-
1
-
-
32944464648
-
Pathogen recognition and innate immunity
-
Akira S, Uematsu S, Takeuchi O (2006) Pathogen recognition and innate immunity. Cell 124: 783-801.
-
(2006)
Cell
, vol.124
, pp. 783-801
-
-
Akira, S.1
Uematsu, S.2
Takeuchi, O.3
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
51849103168
-
The microbial and danger signals that activate Nod-like receptors
-
Benko S, Philpott DJ, Girardin SE (2008) The microbial and danger signals that activate Nod-like receptors. Cytokine 43: 368-373.
-
(2008)
Cytokine
, vol.43
, pp. 368-373
-
-
Benko, S.1
Philpott, D.J.2
Girardin, S.E.3
-
4
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The protein data bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
5
-
-
0037221395
-
Crohn's disease-associated NOD2 variants share a signaling defect in response to lipopolysaccharide and peptidoglycan
-
Bonen DK, Ogura Y, Nicolae DL, Inohara N, Saab L, Tanabe T, Chen FF, Foster SJ, Duerr RH, Brant SR, Cho JH, Nuñez G (2003) Crohn's disease-associated NOD2 variants share a signaling defect in response to lipopolysaccharide and peptidoglycan. Gastroenterology 124: 140-146.
-
(2003)
Gastroenterology
, vol.124
, pp. 140-146
-
-
Bonen, D.K.1
Ogura, Y.2
Nicolae, D.L.3
Inohara, N.4
Saab, L.5
Tanabe, T.6
Chen, F.F.7
Foster, S.J.8
Duerr, R.H.9
Brant, S.R.10
Cho, J.H.11
Nuñez, G.12
-
6
-
-
23144444979
-
Protein structure prediction servers at University College London
-
Bryson K, McGuffin LJ, Marsden RL, Ward JJ, Sodhi JS, Jones DT (2005) Protein structure prediction servers at University College London. Nucleic Acids Res W 33: 36-38.
-
(2005)
Nucleic Acids Res W
, vol.33
, pp. 36-38
-
-
Bryson, K.1
McGuffin, L.J.2
Marsden, R.L.3
Ward, J.J.4
Sodhi, J.S.5
Jones, D.T.6
-
7
-
-
2542466966
-
Innate immune recognition of microbes through Nod1 and Nod2: implications for disease
-
Carneiro LA, Travassos LH, Philpott DJ (2004) Innate immune recognition of microbes through Nod1 and Nod2: implications for disease. Microbes Infect 6: 609-616.
-
(2004)
Microbes Infect
, vol.6
, pp. 609-616
-
-
Carneiro, L.A.1
Travassos, L.H.2
Philpott, D.J.3
-
8
-
-
0041827164
-
Nods, Nalps and Naip: intracellular regulators of bacterial-induced inflammation
-
Chamaillard M, Girardin SE, Viala J, Philpott DJ (2003) Nods, Nalps and Naip: intracellular regulators of bacterial-induced inflammation. Cell Microbiol 5: 581-592.
-
(2003)
Cell Microbiol
, vol.5
, pp. 581-592
-
-
Chamaillard, M.1
Girardin, S.E.2
Viala, J.3
Philpott, D.J.4
-
9
-
-
78650689216
-
Cloning of two rainbow trout nucleotide-binding oligomerization domain containing 2 (NOD2) splice variants and functional characterization of the NOD2 effector domains
-
Chang M, Wang T, Nie P, Zou J, Secombes CJ (2011) Cloning of two rainbow trout nucleotide-binding oligomerization domain containing 2 (NOD2) splice variants and functional characterization of the NOD2 effector domains. Fish Shellfish Immunol 30: 118-127.
-
(2011)
Fish Shellfish Immunol
, vol.30
, pp. 118-127
-
-
Chang, M.1
Wang, T.2
Nie, P.3
Zou, J.4
Secombes, C.J.5
-
10
-
-
66149086936
-
NOD-like receptors: role in innate immunity and inflammatory disease
-
Chen G, Shaw MH, Kim YG, Nuñez G (2009) NOD-like receptors: role in innate immunity and inflammatory disease. Annu Rev Pathol 4: 365-398.
-
(2009)
Annu Rev Pathol
, vol.4
, pp. 365-398
-
-
Chen, G.1
Shaw, M.H.2
Kim, Y.G.3
Nuñez, G.4
-
11
-
-
74549178560
-
MolProbity: all-atom structure validation for macromolecular crystallography
-
Chen VB, Arendall WB 3rd, Headd JJ, Keedy DA, Immormino RM, Kapral GJ, Murray LW, Richardson JS, Richardson DC (2010a) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Cryst D 66: 12-21.
-
(2010)
Acta Cryst D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall 3rd, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
12
-
-
73049088885
-
Molecular characterization and expression analysis of nuclear oligomerization domain proteins NOD1 and NOD2 in grass carp Ctenopharyngodon idella
-
Chen WQ, Xu QQ, Chang MX, Nie P, Peng KM (2010b) Molecular characterization and expression analysis of nuclear oligomerization domain proteins NOD1 and NOD2 in grass carp Ctenopharyngodon idella. Fish Shellfish Immunol 28: 18-29.
-
(2010)
Fish Shellfish Immunol
, vol.28
, pp. 18-29
-
-
Chen, W.Q.1
Xu, Q.Q.2
Chang, M.X.3
Nie, P.4
Peng, K.M.5
-
13
-
-
77349115701
-
Molecular characterization and expression analysis of the IFN-gamma related gene (IFN-gamma rel) in grass carp Ctenopharyngodon idella
-
Chen WQ, Xu QQ, Chang MX, Zou J, Secombes CJ, Peng KM, Nie P (2010c) Molecular characterization and expression analysis of the IFN-gamma related gene (IFN-gamma rel) in grass carp Ctenopharyngodon idella. Vet Immunol Immunopathol 134: 199-207.
-
(2010)
Vet Immunol Immunopathol
, vol.134
, pp. 199-207
-
-
Chen, W.Q.1
Xu, Q.Q.2
Chang, M.X.3
Zou, J.4
Secombes, C.J.5
Peng, K.M.6
Nie, P.7
-
14
-
-
0027180507
-
Verification of protein structures: patterns of nonbonded atomic interactions
-
Colovos C, Yeates TO (1993) Verification of protein structures: patterns of nonbonded atomic interactions. Protein Sci 2: 1511-1519.
-
(1993)
Protein Sci
, vol.2
, pp. 1511-1519
-
-
Colovos, C.1
Yeates, T.O.2
-
15
-
-
0642373240
-
A study of quality measures for protein threading models
-
Cristobal S, Zemla A, Fischer D, Rychlewski L, Elofsson A (2001) A study of quality measures for protein threading models. BMC Bioinform 2: 5.
-
(2001)
BMC Bioinform
, vol.2
, pp. 5
-
-
Cristobal, S.1
Zemla, A.2
Fischer, D.3
Rychlewski, L.4
Elofsson, A.5
-
16
-
-
34547592557
-
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
-
Davis IW, Leaver-Fay A, Chen VB et al (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res W 35: 375-383.
-
(2007)
Nucleic Acids Res W
, vol.35
, pp. 375-383
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
-
17
-
-
0030767485
-
VERIFY3D: assessment of protein models with three-dimensional profiles
-
Eisenberg D, Lüthy R, Bowie JU (1997) VERIFY3D: assessment of protein models with three-dimensional profiles. Methods Enzymol 277: 396-404.
-
(1997)
Methods Enzymol
, vol.277
, pp. 396-404
-
-
Eisenberg, D.1
Lüthy, R.2
Bowie, J.U.3
-
18
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A (2010) The Pfam protein families database. Nucleic Acids Res D 38: 211-222.
-
(2010)
Nucleic Acids Res D
, vol.38
, pp. 211-222
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.12
Eddy, S.R.13
Bateman, A.14
-
19
-
-
0043122944
-
ExPASy: the proteomics server for in-depth protein knowledge and analysis
-
Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A (2003) ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 31: 3784-3788.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
20
-
-
0012722659
-
Nod2 is a general sensor of peptidoglycan through muramyl dipeptide (MDP) detection
-
Girardin SE, Boneca IG, Viala J, Chamaillard M, Labigne A, Thomas G, Philpott DJ, Sansonetti PJ (2003) Nod2 is a general sensor of peptidoglycan through muramyl dipeptide (MDP) detection. J Biol Chem 278: 8869-8872.
-
(2003)
J Biol Chem
, vol.278
, pp. 8869-8872
-
-
Girardin, S.E.1
Boneca, I.G.2
Viala, J.3
Chamaillard, M.4
Labigne, A.5
Thomas, G.6
Philpott, D.J.7
Sansonetti, P.J.8
-
21
-
-
77956906678
-
Synthesis of biologically active biotinylated muramyl dipeptides
-
Grimes CL, Podolsky DK, O'Shea EK (2010) Synthesis of biologically active biotinylated muramyl dipeptides. Bioorg Med Chem Lett 20: 6061-6063.
-
(2010)
Bioorg Med Chem Lett
, vol.20
, pp. 6061-6063
-
-
Grimes, C.L.1
Podolsky, D.K.2
O'Shea, E.K.3
-
22
-
-
38549084725
-
A critical role of RICK/RIP2 polyubiquitination in Nod-induced NF-κB activation
-
Hasegawa M, Fujimoto Y, Lucas PC, Nakano H, Fukase K, Núñez G, Inohara N (2008) A critical role of RICK/RIP2 polyubiquitination in Nod-induced NF-κB activation. EMBO J 27: 373-383.
-
(2008)
EMBO J
, vol.27
, pp. 373-383
-
-
Hasegawa, M.1
Fujimoto, Y.2
Lucas, P.C.3
Nakano, H.4
Fukase, K.5
Núñez, G.6
Inohara, N.7
-
23
-
-
0000388705
-
LINCS: a linear constraint solver for molecular simulations
-
Hess B, Bekker H, Berendsen H, Fraaije J (1997) LINCS: a linear constraint solver for molecular simulations. J Comput Chem 18: 1463-1472.
-
(1997)
J Comput Chem
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.3
Fraaije, J.4
-
24
-
-
33745636333
-
Detecting and overcoming hemihedral twinning during the MIR structure determination of Rna1p
-
Hillig RC, Renault L (2006) Detecting and overcoming hemihedral twinning during the MIR structure determination of Rna1p. Acta Cryst D 62: 750.
-
(2006)
Acta Cryst D
, vol.62
, pp. 750
-
-
Hillig, R.C.1
Renault, L.2
-
25
-
-
0033152163
-
The crystal structure of rna1p: a new fold for a GTPase-activating protein
-
Hillig RC, Renault L, Vetter IR, Drell T 4th, Wittinghofer A, Becker J (1999) The crystal structure of rna1p: a new fold for a GTPase-activating protein. Mol Cell 3: 781-791.
-
(1999)
Mol Cell
, vol.3
, pp. 781-791
-
-
Hillig, R.C.1
Renault, L.2
Vetter, I.R.3
Drell 4th, T.4
Wittinghofer, A.5
Becker, J.6
-
26
-
-
0037380969
-
CARD15/NOD2 functions as an antibacterial factor in human intestinal epithelial cells
-
Hisamatsu T, Suzuki M, Reinecker HC, Nadeau WJ, McCormick BA, Podolsky DK (2003) CARD15/NOD2 functions as an antibacterial factor in human intestinal epithelial cells. Gastroenterology 124: 993-1000.
-
(2003)
Gastroenterology
, vol.124
, pp. 993-1000
-
-
Hisamatsu, T.1
Suzuki, M.2
Reinecker, H.C.3
Nadeau, W.J.4
McCormick, B.A.5
Podolsky, D.K.6
-
28
-
-
0038624558
-
NODs: intracellular proteins involved in inflammation and apoptosis
-
Inohara N, Nuñez G (2003) NODs: intracellular proteins involved in inflammation and apoptosis. Nat Rev Immunol 3: 371-382.
-
(2003)
Nat Rev Immunol
, vol.3
, pp. 371-382
-
-
Inohara, N.1
Nuñez, G.2
-
29
-
-
0034623225
-
An induced proximity model for NF-κB activation in the Nod1/RICK and RIP signaling pathways
-
Inohara N, Koseki T, Lin J, del Peso L, Lucas PC, Chen FF, Ogura Y, Núñez G (2000) An induced proximity model for NF-κB activation in the Nod1/RICK and RIP signaling pathways. J Biol Chem 275: 27823-27831.
-
(2000)
J Biol Chem
, vol.275
, pp. 27823-27831
-
-
Inohara, N.1
Koseki, T.2
Lin, J.3
del Peso, L.4
Lucas, P.C.5
Chen, F.F.6
Ogura, Y.7
Núñez, G.8
-
30
-
-
0037458665
-
Host recognition of bacterial muramyl dipeptide mediated through NOD2
-
Inohara N, Ogura Y, Fontalba A, Gutierrez O, Pons F, Crespo J, Fukase K, Inamura S, Kusumoto S, Hashimoto M, Foster SJ, Moran AP, Fernandez-Luna JL, Nuñez G (2003) Host recognition of bacterial muramyl dipeptide mediated through NOD2. J Biol Chem 278: 5509-5512.
-
(2003)
J Biol Chem
, vol.278
, pp. 5509-5512
-
-
Inohara, N.1
Ogura, Y.2
Fontalba, A.3
Gutierrez, O.4
Pons, F.5
Crespo, J.6
Fukase, K.7
Inamura, S.8
Kusumoto, S.9
Hashimoto, M.10
Foster, S.J.11
Moran, A.P.12
Fernandez-Luna, J.L.13
Nuñez, G.14
-
31
-
-
17644366913
-
NOD-LRR proteins: role in host-microbial interactions and inflammatory disease
-
Inohara C, McDonald C, Nuñez G (2005) NOD-LRR proteins: role in host-microbial interactions and inflammatory disease. Annu Rev Biochem 74: 355-383.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 355-383
-
-
Inohara, C.1
McDonald, C.2
Nuñez, G.3
-
32
-
-
0037709366
-
Cloning, sequencing and expression analysis of the mouse NOD2/CARD15 gene
-
Iwanaga Y, Davey MP, Martin TM, Planck SR, DePriest ML, Baugh MM, Suing CM, Rosenbaum JT (2003) Cloning, sequencing and expression analysis of the mouse NOD2/CARD15 gene. Inflamm Res 52: 272-276.
-
(2003)
Inflamm Res
, vol.52
, pp. 272-276
-
-
Iwanaga, Y.1
Davey, M.P.2
Martin, T.M.3
Planck, S.R.4
DePriest, M.L.5
Baugh, M.M.6
Suing, C.M.7
Rosenbaum, J.T.8
-
33
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
Jones G, Willett P, Glen RC, Leach AR, Taylor R (1997) Development and validation of a genetic algorithm for flexible docking. J Mol Biol 267: 727-748.
-
(1997)
J Mol Biol
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
34
-
-
0028911034
-
A structural basis of the interactions between leucine-rich repeats and protein ligands
-
Kobe B, Deisenhofer J (1995) A structural basis of the interactions between leucine-rich repeats and protein ligands. Nature 374: 183-186.
-
(1995)
Nature
, vol.374
, pp. 183-186
-
-
Kobe, B.1
Deisenhofer, J.2
-
35
-
-
0030596012
-
Mechanism of ribonuclease inhibition by ribonuclease inhibitor protein based on the crystal structure of its complex with ribonuclease A
-
Kobe B, Deisenhofer J (1996) Mechanism of ribonuclease inhibition by ribonuclease inhibitor protein based on the crystal structure of its complex with ribonuclease A. J Mol Biol 264: 1028-1043.
-
(1996)
J Mol Biol
, vol.264
, pp. 1028-1043
-
-
Kobe, B.1
Deisenhofer, J.2
-
36
-
-
0035692811
-
The leucine-rich repeat as a protein recognition motif
-
Kobe B, Kajava AV (2001) The leucine-rich repeat as a protein recognition motif. Curr Opin Struct Biol 11: 725-732.
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 725-732
-
-
Kobe, B.1
Kajava, A.V.2
-
37
-
-
77951877953
-
Identification and functions of pattern-recognition receptors
-
Kumagai Y, Akira S (2010) Identification and functions of pattern-recognition receptors. J Allergy Clin Immunol 125: 985-992.
-
(2010)
J Allergy Clin Immunol
, vol.125
, pp. 985-992
-
-
Kumagai, Y.1
Akira, S.2
-
38
-
-
40949159815
-
A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish
-
Laing KJ, Purcell MK, Winton JR, Hansen JD (2008) A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish. BMC Evol Biol 8: 42.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 42
-
-
Laing, K.J.1
Purcell, M.K.2
Winton, J.R.3
Hansen, J.D.4
-
39
-
-
0000243829
-
PROCHECK: a program to check the stereochemical quality of protein structures
-
Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Cryst 26: 283-291.
-
(1993)
J Appl Cryst
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
40
-
-
37749012084
-
Nod1 and Nod2 in innate immunity and human inflammatory disorders
-
Le Bourhis L, Benko S, Girardin SE (2007) Nod1 and Nod2 in innate immunity and human inflammatory disorders. Biochem Soc Trans 35: 1479-1484.
-
(2007)
Biochem Soc Trans
, vol.35
, pp. 1479-1484
-
-
Le Bourhis, L.1
Benko, S.2
Girardin, S.E.3
-
41
-
-
84862221167
-
SMART 7: recent updates to the protein domain annotation resource
-
Letunic I, Doerks T, Bork P (2012) SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res D 40: 302-305.
-
(2012)
Nucleic Acids Res D
, vol.40
, pp. 302-305
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
43
-
-
22844435410
-
Innate immunity of fish (overview)
-
Magnadóttir B (2006) Innate immunity of fish (overview). Fish Shellfish Immunol 20: 137-151.
-
(2006)
Fish Shellfish Immunol
, vol.20
, pp. 137-151
-
-
Magnadóttir, B.1
-
44
-
-
78651285748
-
CDD: a conserved domain database for the functional annotation of proteins
-
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH (2011) CDD: a conserved domain database for the functional annotation of proteins. Nucleic Acids Res D 39: 225-229.
-
(2011)
Nucleic Acids Res D
, vol.39
, pp. 225-229
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
DeWeese-Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Lu, F.16
Marchler, G.H.17
Mullokandov, M.18
Omelchenko, M.V.19
Robertson, C.L.20
Song, J.S.21
Thanki, N.22
Yamashita, R.A.23
Zhang, D.24
Zhang, N.25
Zheng, C.26
Bryant, S.H.27
more..
-
45
-
-
34347209992
-
Comparative sequence analysis of leucine-rich repeats (LRRs) within vertebrate toll-like receptors
-
Matsushima N, Tanaka T, Enkhbayar P, Mikami T, Taga M, Yamada K, Kuroki Y (2007) Comparative sequence analysis of leucine-rich repeats (LRRs) within vertebrate toll-like receptors. BMC Genomics 8: 124.
-
(2007)
BMC Genomics
, vol.8
, pp. 124
-
-
Matsushima, N.1
Tanaka, T.2
Enkhbayar, P.3
Mikami, T.4
Taga, M.5
Yamada, K.6
Kuroki, Y.7
-
46
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin LJ, Bryson K, Jones DT (2000) The PSIPRED protein structure prediction server. Bioinformatics 16: 404-405.
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
47
-
-
84986440341
-
Settle: an analytical version of the SHAKE and RATTLE algorithm for rigid water models
-
Miyamoto S, Kollman PA (1992) Settle: an analytical version of the SHAKE and RATTLE algorithm for rigid water models. J Comp Chem 13: 952-962.
-
(1992)
J Comp Chem
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
48
-
-
70350356853
-
Activating immunity: lessons from the TLRs and NLRs
-
Monie TP, Bryant CE, Gay NJ (2009) Activating immunity: lessons from the TLRs and NLRs. Trends Biochem Sci 34: 553-561.
-
(2009)
Trends Biochem Sci
, vol.34
, pp. 553-561
-
-
Monie, T.P.1
Bryant, C.E.2
Gay, N.J.3
-
49
-
-
0030864496
-
Molecular recognition of human angiogenin by placental ribonuclease inhibitor-an X-ray crystallographic study at 2.0 A resolution
-
Papageorgiou AC, Shapiro R, Acharya KR (1997) Molecular recognition of human angiogenin by placental ribonuclease inhibitor-an X-ray crystallographic study at 2. 0 A resolution. EMBO J 16: 5162-5177.
-
(1997)
EMBO J
, vol.16
, pp. 5162-5177
-
-
Papageorgiou, A.C.1
Shapiro, R.2
Acharya, K.R.3
-
50
-
-
0019707626
-
Polymorphic transitions in single crystals: a new molecular dynamics method
-
Parrinello M, Rahman A (1981) Polymorphic transitions in single crystals: a new molecular dynamics method. J Appl Phys 52: 7182-7190.
-
(1981)
J Appl Phys
, vol.52
, pp. 7182-7190
-
-
Parrinello, M.1
Rahman, A.2
-
51
-
-
0030598343
-
Deviations from standard atomic volumes as a quality measure for protein crystal structures
-
Pontius J, Richelle J, Wodak SJ (1996) Deviations from standard atomic volumes as a quality measure for protein crystal structures. J Mol Biol 264: 121-136.
-
(1996)
J Mol Biol
, vol.264
, pp. 121-136
-
-
Pontius, J.1
Richelle, J.2
Wodak, S.J.3
-
52
-
-
64049102506
-
Nucleotide oligomerization domain-2 (NOD2)-induced uveitis: dependence on IFN-gamma
-
Rosenzweig HL, Kawaguchi T, Martin TM, Planck SR, Davey MP, Rosenbaum JT (2009) Nucleotide oligomerization domain-2 (NOD2)-induced uveitis: dependence on IFN-gamma. Invest Ophthalmol Vis Sci 50: 1739-1745.
-
(2009)
Invest Ophthalmol Vis Sci
, vol.50
, pp. 1739-1745
-
-
Rosenzweig, H.L.1
Kawaguchi, T.2
Martin, T.M.3
Planck, S.R.4
Davey, M.P.5
Rosenbaum, J.T.6
-
53
-
-
77954065271
-
I-TASSER: a unified platform for automated protein structure and function prediction
-
Roy A, Kucukural A, Zhang Y (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5: 725-738.
-
(2010)
Nat Protoc
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
54
-
-
43149094164
-
Pfam 10 years on: 10,000 families and still growing
-
Sammut SJ, Finn RD, Bateman A (2008) Pfam 10 years on: 10, 000 families and still growing. Brief Bioinform 9: 210-219.
-
(2008)
Brief Bioinform
, vol.9
, pp. 210-219
-
-
Sammut, S.J.1
Finn, R.D.2
Bateman, A.3
-
55
-
-
7544226311
-
PRODRG: a tool for high-throughput crystallography of protein-ligand complexes
-
SchuÈttelkopf AW, van Aalten DMF (2004) PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. Acta Cryst D 60: 1355-1363.
-
(2004)
Acta Cryst D
, vol.60
, pp. 1355-1363
-
-
SchuÈttelkopf, A.W.1
van Aalten, D.M.F.2
-
56
-
-
0032568655
-
SMART, a simple modular architecture research tool: identification of signaling domains
-
Schultz J, Milpetz F, Bork P, Ponting CP (1998) SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci 95: 5857-5864.
-
(1998)
Proc Natl Acad Sci
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
58
-
-
67349242443
-
NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish
-
Sha Z, Abernathy JW, Wang S, Li P, Kucuktas H, Liu H, Peatman E, Liu Z (2009) NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish. Dev Comp Immunol 33: 991-999.
-
(2009)
Dev Comp Immunol
, vol.33
, pp. 991-999
-
-
Sha, Z.1
Abernathy, J.W.2
Wang, S.3
Li, P.4
Kucuktas, H.5
Liu, H.6
Peatman, E.7
Liu, Z.8
-
59
-
-
84858342796
-
Molecular cloning and characterization of nucleotide binding and oligomerization domain-1 (NOD1) receptor in the Indian Major Carp, rohu (Labeo rohita), and analysis of its inductive expression and down-stream signalling molecules following ligands exposure and Gram-negative bacterial infections
-
Swain B, Basu M, Samanta M (2012a) Molecular cloning and characterization of nucleotide binding and oligomerization domain-1 (NOD1) receptor in the Indian Major Carp, rohu (Labeo rohita), and analysis of its inductive expression and down-stream signalling molecules following ligands exposure and Gram-negative bacterial infections. Fish Shellfish Immunol 32: 899-908.
-
(2012)
Fish Shellfish Immunol
, vol.32
, pp. 899-908
-
-
Swain, B.1
Basu, M.2
Samanta, M.3
-
60
-
-
80054963115
-
Molecular characterization of nucleotide binding and oligomerization domain (NOD)-2, analysis of its inductive expression and down-stream signaling following ligands exposure and bacterial infection in rohu (Labeo rohita)
-
Swain B, Basu M, Sahoo BR, Maiti NK, Routray P, Eknath AE, Samanta M (2012b) Molecular characterization of nucleotide binding and oligomerization domain (NOD)-2, analysis of its inductive expression and down-stream signaling following ligands exposure and bacterial infection in rohu (Labeo rohita). Dev Comp Immunol 36: 93-103.
-
(2012)
Dev Comp Immunol
, vol.36
, pp. 93-103
-
-
Swain, B.1
Basu, M.2
Sahoo, B.R.3
Maiti, N.K.4
Routray, P.5
Eknath, A.E.6
Samanta, M.7
-
61
-
-
77950343791
-
Patten recognition receptor and inflammation
-
Takeuchi O, Akira S (2010) Patten recognition receptor and inflammation. Cell 140: 805-820.
-
(2010)
Cell
, vol.140
, pp. 805-820
-
-
Takeuchi, O.1
Akira, S.2
-
62
-
-
2342583513
-
Regulatory regions and critical residues of NOD2 involved in muramyl dipeptide recognition
-
Tanabe T, Chamaillard M, Ogura Y, Zhu L, Qiu S, Masumoto J, Ghosh P, Moran A, Predergast MM, Tromp G, Williams CJ, Inohara N, Núñez G (2004) Regulatory regions and critical residues of NOD2 involved in muramyl dipeptide recognition. EMBO J 23: 1587-1597.
-
(2004)
EMBO J
, vol.23
, pp. 1587-1597
-
-
Tanabe, T.1
Chamaillard, M.2
Ogura, Y.3
Zhu, L.4
Qiu, S.5
Masumoto, J.6
Ghosh, P.7
Moran, A.8
Predergast, M.M.9
Tromp, G.10
Williams, C.J.11
Inohara, N.12
Núñez, G.13
-
63
-
-
0027968068
-
ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
64
-
-
40449140937
-
The NLR gene family: a standard nomenclature
-
Ting JP, Lovering RC, Alnemri ES, Bertin J, Boss JM, Davis BK, Flavell RA, Girardin SE, Godzik A, Harton JA, Hoffman HM, Hugot JP, Inohara N, Mackenzie A, Maltais LJ, Nunez G, Ogura Y, Otten LA, Philpott D, Reed JC, Reith W, Schreiber S, Steimle V, Ward PA (2008) The NLR gene family: a standard nomenclature. Immunity 28: 285-287.
-
(2008)
Immunity
, vol.28
, pp. 285-287
-
-
Ting, J.P.1
Lovering, R.C.2
Alnemri, E.S.3
Bertin, J.4
Boss, J.M.5
Davis, B.K.6
Flavell, R.A.7
Girardin, S.E.8
Godzik, A.9
Harton, J.A.10
Hoffman, H.M.11
Hugot, J.P.12
Inohara, N.13
Mackenzie, A.14
Maltais, L.J.15
Nunez, G.16
Ogura, Y.17
Otten, L.A.18
Philpott, D.19
Reed, J.C.20
Reith, W.21
Schreiber, S.22
Steimle, V.23
Ward, P.A.24
more..
-
65
-
-
34548213705
-
Molecular cloning and functional characterization of porcine nucleotide-binding oligomerization domain-2 (NOD2)
-
Tohno M, Ueda W, Azuma Y, Shimazu T, Katoh S, Wang JM, Aso H, Takada H, Kawai Y, Saito T, Kitazawa H (2008) Molecular cloning and functional characterization of porcine nucleotide-binding oligomerization domain-2 (NOD2). Mol Immunol 45: 194-203.
-
(2008)
Mol Immunol
, vol.45
, pp. 194-203
-
-
Tohno, M.1
Ueda, W.2
Azuma, Y.3
Shimazu, T.4
Katoh, S.5
Wang, J.M.6
Aso, H.7
Takada, H.8
Kawai, Y.9
Saito, T.10
Kitazawa, H.11
-
66
-
-
27344454932
-
GROMACS: fast, flexible, and free
-
van Der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, Berendsen HJ (2005) GROMACS: fast, flexible, and free. J Comput Chem 26: 1701-1718.
-
(2005)
J Comput Chem
, vol.26
, pp. 1701-1718
-
-
van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.6
-
67
-
-
33644849605
-
NOD2/CARD15 mediates induction of the antimicrobial peptide human beta-defensin-2
-
Voss E, Wehkamp J, Wehkamp K, Stange EF, Schröder JM, Harder J (2006) NOD2/CARD15 mediates induction of the antimicrobial peptide human beta-defensin-2. J Biol Chem 281: 2005-2011.
-
(2006)
J Biol Chem
, vol.281
, pp. 2005-2011
-
-
Voss, E.1
Wehkamp, J.2
Wehkamp, K.3
Stange, E.F.4
Schröder, J.M.5
Harder, J.6
-
68
-
-
0025398721
-
WHAT IF: a molecular modeling and drug design program
-
Vriend G (1990) WHAT IF: a molecular modeling and drug design program. J Mol Graph 8: 52-56.
-
(1990)
J Mol Graph
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
69
-
-
34547566446
-
ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
-
Wiederstein M, Sippl MJ (2007) ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res W 35: 407-410.
-
(2007)
Nucleic Acids Res W
, vol.35
, pp. 407-410
-
-
Wiederstein, M.1
Sippl, M.J.2
-
70
-
-
34250851687
-
LOMETS: a local meta-threading-server for protein structure prediction
-
Wu S, Zhang Y (2007) LOMETS: a local meta-threading-server for protein structure prediction. Nucleic Acids Res 35: 3375-3382.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3375-3382
-
-
Wu, S.1
Zhang, Y.2
-
71
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang Y (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinform 9: 40.
-
(2008)
BMC Bioinform
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
72
-
-
79960395595
-
Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction
-
Zhang Z, Li Y, Lin B, Schroeder M, Huang B (2011) Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction. Bioinformatics 27: 2083-2088.
-
(2011)
Bioinformatics
, vol.27
, pp. 2083-2088
-
-
Zhang, Z.1
Li, Y.2
Lin, B.3
Schroeder, M.4
Huang, B.5
|