-735
    • (2011) Nucleic Acids Res. , vol.39 , pp. 730-735
    • Yellaboina, S.1    Tasneem, A.2    Zaykin, D.V.3    Raghavachari, B.4    Jothi, R.5
  • 18
    • 77954819629 scopus 로고    scopus 로고
    • Combinatorial Domain Hunting: Solving problems in protein expression
    • Littler, E. Combinatorial Domain Hunting: solving problems in protein expression Drug Discovery Today 2010, 15, 461-467
    • (2010) Drug Discovery Today , vol.15 , pp. 461-467
    • Littler, E.1
  • 21
    • 1542345539 scopus 로고    scopus 로고
    • Increasing specificity in high-throughput yeast two-hybrid experiments
    • Vidalain, P.-O.; Boxem, M.; Ge, H.; Li, S.; Vidal, M. Increasing specificity in high-throughput yeast two-hybrid experiments Methods 2004, 32, 363-370
    • (2004) Methods , vol.32 , pp. 363-370
    • Vidalain, P.-O.1    Boxem, M.2    Ge, H.3    Li, S.4    Vidal, M.5
  • 25
    • 77949440090 scopus 로고    scopus 로고
    • Improving the yeast two-hybrid system with permutated fusions proteins: The Varicella Zoster Virus interactome
    • Stellberger, T.; Häuser, R.; Baiker, A.; Pothineni, V.; Haas, J.; Uetz, P. Improving the yeast two-hybrid system with permutated fusions proteins: the Varicella Zoster Virus interactome Proteome Sci. 2010, 8, 8
    • (2010) Proteome Sci. , vol.8 , pp. 8
    • Stellberger, T.1    Häuser, R.2    Baiker, A.3    Pothineni, V.4    Haas, J.5    Uetz, P.6
  • 26
    • 84856304670 scopus 로고    scopus 로고
    • A Stringent Yeast Two-Hybrid Matrix Screening Approach for Protein-Protein Interaction Discovery
    • Suter, B. Wanker, E. E. Humana Press: Totowa, NJ
    • Worseck, J. M.; Grossmann, A.; Weimann, M.; Hegele, A.; Stelzl, U. A Stringent Yeast Two-Hybrid Matrix Screening Approach for Protein-Protein Interaction Discovery. In Two Hybrid Technologies; Suter, B.; Wanker, E. E., Eds.; Humana Press: Totowa, NJ, 2012; Vol. 812, pp 63-87.
    • (2012) Two Hybrid Technologies , vol.812 , pp. 63-87
    • Worseck, J.M.1    Grossmann, A.2    Weimann, M.3    Hegele, A.4    Stelzl, U.5
  • 29
    • 40949138261 scopus 로고    scopus 로고
    • Construction and characterization of a normalized yeast two-hybrid library derived from a human protein-coding clone collection
    • DeGrado-Warren, J.; Dufford, M.; Chen, J.; Bartel, P. L.; Shattuck, D.; Frech, G. C. Construction and characterization of a normalized yeast two-hybrid library derived from a human protein-coding clone collection BioTechniques 2008, 44, 265-273
    • (2008) BioTechniques , vol.44 , pp. 265-273
    • Degrado-Warren, J.1    Dufford, M.2    Chen, J.3    Bartel, P.L.4    Shattuck, D.5    Frech, G.C.6
  • 30
    • 64649106078 scopus 로고    scopus 로고
    • Yeast two-hybrid detection of integrase-host factor interactions
    • Rain, J.-C.; Cribier, A.; Gérard, A.; Emiliani, S.; Benarous, R. Yeast two-hybrid detection of integrase-host factor interactions Methods 2009, 47, 291-297
    • (2009) Methods , vol.47 , pp. 291-297
    • Rain, J.-C.1    Cribier, A.2    Gérard, A.3    Emiliani, S.4    Benarous, R.5
  • 38
    • 0030061120 scopus 로고    scopus 로고
    • Single amino acid substitutions in proteins of the armadillo gene family abolish their binding to alpha-catenin
    • Aberle, H.; Schwartz, H.; Hoschuetzky, H.; Kemler, R. Single amino acid substitutions in proteins of the armadillo gene family abolish their binding to alpha-catenin J. Biol. Chem. 1996, 271, 1520-1526
    • (1996) J. Biol. Chem. , vol.271 , pp. 1520-1526
    • Aberle, H.1    Schwartz, H.2    Hoschuetzky, H.3    Kemler, R.4
  • 41
    • 0029665852 scopus 로고    scopus 로고
    • Crystal structure of the p27Kip1 cyclin-dependent-kinase inhibitor bound to the cyclin A-Cdk2 complex
    • Russo, A. A.; Jeffrey, P. D.; Patten, A. K.; Massagué, J.; Pavletich, N. P. Crystal structure of the p27Kip1 cyclin-dependent-kinase inhibitor bound to the cyclin A-Cdk2 complex Nature 1996, 382, 325-331
    • (1996) Nature , vol.382 , pp. 325-331
    • Russo, A.A.1    Jeffrey, P.D.2    Patten, A.K.3    Massagué, J.4    Pavletich, N.P.5
  • 42
    • 0032541623 scopus 로고    scopus 로고
    • Structural basis for inhibition of the cyclin-dependent kinase Cdk6 by the tumour suppressor p16INK4a
    • Russo, A. A.; Tong, L.; Lee, J. O.; Jeffrey, P. D.; Pavletich, N. P. Structural basis for inhibition of the cyclin-dependent kinase Cdk6 by the tumour suppressor p16INK4a Nature 1998, 395, 237-243
    • (1998) Nature , vol.395 , pp. 237-243
    • Russo, A.A.1    Tong, L.2    Lee, J.O.3    Jeffrey, P.D.4    Pavletich, N.P.5
  • 43
    • 84859492310 scopus 로고    scopus 로고
    • Structure of an L27 domain heterotrimer from cell polarity complex Patj/Pals1/Mals2 reveals mutually independent L27 domain assembly mode
    • Zhang, J.; Yang, X.; Wang, Z.; Zhou, H.; Xie, X.; Shen, Y.; Long, J. Structure of an L27 domain heterotrimer from cell polarity complex Patj/Pals1/Mals2 reveals mutually independent L27 domain assembly mode J. Biol. Chem. 2012, 287, 11132-11140
    • (2012) J. Biol. Chem. , vol.287 , pp. 11132-11140
    • Zhang, J.1    Yang, X.2    Wang, Z.3    Zhou, H.4    Xie, X.5    Shen, Y.6    Long, J.7
  • 44
    • 33646116320 scopus 로고    scopus 로고
    • Solution structure of the RBCC/TRIM B-box1 domain of human MID1: B-box with a RING
    • Massiah, M. A.; Simmons, B. N.; Short, K. M.; Cox, T. C. Solution structure of the RBCC/TRIM B-box1 domain of human MID1: B-box with a RING J. Mol. Biol. 2006, 358, 532-545
    • (2006) J. Mol. Biol. , vol.358 , pp. 532-545
    • Massiah, M.A.1    Simmons, B.N.2    Short, K.M.3    Cox, T.C.4
  • 46
    • 84867257269 scopus 로고    scopus 로고
    • Lanthionine synthetase C-like protein 1 interacts with and inhibits cystathionine β-synthase: A target for neuronal antioxidant defense
    • Zhong, W.; Wang, Y.; Peng, L.; Ge, X.; Zhang, J.; Liu, S.; Zhang, X.; Xu, Z.; Chen, Z.; Luo, J. Lanthionine synthetase C-like protein 1 interacts with and inhibits cystathionine β-synthase: a target for neuronal antioxidant defense J. Biol. Chem. 2012, 287, 34189-34201
    • (2012) J. Biol. Chem. , vol.287 , pp. 34189-34201
    • Zhong, W.1    Wang, Y.2    Peng, L.3    Ge, X.4    Zhang, J.5    Liu, S.6    Zhang, X.7    Xu, Z.8    Chen, Z.9    Luo, J.10
  • 49
    • 80455125845 scopus 로고    scopus 로고
    • Structural chemistry of human SET domain protein methyltransferases
    • Schapira, M. Structural chemistry of human SET domain protein methyltransferases Curr. Chem. Genomics 2011, 5, 85-94
    • (2011) Curr. Chem. Genomics , vol.5 , pp. 85-94
    • Schapira, M.1
  • 50
    • 0026639625 scopus 로고
    • Protein interaction cloning in yeast: Identification of mammalian proteins that react with the leucine zipper of Jun
    • Chevray, P. M.; Nathans, D. Protein interaction cloning in yeast: identification of mammalian proteins that react with the leucine zipper of Jun Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 5789-5793
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 5789-5793
    • Chevray, P.M.1    Nathans, D.2
  • 51
    • 0025675856 scopus 로고
    • High efficiency transformation of Escherichia coli with plasmids
    • Inoue, H.; Nojima, H.; Okayama, H. High efficiency transformation of Escherichia coli with plasmids Gene 1990, 96, 23-28
    • (1990) Gene , vol.96 , pp. 23-28
    • Inoue, H.1    Nojima, H.2    Okayama, H.3
  • 52
    • 0017085802 scopus 로고
    • A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome
    • Clarke, L.; Carbon, J. A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome Cell 1976, 9, 91-99
    • (1976) Cell , vol.9 , pp. 91-99
    • Clarke, L.1    Carbon, J.2
  • 53
    • 0024799254 scopus 로고
    • High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier
    • Schiestl, R. H.; Gietz, R. D. High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier Curr. Genet. 1989, 16, 339-346
    • (1989) Curr. Genet. , vol.16 , pp. 339-346
    • Schiestl, R.H.1    Gietz, R.D.2
  • 54
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B.; Hillier, L.; Wendl, M. C.; Green, P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment Genome Res. 1998, 8, 175-185
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 56
    • 0032519307 scopus 로고    scopus 로고
    • Automating the identification of DNA variations using quality-based fluorescence re-sequencing: Analysis of the human mitochondrial genome
    • Rieder, M. J.; Taylor, S. L.; Tobe, V. O.; Nickerson, D. A. Automating the identification of DNA variations using quality-based fluorescence re-sequencing: analysis of the human mitochondrial genome Nucleic Acids Res. 1998, 26, 967-973
    • (1998) Nucleic Acids Res. , vol.26 , pp. 967-973
    • Rieder, M.J.1    Taylor, S.L.2    Tobe, V.O.3    Nickerson, D.A.4
  • 59
    • 84862221167 scopus 로고    scopus 로고
    • SMART 7: Recent updates to the protein domain annotation resource
    • Letunic, I.; Doerks, T.; Bork, P. SMART 7: recent updates to the protein domain annotation resource Nucleic Acids Res. 2012, 40, D302-305
    • (2012) Nucleic Acids Res. , vol.40 , pp. 302-305
    • Letunic, I.1    Doerks, T.2    Bork, P.3


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