-
1
-
-
12344291073
-
Dark matter in the genome. Evidence of widespread transcription detected by microarray tiling experiments
-
Johnson, J.M., Edwards, S., Shoemaker, D. and Schadt, E.E. (2005) Dark matter in the genome. Evidence of widespread transcription detected by microarray tiling experiments. Trends Genet. 21, 93-102
-
(2005)
Trends Genet
, vol.21
, pp. 93-102
-
-
Johnson, J.M.1
Edwards, S.2
Shoemaker, D.3
Schadt, E.E.4
-
2
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
Bertone, P., Stolc, V., Royce, T.E., Rozowsky, J.S., Urban, A.E., Zhu, X., Rinn, J.L., Tongprasit, W., Samanta, M., Weissman, S. et al. (2004) Global identification of human transcribed sequences with genome tiling arrays. Science 306, 2242-2246
-
(2004)
Science
, vol.306
, pp. 2242-2246
-
-
Bertone, P.1
Stolc, V.2
Royce, T.E.3
Rozowsky, J.S.4
Urban, A.E.5
Zhu, X.6
Rinn, J.L.7
Tongprasit, W.8
Samanta, M.9
Weissman, S.10
-
3
-
-
7444233156
-
A gene expression map for the euchromatic genome of Drosophila melanogaster
-
Stolc, V., Gauhar, Z., Mason, C., Halasz, G., Van Batenburg, M.F., Rifkin, S.A., Hua, S., Herreman, T., Tongprasit, W., Barbano, P.E. et al. (2004) A gene expression map for the euchromatic genome of Drosophila melanogaster. Science 306, 655-660
-
(2004)
Science
, vol.306
, pp. 655-660
-
-
Stolc, V.1
Gauhar, Z.2
Mason, C.3
Halasz, G.4
Van Batenburg, M.F.5
Rifkin, S.A.6
Hua, S.7
Herreman, T.8
Tongprasit, W.9
Barbano, P.E.10
-
4
-
-
77952905505
-
Most "dark matter" transcripts are associated with known genes
-
van Bakel, H., Nislow, C., Blencowe, B.J. and Hughes, T.R. (2010) Most "dark matter" transcripts are associated with known genes. PLoS Biol. 8, e1000371
-
(2010)
PLoS Biol
, vol.8
-
-
Van Bakel, H.1
Nislow, C.2
Blencowe, B.J.3
Hughes, T.R.4
-
5
-
-
79960911703
-
The reality of pervasive transcription
-
Clark, M.B., Amaral, P.P., Schlesinger, F.J., Dinger, M.E., Taft, R.J., Rinn, J.L., Ponting, C.P., Stadler, P.F., Morris, K.V., Morillon, A. et al. (2011) The reality of pervasive transcription. PLoS Biol. 9, e1000625
-
(2011)
PLoS Biol
, vol.9
-
-
Clark, M.B.1
Amaral, P.P.2
Schlesinger, F.J.3
Dinger, M.E.4
Taft, R.J.5
Rinn, J.L.6
Ponting, C.P.7
Stadler, P.F.8
Morris, K.V.9
Morillon, A.10
-
6
-
-
84857074361
-
Molecular biology, RNA discrimination
-
Kowalczyk, M.S., Higgs, D.R. and Gingeras, T.R. (2012) Molecular biology, RNA discrimination. Nature 482, 310-311
-
(2012)
Nature
, vol.482
, pp. 310-311
-
-
Kowalczyk, M.S.1
Higgs, D.R.2
Gingeras, T.R.3
-
7
-
-
60149099385
-
Evolution and functions of long noncoding RNAs
-
Ponting, C.P., Oliver, P.L. and Reik, W. (2009) Evolution and functions of long noncoding RNAs. Cell 136, 629-641
-
(2009)
Cell
, vol.136
, pp. 629-641
-
-
Ponting, C.P.1
Oliver, P.L.2
Reik, W.3
-
8
-
-
33749153857
-
Biological function of unannotated transcription during the early development of Drosophila melanogaster
-
Manak, J.R., Dike, S., Sementchenko, V., Kapranov, P., Biemar, F., Long, J., Cheng, J., Bell, I., Ghosh, S., Piccolboni, A. and Gingeras, T.R. (2006) Biological function of unannotated transcription during the early development of Drosophila melanogaster. Nat. Genet. 38, 1151-1158
-
(2006)
Nat. Genet
, vol.38
, pp. 1151-1158
-
-
Manak, J.R.1
Dike, S.2
Sementchenko, V.3
Kapranov, P.4
Biemar, F.5
Long, J.6
Cheng, J.7
Bell, I.8
Ghosh, S.9
Piccolboni, A.10
Gingeras, T.R.11
-
9
-
-
84864098110
-
Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome
-
Young, R.S., Marques, A.C., Tibbit, C., Haerty, W., Bassett, A.R., Liu, J.L. and Ponting, C.P. (2012) Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome. Genome Biol. Evol. 4, 427-442
-
(2012)
Genome Biol. Evol
, vol.4
, pp. 427-442
-
-
Young, R.S.1
Marques, A.C.2
Tibbit, C.3
Haerty, W.4
Bassett, A.R.5
Liu, J.L.6
Ponting, C.P.7
-
10
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili, M.N., Trapnell, C., Goff, L., Koziol, M., Tazon-Vega, B., Regev, A. and Rinn, J.L. (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
11
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs. Analysis of their gene structure, evolution, and expression
-
Derrien, T., Johnson, R., Bussotti, G., Tanzer, A., Djebali, S., Tilgner, H., Guernec, G., Martin, D., Merkel, A., Knowles, D.G. et al. (2012) The GENCODE v7 catalog of human long noncoding RNAs. Analysis of their gene structure, evolution, and expression. Genome Res. 22, 1775-1789
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
-
12
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman, M., Amit, I., Garber, M., French, C., Lin, M.F., Feldser, D., Huarte, M., Zuk, O., Carey, B.W., Cassady, J.P. et al. (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458, 223-227
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
-
13
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil, A.M., Guttman, M., Huarte, M., Garber, M., Raj, A., Rivea Morales, D., Thomas, K., Presser, A., Bernstein, B.E., van Oudenaarden, A. et al. (2009) Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc. Natl. Acad. Sci. U.S.A. 106, 11667-11672
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
Van Oudenaarden, A.10
-
14
-
-
78650292831
-
The Majority of Total Nuclear-encoded Non-ribosomal RNA in A Human Cell Is 'dark matter' un-annotated RNA
-
Kapranov, P., St Laurent, G., Raz, T., Ozsolak, F., Reynolds, C.P., Sorensen, P.H., Reaman, G., Milos, P., Arceci, R.J., Thompson, J.F. and Triche TJ (2010) The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA. BMC Biol. 8, 149
-
(2010)
BMC Biol
, vol.8
, pp. 149
-
-
Kapranov, P.1
St Laurent, G.2
Raz, T.3
Ozsolak, F.4
Reynolds, C.P.5
Sorensen, P.H.6
Reaman, G.7
Milos, P.8
Arceci, R.J.9
Thompson, J.F.10
Triche, T.J.11
-
15
-
-
68449095847
-
Evolution, biogenesis and function of promoter-associated RNAs
-
Taft, R.J., Kaplan, C.D., Simons, C. and Mattick, J.S. (2009) Evolution, biogenesis and function of promoter-associated RNAs. Cell Cycle 8, 2332-2338
-
(2009)
Cell Cycle
, vol.8
, pp. 2332-2338
-
-
Taft, R.J.1
Kaplan, C.D.2
Simons, C.3
Mattick, J.S.4
-
16
-
-
34248162440
-
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
-
Ponjavic, J., Ponting, C.P. and Lunter, G. (2007) Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. Genome Res. 17, 556-565
-
(2007)
Genome Res
, vol.17
, pp. 556-565
-
-
Ponjavic, J.1
Ponting, C.P.2
Lunter, G.3
-
17
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
-
Okazaki, Y., Furuno, M., Kasukawa, T., Adachi, J., Bono, H., Kondo, S., Nikaido, I., Osato, N., Saito, R., Suzuki, H. et al. (2002) Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 420, 563-573
-
(2002)
Nature
, vol.420
, pp. 563-573
-
-
Okazaki, Y.1
Furuno, M.2
Kasukawa, T.3
Adachi, J.4
Bono, H.5
Kondo, S.6
Nikaido, I.7
Osato, N.8
Saito, R.9
Suzuki, H.10
-
18
-
-
34547582418
-
CPC, assess the protein-coding potential of transcripts using sequence features and support vector machine
-
Kong, L., Zhang, Y., Ye, Z.Q., Liu, X.Q., Zhao, S.Q., Wei, L. and Gao, G. (2007) CPC, assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res. 35, W345-W349
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kong, L.1
Zhang, Y.2
Ye, Z.Q.3
Liu, X.Q.4
Zhao, S.Q.5
Wei, L.6
Gao, G.7
-
19
-
-
79959446962
-
PhyloCSF, a comparative genomics method to distinguish protein coding and non-coding regions
-
Lin, M.F., Jungreis, I. and Kellis, M. (2011) PhyloCSF, a comparative genomics method to distinguish protein coding and non-coding regions. Bioinformatics 27, i275-i282
-
(2011)
Bioinformatics
, vol.27
-
-
Lin, M.F.1
Jungreis, I.2
Kellis, M.3
-
20
-
-
84857384562
-
Putatively noncoding transcripts show extensive association with ribosomes
-
Wilson, B.A. and Masel, J. (2011) Putatively noncoding transcripts show extensive association with ribosomes. Genome Biol. Evol. 3, 1245-1252
-
(2011)
Genome Biol. Evol
, vol.3
, pp. 1245-1252
-
-
Wilson, B.A.1
Masel, J.2
-
21
-
-
57149107578
-
Differentiating protein-coding and noncoding RNA. Challenges and ambiguities
-
Dinger, M.E., Pang, K.C., Mercer, T.R. and Mattick, J.S. (2008) Differentiating protein-coding and noncoding RNA. Challenges and ambiguities. PLoS Comput. Biol. 4, e1000176
-
(2008)
PLoS Comput. Biol
, vol.4
-
-
Dinger, M.E.1
Pang, K.C.2
Mercer, T.R.3
Mattick, J.S.4
-
22
-
-
34250331200
-
Structured RNAs in the ENCODE selected regions of the human genome
-
Washietl, S., Pedersen, J.S., Korbel, J.O., Stocsits, C., Gruber, A.R., Hackermüller, J., Hertel, J., Lindemeyer, M., Reiche, K., Tanzer, A. et al. (2007) Structured RNAs in the ENCODE selected regions of the human genome. Genome Res. 17, 852-864
-
(2007)
Genome Res
, vol.17
, pp. 852-864
-
-
Washietl, S.1
Pedersen, J.S.2
Korbel, J.O.3
Stocsits, C.4
Gruber, A.R.5
Hackermüller, J.6
Hertel, J.7
Lindemeyer, M.8
Reiche, K.9
Tanzer, A.10
-
23
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M.C., Maeda, N., Oyama, R., Ravasi, T., Lenhard, B., Wells, C. et al. (2005) The transcriptional landscape of the mammalian genome. Science 309, 1559-1563
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.C.5
Maeda, N.6
Oyama, R.7
Ravasi, T.8
Lenhard, B.9
Wells, C.10
-
24
-
-
77954399763
-
Long noncoding RNA genes, conservation of sequence and brain expression among diverse amniotes
-
Chodroff, R.A., Goodstadt, L., Sirey, T.M., Oliver, P.L., Davies, K.E., Green, E.D., Molnár, Z. and Ponting, C.P. (2010) Long noncoding RNA genes, conservation of sequence and brain expression among diverse amniotes. Genome Biol. 11, R72
-
(2010)
Genome Biol
, vol.11
-
-
Chodroff, R.A.1
Goodstadt, L.2
Sirey, T.M.3
Oliver, P.L.4
Davies, K.E.5
Green, E.D.6
Molnár, Z.7
Ponting, C.P.8
-
25
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
Ulitsky, I., Shkumatava, A., Jan, C.H., Sive, H. and Bartel, D.P. (2011) Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 147, 1537-1550
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Sive, H.4
Bartel, D.P.5
-
26
-
-
25444452651
-
A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription
-
Babak, T., Blencowe, B.J. and Hughes, T.R. (2005) A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription. BMC Genomics 6, 104
-
(2005)
BMC Genomics
, vol.6
, pp. 104
-
-
Babak, T.1
Blencowe, B.J.2
Hughes, T.R.3
-
27
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
Mercer, T.R., Dinger, M.E., Sunkin, S.M., Mehler, M.F. and Mattick, J.S. (2008) Specific expression of long noncoding RNAs in the mouse brain. Proc. Natl. Acad. Sci. U.S.A. 105, 716-721
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
Mehler, M.F.4
Mattick, J.S.5
-
28
-
-
0030975363
-
Genes expressed in neurons of adult male Drosophila
-
Amrein, H. and Axel, R. (1997) Genes expressed in neurons of adult male Drosophila. Cell 88, 459-469
-
(1997)
Cell
, vol.88
, pp. 459-469
-
-
Amrein, H.1
Axel, R.2
-
29
-
-
0033588309
-
Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin
-
Kelley, R.L., Meller, V.H., Gordadze, P.R., Roman, G., Davis, R.L. and Kuroda, M.I. (1999) Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin. Cell 98, 513-522
-
(1999)
Cell
, vol.98
, pp. 513-522
-
-
Kelley, R.L.1
Meller, V.H.2
Gordadze, P.R.3
Roman, G.4
Davis, R.L.5
Kuroda, M.I.6
-
30
-
-
33747798962
-
Non-coding RNA in fly dosage compensation
-
Deng, X. and Meller, V.H. (2006) Non-coding RNA in fly dosage compensation. Trends Biochem. Sci. 31, 526-532
-
(2006)
Trends Biochem. Sci
, vol.31
, pp. 526-532
-
-
Deng, X.1
Meller, V.H.2
-
31
-
-
0036500632
-
The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex
-
Meller, V.H. and Rattner, B.P. (2002) The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex. EMBO J. 21, 1084-1091
-
(2002)
EMBO J.
, vol.21
, pp. 1084-1091
-
-
Meller, V.H.1
Rattner, B.P.2
-
32
-
-
0026489906
-
The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
-
Brockdorff, N., Ashworth, A., Kay, G.F., McCabe, V.M., Norris, D.P., Cooper, P.J., Swift, S. and Rastan, S. (1992) The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell 71, 515-526
-
(1992)
Cell
, vol.71
, pp. 515-526
-
-
Brockdorff, N.1
Ashworth, A.2
Kay, G.F.3
McCabe, V.M.4
Norris, D.P.5
Cooper, P.J.6
Swift, S.7
Rastan, S.8
-
33
-
-
0030026001
-
Requirement for Xist in X chromosome inactivation
-
Penny, G.D., Kay, G.F., Sheardown, S.A., Rastan, S. and Brockdorff, N. (1996) Requirement for Xist in X chromosome inactivation. Nature 379, 131-137
-
(1996)
Nature
, vol.379
, pp. 131-137
-
-
Penny, G.D.1
Kay, G.F.2
Sheardown, S.A.3
Rastan, S.4
Brockdorff, N.5
-
34
-
-
17744388101
-
Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence
-
Nesterova, T.B., Slobodyanyuk, S.Y., Elisaphenko, E.A., Shevchenko, A.I., Johnston, C., Pavlova, M.E., Rogozin, I.B., Kolesnikov, N.N., Brockdorff, N. and Zakian, S.M. (2001) Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence. Genome Res. 11, 833-849
-
(2001)
Genome Res
, vol.11
, pp. 833-849
-
-
Nesterova, T.B.1
Slobodyanyuk, S.Y.2
Elisaphenko, E.A.3
Shevchenko, A.I.4
Johnston, C.5
Pavlova, M.E.6
Rogozin, I.B.7
Kolesnikov, N.N.8
Brockdorff, N.9
Zakian, S.M.10
-
35
-
-
0032932528
-
Tsix, a gene antisense to Xist at the X-inactivation centre
-
Lee, J.T., Davidow, L.S. and Warshawsky, D. (1999) Tsix, a gene antisense to Xist at the X-inactivation centre. Nat. Genet. 21, 400-404
-
(1999)
Nat. Genet
, vol.21
, pp. 400-404
-
-
Lee, J.T.1
Davidow, L.S.2
Warshawsky, D.3
-
36
-
-
0037075032
-
The non-coding Air RNA is required for silencing autosomal imprinted genes
-
Sleutels, F., Zwart, R. and Barlow, D.P. (2002) The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 415, 810-813
-
(2002)
Nature
, vol.415
, pp. 810-813
-
-
Sleutels, F.1
Zwart, R.2
Barlow, D.P.3
-
37
-
-
0030694713
-
Imprinted expression of the Igf2r gene depends on an intronic CpG island
-
Wutz, A., Smrzka, O.W., Schweifer, N., Schellander, K., Wagner, E.F. and Barlow, D.P. (1997) Imprinted expression of the Igf2r gene depends on an intronic CpG island. Nature 389, 745-749
-
(1997)
Nature
, vol.389
, pp. 745-749
-
-
Wutz, A.1
Smrzka, O.W.2
Schweifer, N.3
Schellander, K.4
Wagner, E.F.5
Barlow, D.P.6
-
38
-
-
56549111129
-
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano, T., Mitchell, J.A., Sanz, L.A., Pauler, F.M., Ferguson-Smith, A.C., Feil, R. and Fraser, P. (2008) The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 322, 1717-1720
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
Pauler, F.M.4
Ferguson-Smith, A.C.5
Feil, R.6
Fraser, P.7
-
39
-
-
29444457713
-
Rapid evolution of noncoding RNAs. Lack of conservation does not mean lack of function
-
Pang, K.C., Frith, M.C. and Mattick, J.S. (2006) Rapid evolution of noncoding RNAs. Lack of conservation does not mean lack of function. Trends Genet. 22, 1-5
-
(2006)
Trends Genet
, vol.22
, pp. 1-5
-
-
Pang, K.C.1
Frith, M.C.2
Mattick, J.S.3
-
40
-
-
33744804277
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
-
Feng, J., Bi, C., Clark, B.S., Mady, R., Shah, P. and Kohtz, J.D. (2006) The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Genes Dev 20, 1470-1484
-
(2006)
Genes Dev
, vol.20
, pp. 1470-1484
-
-
Feng, J.1
Bi, C.2
Clark, B.S.3
Mady, R.4
Shah, P.5
Kohtz, J.D.6
-
41
-
-
68149182666
-
Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry
-
Bond, A.M., Vangompel, M.J.W., Sametsky, E.A., Clark, M.F., Savage, J.C., Disterhoft, J.F. and Kohtz, J.D. (2009) Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry. Nat. Neurosci. 12, 1020-1027
-
(2009)
Nat. Neurosci
, vol.12
, pp. 1020-1027
-
-
Bond, A.M.1
Vangompel, M.J.W.2
Sametsky, E.A.3
Clark, M.F.4
Savage, J.C.5
Disterhoft, J.F.6
Kohtz, J.D.7
-
42
-
-
70149123708
-
Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain
-
Ponjavic, J., Oliver, P.L., Lunter, G. and Ponting, C.P. (2009) Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain. PLoS Genetics 5, e1000617
-
(2009)
PLoS Genetics
, vol.5
-
-
Ponjavic, J.1
Oliver, P.L.2
Lunter, G.3
Ponting, C.P.4
-
43
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Ørom, U.A., Derrien, T., Beringer, M., Gumireddy, K., Gardini, A., Bussotti, G., Lai, F., Zytnicki, M., Notredame, C., Huang, Q. et al. (2010) Long noncoding RNAs with enhancer-like function in human cells. Cell 143, 46-58
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Ørom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
Lai, F.7
Zytnicki, M.8
Notredame, C.9
Huang, Q.10
-
44
-
-
84861402632
-
An RNA-independent linkage of noncoding transcription to long-range enhancer function
-
Yoo, E.J., Cooke, N.E. and Liebhaber, S.A. (2012) An RNA-independent linkage of noncoding transcription to long-range enhancer function. Mol. Cell. Biol. 32, 2020-2029
-
(2012)
Mol. Cell. Biol
, vol.32
, pp. 2020-2029
-
-
Yoo, E.J.1
Cooke, N.E.2
Liebhaber, S.A.3
-
45
-
-
80052869283
-
LincRNAs act in the circuitry controlling pluripotency and differentiation
-
Guttman, M., Donaghey, J., Carey, B.W., Garber, M., Grenier, J.K., Munson, G., Young, G., Lucas, A.B., Ach, R., Bruhn, L. et al. (2011) lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 477, 295-300
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
Munson, G.6
Young, G.7
Lucas, A.B.8
Ach, R.9
Bruhn, L.10
-
46
-
-
78650084265
-
Nuclear organization and dynamics of 7SK RNA in regulating gene expression
-
Prasanth, K.V., Camiolo, M., Chan, G., Tripathi, V., Denis, L., Nakamura, T., Hübner, M.R. and Spector, D.L. (2010) Nuclear organization and dynamics of 7SK RNA in regulating gene expression. Mol. Biol. Cell 21, 4184-4196
-
(2010)
Mol. Biol. Cell
, vol.21
, pp. 4184-4196
-
-
Prasanth, K.V.1
Camiolo, M.2
Chan, G.3
Tripathi, V.4
Denis, L.5
Nakamura, T.6
Hübner, M.R.7
Spector, D.L.8
-
47
-
-
84863189548
-
The Drosophila 7SK snRNP and the essential role of dHEXIM in development
-
Nguyen, D., Krueger, B.J., Sedore, S.C., Brogie, J.E., Rogers, J.T., Rajendra, T.K., Saunders, A., Matera, A.G., Lis, J.T., Uguen, P. and Price, D.H. (2012) The Drosophila 7SK snRNP and the essential role of dHEXIM in development. Nucleic Acids Res. 40, 5283-5297
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5283-5297
-
-
Nguyen, D.1
Krueger, B.J.2
Sedore, S.C.3
Brogie, J.E.4
Rogers, J.T.5
Rajendra, T.K.6
Saunders, A.7
Matera, A.G.8
Lis, J.T.9
Uguen, P.10
Price, D.H.11
-
48
-
-
0030133914
-
The 93D (hsr-omega) locus of Drosophila, non-coding gene with house-keeping functions
-
Lakhotia, S.C. and Sharma, A. (1996) The 93D (hsr-omega) locus of Drosophila, non-coding gene with house-keeping functions. Genetica 97, 339-348
-
(1996)
Genetica
, vol.97
, pp. 339-348
-
-
Lakhotia, S.C.1
Sharma, A.2
-
49
-
-
0020365115
-
Deficiency mapping of the 93D heat-shock locus in Drosophila melanogaster
-
Mohler, J. and Pardue, M.L. (1982) Deficiency mapping of the 93D heat-shock locus in Drosophila melanogaster. Chromosoma 86, 457-467
-
(1982)
Chromosoma
, vol.86
, pp. 457-467
-
-
Mohler, J.1
Pardue, M.L.2
-
50
-
-
24644481406
-
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT
-
Willingham, A.T., Orth, A.P., Batalov, S., Peters, E.C., Wen, B.G., Aza-Blanc, P., Hogenesch, J.B. and Schultz, P.G. (2005) A strategy for probing the function of noncoding RNAs finds a repressor of NFAT. Science 309, 1570-1573
-
(2005)
Science
, vol.309
, pp. 1570-1573
-
-
Willingham, A.T.1
Orth, A.P.2
Batalov, S.3
Peters, E.C.4
Wen, B.G.5
Aza-Blanc, P.6
Hogenesch, J.B.7
Schultz, P.G.8
-
51
-
-
77952581350
-
Long non-coding RNAs in nervous system function and disease
-
Qureshi, I.A., Mattick, J.S. and Mehler, M.F. (2010) Long non-coding RNAs in nervous system function and disease. Brain Res. 1338, 20-35
-
(2010)
Brain Res
, vol.1338
, pp. 20-35
-
-
Qureshi, I.A.1
Mattick, J.S.2
Mehler, M.F.3
-
52
-
-
77952363272
-
Chromosome 9p21 SNPs associated with multiple disease phenotypes correlate with ANRIL expression
-
Cunnington, M.S., Santibanez Koref, M., Mayosi, B.M., Burn, J. and Keavney, B. (2010) Chromosome 9p21 SNPs associated with multiple disease phenotypes correlate with ANRIL expression. PLoS Genet. 6, e1000899
-
(2010)
PLoS Genet
, vol.6
-
-
Cunnington, M.S.1
Santibanez Koref, M.2
Mayosi, B.M.3
Burn, J.4
Keavney, B.5
-
53
-
-
77953096072
-
Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a
-
Yap, K.L., Li, S., Muñoz-Cabello, A.M., Raguz, S., Zeng, L., Mujtaba, S., Gil, J., Walsh, M.J. and Zhou, M.M. (2010) Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. Mol. Cell 38, 662-674
-
(2010)
Mol. Cell
, vol.38
, pp. 662-674
-
-
Yap, K.L.1
Li, S.2
Muñoz-Cabello, A.M.3
Raguz, S.4
Zeng, L.5
Mujtaba, S.6
Gil, J.7
Walsh, M.J.8
Zhou, M.M.9
-
54
-
-
79955468280
-
Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene
-
Kotake, Y., Nakagawa, T., Kitagawa, K., Suzuki, S., Liu, N., Kitagawa, M. and Xiong, Y. (2011) Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene. Oncogene 30, 1956-1962
-
(2011)
Oncogene
, vol.30
, pp. 1956-1962
-
-
Kotake, Y.1
Nakagawa, T.2
Kitagawa, K.3
Suzuki, S.4
Liu, N.5
Kitagawa, M.6
Xiong, Y.7
-
55
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu, W., Gius, D., Onyango, P., Muldoon-Jacobs, K., Karp, J., Feinberg, A.P. and Cui, H. (2008) Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature 451, 202-206
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
Muldoon-Jacobs, K.4
Karp, J.5
Feinberg, A.P.6
Cui, H.7
-
56
-
-
0344429906
-
MALAT-1, a novel noncoding RNA, and thymosin β4 predict metastasis and survival in early-stage non-small cell lung cancer
-
Ji, P., Diederichs, S., Wang, W., Böing, S., Metzger, R., Schneider, P.M., Tidow, N., Brandt, B., Buerger, H., Bulk, E. et al. (2003) MALAT-1, a novel noncoding RNA, and thymosin β4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 22, 8031-8041
-
(2003)
Oncogene
, vol.22
, pp. 8031-8041
-
-
Ji, P.1
Diederichs, S.2
Wang, W.3
Böing, S.4
Metzger, R.5
Schneider, P.M.6
Tidow, N.7
Brandt, B.8
Buerger, H.9
Bulk, E.10
-
57
-
-
33846950027
-
A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas
-
Lin, R., Maeda, S., Liu, C., Karin, M. and Edgington, T.S. (2007) A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas. Oncogene 26, 851-858
-
(2007)
Oncogene
, vol.26
, pp. 851-858
-
-
Lin, R.1
Maeda, S.2
Liu, C.3
Karin, M.4
Edgington, T.S.5
-
58
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi, V., Ellis, J.D., Shen, Z., Song, D.Y., Pan, Q., Watt, A.T., Freier, S.M., Bennett, C.F., Sharma, A., Bubulya, P.A. et al. (2010) The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol. Cell 39, 925-938
-
(2010)
Mol. Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
Song, D.Y.4
Pan, Q.5
Watt, A.T.6
Freier, S.M.7
Bennett, C.F.8
Sharma, A.9
Bubulya, P.A.10
|