메뉴 건너뛰기




Volumn , Issue , 2013, Pages 1-31

Discovery and seminal developments in the CRISPR field

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84879009908     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-642-34657-6     Document Type: Chapter
Times cited : (28)

References (109)
  • 1
    • 73149087453 scopus 로고    scopus 로고
    • Transcription profile of Thermus thermophilus CRISPR systems after phage infection
    • Agari Y, Sakamoto K, Tamakoshi M, Oshima T, Kuramitsu S, Shinkai A (2009) Transcription profile of Thermus thermophilus CRISPR systems after phage infection. J Mol Biol 395:270-281
    • (2009) J Mol Biol , vol.395 , pp. 270-281
    • Agari, Y.1    Sakamoto, K.2    Tamakoshi, M.3    Oshima, T.4    Kuramitsu, S.5    Shinkai, A.6
  • 2
    • 77954948121 scopus 로고    scopus 로고
    • Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus
    • Aklujkar M, Lovley DR (2010) Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus. BMC Evol Biol 10:230
    • (2010) BMC Evol Biol , vol.10 , pp. 230
    • Aklujkar, M.1    Lovley, D.R.2
  • 3
    • 44449133775 scopus 로고    scopus 로고
    • Virus population dynamics and acquired virus resistance in natural microbial communities
    • Andersson AF, Banfield JF (2008) Virus population dynamics and acquired virus resistance in natural microbial communities. Science 320:1047-1050
    • (2008) Science , vol.320 , pp. 1047-1050
    • Andersson, A.F.1    Banfield, J.F.2
  • 4
    • 10244229691 scopus 로고    scopus 로고
    • Spacer oligonucleotide typing of Mycobacterium bovis strains from cattle and other animals: A tool for studying epidemiology of tuberculosis
    • Aranaz A, Liebana E, Mateos A, Dominguez L, Vidal D, Domingo M et al (1996) Spacer oligonucleotide typing of Mycobacterium bovis strains from cattle and other animals: a tool for studying epidemiology of tuberculosis. J Clin Microbiol 34:2734-2740
    • (1996) J Clin Microbiol , vol.34 , pp. 2734-2740
    • Aranaz, A.1    Liebana, E.2    Mateos, A.3    Dominguez, L.4    Vidal, D.5    Domingo, M.6
  • 5
    • 78651083184 scopus 로고    scopus 로고
    • A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
    • Babu M, Beloglazova N, Flick R, Graham C, Skarina T, Nocek B et al (2011) A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol Microbiol 79:484-502
    • (2011) Mol Microbiol , vol.79 , pp. 484-502
    • Babu, M.1    Beloglazova, N.2    Flick, R.3    Graham, C.4    Skarina, T.5    Nocek, B.6
  • 7
    • 81255160844 scopus 로고    scopus 로고
    • Structure and activity of the Cas3 HD nuclease MJ0384 an effector enzyme of the CRISPR interference
    • Beloglazova N, Petit P, Flick R, Brown G, Savchenko A, Yakunin AF (2011) Structure and activity of the Cas3 HD nuclease MJ0384 an effector enzyme of the CRISPR interference. EMBO J 30:4616-4627
    • (2011) EMBO J , vol.30 , pp. 4616-4627
    • Beloglazova, N.1    Petit, P.2    Flick, R.3    Brown, G.4    Savchenko, A.5    Yakunin, A.F.6
  • 8
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • Bolotin A, Quinquis B, Sorokin A, Ehrlich SD (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiol 151:2551-2561
    • (2005) Microbiol , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 10
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon Methanococcus jannaschii
    • Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG et al (1996) Complete genome sequence of the methanogenic archaeon Methanococcus jannaschii. Science 273:1058-1073
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1    White, O.2    Olsen, G.J.3    Zhou, L.4    Fleischmann, R.D.5    Sutton, G.G.6
  • 11
    • 79960393323 scopus 로고    scopus 로고
    • Non-identity-mediated CRISPR-bacteriophage interaction mediated via the Csy and Cas3 proteins
    • Cady KC, O’Toole GA (2011) Non-identity-mediated CRISPR-bacteriophage interaction mediated via the Csy and Cas3 proteins. J Bacteriol 193:3433-3445
    • (2011) J Bacteriol , vol.193 , pp. 3433-3445
    • Cady, K.C.1    O’Toole, G.A.2
  • 12
    • 58049191229 scopus 로고    scopus 로고
    • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
    • Carte J, Wang R, Li H, Terns RM, Terns MP (2008) Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 22:3489-3496
    • (2008) Genes Dev , vol.22 , pp. 3489-3496
    • Carte, J.1    Wang, R.2    Li, H.3    Terns, R.M.4    Terns, M.P.5
  • 14
    • 77954423847 scopus 로고    scopus 로고
    • Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria
    • Chakraborty S, Snijders AP, Chakravorty R, Ahmed M, Tarek AM, Hossain MA (2010) Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. Mol Phylogenet Evol 56:878-887
    • (2010) Mol Phylogenet Evol , vol.56 , pp. 878-887
    • Chakraborty, S.1    Snijders, A.P.2    Chakravorty, R.3    Ahmed, M.4    Tarek, A.M.5    Hossain, M.A.6
  • 16
    • 33645313846 scopus 로고    scopus 로고
    • Chromosome evolution in the thermotogales: Large-scale inversions and strain diversification of CRISPR sequences
    • Deboy RT, Mongodin EF, Emerson JB, Nelson KE (2006) Chromosome evolution in the thermotogales: large-scale inversions and strain diversification of CRISPR sequences. J Bacteriol 188:2364-2374
    • (2006) J Bacteriol , vol.188 , pp. 2364-2374
    • Deboy, R.T.1    Mongodin, E.F.2    Emerson, J.B.3    Nelson, K.E.4
  • 18
    • 84859294085 scopus 로고    scopus 로고
    • Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus
    • Deng L, Kenchappa CS, Peng X, She Q, Garrett RA (2012) Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus. Nucleic Acids Res 40:2470-2480
    • (2012) Nucleic Acids Res , vol.40 , pp. 2470-2480
    • Deng, L.1    Kenchappa, C.S.2    Peng, X.3    She, Q.4    Garrett, R.A.5
  • 21
    • 67849116792 scopus 로고    scopus 로고
    • Spoligotyping for molecular epidemiology of the Mycobacterium tuberculosis complex
    • Driscoll JR (2009) Spoligotyping for molecular epidemiology of the Mycobacterium tuberculosis complex. Methods Mol Biol 551:117-128
    • (2009) Methods Mol Biol , vol.551 , pp. 117-128
    • Driscoll, J.R.1
  • 22
    • 84866023604 scopus 로고    scopus 로고
    • Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms
    • Erdmann S, Garrett RA (2012) Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol Microbiol 85:1044-1056
    • (2012) Mol Microbiol , vol.85 , pp. 1044-1056
    • Erdmann, S.1    Garrett, R.A.2
  • 23
    • 0026917837 scopus 로고
    • Sequence and transcription analysis of mitochondrial plasmids isolated from cytoplasmic male-sterile lines of Vicia faba
    • Flamand MC, Goblet JP, Duc G, Briquet M, Boutry M (1992) Sequence and transcription analysis of mitochondrial plasmids isolated from cytoplasmic male-sterile lines of Vicia faba. Plant Mol Biol 19:913-923
    • (1992) Plant Mol Biol , vol.19 , pp. 913-923
    • Flamand, M.C.1    Goblet, J.P.2    Duc, G.3    Briquet, M.4    Boutry, M.5
  • 26
    • 80755153697 scopus 로고    scopus 로고
    • Archaeal CRISPR-based immune systems: Exchangeable functional modules
    • Garrett RA, Vestergaard G, Shah SA (2011) Archaeal CRISPR-based immune systems: exchangeable functional modules. Trends Microbiol 19:549-556
    • (2011) Trends Microbiol , vol.19 , pp. 549-556
    • Garrett, R.A.1    Vestergaard, G.2    Shah, S.A.3
  • 28
    • 33744941078 scopus 로고    scopus 로고
    • The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
    • Godde JS, Bickerton A (2006) The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol 62:718-729
    • (2006) J Mol Evol , vol.62 , pp. 718-729
    • Godde, J.S.1    Bickerton, A.2
  • 29
    • 8744225606 scopus 로고    scopus 로고
    • Genomic comparison of archaeal conjugative plasmids from Sulfolobus
    • Greve B, Jensen S, Brügger K, Zillig W, Garrett RA (2004) Genomic comparison of archaeal conjugative plasmids from Sulfolobus. Archaea 1:231-239
    • (2004) Archaea , vol.1 , pp. 231-239
    • Greve, B.1    Jensen, S.2    Brügger, K.3    Zillig, W.4    Garrett, R.A.5
  • 30
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • Grissa I, Vergnaud G, Pourcel C (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinf 8:172
    • (2007) BMC Bioinf , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 31
    • 0027724480 scopus 로고
    • Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel typing method
    • Groenen PM, Bunschoten AE, van Soolingen D, van Embden JD (1993) Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel typing method. Mol Microbiol 10:1057-1065
    • (1993) Mol Microbiol , vol.10 , pp. 1057-1065
    • Groenen, P.M.1    Bunschoten, A.E.2    Van Soolingen, D.3    Van Embden, J.D.4
  • 32
    • 78650244167 scopus 로고    scopus 로고
    • Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers
    • Gudbergsdottir S, Deng L, Chen Z, Jensen JVK, Jensen LR, She Q, Garrett RA (2011) Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol Microbiol 79:35-49
    • (2011) Mol Microbiol , vol.79 , pp. 35-49
    • Gudbergsdottir, S.1    Deng, L.2    Chen, Z.3    Jensen, J.4    Jensen, L.R.5    She, Q.6    Garrett, R.A.7
  • 33
    • 79952803560 scopus 로고    scopus 로고
    • Genome analyses of icelandic strains of Sulfolobus islandicus model organisms for genetic and virus-host interaction studies
    • Guo L, Brügger K, Liu C, Shah SA, Zheng H, Zhu Y et al (2011) Genome analyses of icelandic strains of Sulfolobus islandicus model organisms for genetic and virus-host interaction studies. J Bacteriol 193:1672-1680
    • (2011) J Bacteriol , vol.193 , pp. 1672-1680
    • Guo, L.1    Brügger, K.2    Liu, C.3    Shah, S.A.4    Zheng, H.5    Zhu, Y.6
  • 34
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft DH, Selengut J, Mongodin EF, Nelson KE (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 1:474-483
    • (2005) Plos Comput Biol , vol.1 , pp. 474-483
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 35
    • 57049149666 scopus 로고    scopus 로고
    • Prokaryotic silencing (Psi)RNAs in Pyrococcus furiosus
    • Hale C, Kleppe K, Terns RM, Terns MP (2008) Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus. RNA 14:2572-2579
    • (2008) RNA , vol.14 , pp. 2572-2579
    • Hale, C.1    Kleppe, K.2    Terns, R.M.3    Terns, M.P.4
  • 36
  • 37
    • 84856792673 scopus 로고    scopus 로고
    • Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs
    • Hale CR, Majumdar S, Elmore J, Pfister N, Compton M, Olson S et al (2012) Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs. Mol Cell 45:292-302
    • (2012) Mol Cell , vol.45 , pp. 292-302
    • Hale, C.R.1    Majumdar, S.2    Elmore, J.3    Pfister, N.4    Compton, M.5    Olson, S.6
  • 38
    • 78650727966 scopus 로고    scopus 로고
    • Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion
    • Hao W, Richardson AO, Zheng Y, Palmer JD (2010) Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion. Proc Natl Acad Sci USA 107:21576-21581
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 21576-21581
    • Hao, W.1    Richardson, A.O.2    Zheng, Y.3    Palmer, J.D.4
  • 39
    • 84855475577 scopus 로고    scopus 로고
    • Mature clustered regularly interspaced short palindromic repeats RNA (CrRNA) length is measured by a ruler mechanism anchored at the precursor processing site
    • Hatoum-Aslan A, Maniv I, Marraffini LA (2011) Mature clustered regularly interspaced short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site. Proc Natl Acad Sci U S A 108:21218-21222
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 21218-21222
    • Hatoum-Aslan, A.1    Maniv, I.2    Marraffini, L.A.3
  • 40
    • 77956498326 scopus 로고    scopus 로고
    • Sequence-and structurespecific RNA processing by a CRISPR endonuclease
    • Haurwitz RE, Jinek M, Wiedenheft B, Zhou K, Doudna JA (2010) Sequence-and structurespecific RNA processing by a CRISPR endonuclease. Science 329:1355-1358
    • (2010) Science , vol.329 , pp. 1355-1358
    • Haurwitz, R.E.1    Jinek, M.2    Wiedenheft, B.3    Zhou, K.4    Doudna, J.A.5
  • 41
    • 77958590947 scopus 로고    scopus 로고
    • CRISPR associated diversity within a population of Sulfolobus islandicus
    • Held NL, Herrera A, Quiroz HC, Whitaker RJ (2010) CRISPR associated diversity within a population of Sulfolobus islandicus. PLoS ONE 5:e12988
    • (2010) Plos ONE , vol.5
    • Held, N.L.1    Herrera, A.2    Quiroz, H.C.3    Whitaker, R.J.4
  • 42
    • 0025826178 scopus 로고
    • Insertion element IS987 from Mycobacterium bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium tuberculosis complex strains
    • Hermans PW, van Soolingen D, Bik EM, de Haas PE, Dale JW, van Embden JD (1991) Insertion element IS987 from Mycobacterium bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium tuberculosis complex strains. Infect Immun 59:2695-2705
    • (1991) Infect Immun , vol.59 , pp. 2695-2705
    • Hermans, P.W.1    Van Soolingen, D.2    Bik, E.M.3    De Haas, P.E.4    Dale, J.W.5    Van Embden, J.D.6
  • 43
    • 0032956596 scopus 로고    scopus 로고
    • Rapid molecular genetic subtyping of serotype M1 group A Streptococcus strains
    • Hoe N, Nakashima K, Grigsby D, Pan X, Dou SJ, Naidich S et al (1999) Rapid molecular genetic subtyping of serotype M1 group A Streptococcus strains. Emerg Infect Dis 5:254-263
    • (1999) Emerg Infect Dis , vol.5 , pp. 254-263
    • Hoe, N.1    Nakashima, K.2    Grigsby, D.3    Pan, X.4    Dou, S.J.5    Naidich, S.6
  • 44
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas the immune system of bacteria and archaea
    • Horvath P, Barrangou R (2010) CRISPR/Cas the immune system of bacteria and archaea. Science 327:167-170
    • (2010) Science , vol.327 , pp. 167-170
    • Horvath, P.1    Barrangou, R.2
  • 46
    • 0023600057 scopus 로고
    • Nucleotide-sequence of the Iap gene responsible for alkaline-phosphatase isozyme conversion in Escherichia coli and identification of the gene product
    • Ishino Y, Shinagawa H, Makino K, Amemura M, Nakata A (1987) Nucleotide-sequence of the Iap gene responsible for alkaline-phosphatase isozyme conversion in Escherichia coli and identification of the gene product. J Bacteriol 169:5429-5433
    • (1987) J Bacteriol , vol.169 , pp. 5429-5433
    • Ishino, Y.1    Shinagawa, H.2    Makino, K.3    Amemura, M.4    Nakata, A.5
  • 47
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • Jansen R, Embden JD, Gaastra W, Schouls LM (2002a) Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43:1565-1575
    • (2002) Mol Microbiol , vol.43 , pp. 1565-1575
    • Jansen, R.1    Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 50
    • 0030911908 scopus 로고    scopus 로고
    • Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
    • Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S et al (1997) Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 35:907-914
    • (1997) J Clin Microbiol , vol.35 , pp. 907-914
    • Kamerbeek, J.1    Schouls, L.2    Kolk, A.3    Van Agterveld, M.4    Van Soolingen, D.5    Kuijper, S.6
  • 51
    • 0032579989 scopus 로고    scopus 로고
    • Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium Pyrococcus horikoshii OT3
    • Kawarabayasi Y, Sawada M, Horikawa H, Haikawa Y, Hino Y, Yamamoto S et al (1998) Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium Pyrococcus horikoshii OT3. DNA Res 5:55-76
    • (1998) DNA Res , vol.5 , pp. 55-76
    • Kawarabayasi, Y.1    Sawada, M.2    Horikawa, H.3    Haikawa, Y.4    Hino, Y.5    Yamamoto, S.6
  • 52
    • 0033616977 scopus 로고    scopus 로고
    • Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon Aeropyrum pernix K1
    • Kawarabayasi Y, Hino Y, Horikawa H, Yamazaki S, Haikawa Y, Jin-no K et al (1999) Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon Aeropyrum pernix K1. DNA Res 6:83-101
    • (1999) DNA Res , vol.6 , pp. 83-101
    • Kawarabayasi, Y.1    Hino, Y.2    Horikawa, H.3    Yamazaki, S.4    Haikawa, Y.5    Jin-No, K.6
  • 53
    • 0031458333 scopus 로고    scopus 로고
    • The complete genome sequence of the hyperthermophilic sulphate-reducing archaeon Archaeoglobus fulgidus
    • Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA et al (1997) The complete genome sequence of the hyperthermophilic sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390:364-370
    • (1997) Nature , vol.390 , pp. 364-370
    • Klenk, H.P.1    Clayton, R.A.2    Tomb, J.F.3    White, O.4    Nelson, K.E.5    Ketchum, K.A.6
  • 54
    • 35748974534 scopus 로고    scopus 로고
    • Evolutionary conservation of sequence and secondary structures in CRISPR repeats
    • Kunin V, Sorek R, Hugenholtz P (2007) Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 8:R61
    • (2007) Genome Biol , vol.8 , pp. R61
    • Kunin, V.1    Sorek, R.2    Hugenholtz, P.3
  • 58
    • 2342468069 scopus 로고    scopus 로고
    • Three replication origins in Sulfolobus species: Synchronous initiation of chromosome replication and asynchronous termination
    • Lundgren M, Andersson A, Chen L, Nilsson P, Bernander R (2004) Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination. Proc Natl Acad Sci U S A 101:7046-7051
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 7046-7051
    • Lundgren, M.1    Ersson, A.2    Chen, L.3    Nilsson, P.4    Bernander, R.5
  • 59
    • 0037079680 scopus 로고    scopus 로고
    • A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis
    • Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV (2002) A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res 30:482-496
    • (2002) Nucleic Acids Res , vol.30 , pp. 482-496
    • Makarova, K.S.1    Aravind, L.2    Grishin, N.V.3    Rogozin, I.B.4    Koonin, E.V.5
  • 60
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNAinterference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery functional analogies wiTheukaryotic RNAi and hypothetical mechanisms of action
    • Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV (2006) A putative RNAinterference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery functional analogies wiTheukaryotic RNAi and hypothetical mechanisms of action. Biol Direct 1:7
    • (2006) Biol Direct , vol.1 , pp. 7
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 62
    • 79953887840 scopus 로고    scopus 로고
    • In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon
    • Manica A, Zebec Z, Teichmann D, Schleper C (2011) In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon. Mol Microbiol 80:481-491
    • (2011) Mol Microbiol , vol.80 , pp. 481-491
    • Manica, A.1    Zebec, Z.2    Teichmann, D.3    Schleper, C.4
  • 63
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA
    • Marraffini LA, Sontheimer EJ (2008) CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA. Science 322:1843-1845
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 64
    • 75749118174 scopus 로고    scopus 로고
    • Self versus non-self discrimination during CRISPR RNAdirected immunity
    • Marraffini LA, Sontheimer EJ (2010) Self versus non-self discrimination during CRISPR RNAdirected immunity. Nature 463:568-571
    • (2010) Nature , vol.463 , pp. 568-571
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 65
    • 0342936503 scopus 로고    scopus 로고
    • Long tandemly repeated repetitive (LTRR) sequences in the filamentous cyanobacterium Anabaena sp. PCC2120
    • Masepohl B, Görlitz K, Böhme H (1996) Long tandemly repeated repetitive (LTRR) sequences in the filamentous cyanobacterium Anabaena sp. PCC2120. Biochim Biophys Acta 1307:26-30
    • (1996) Biochim Biophys Acta , vol.1307 , pp. 26-30
    • Masepohl, B.1    Görlitz, K.2    Böhme, H.3
  • 66
    • 80053528043 scopus 로고    scopus 로고
    • The human gut virome: Interindividual variation and dynamic response to diet
    • Minot S, Sinha R, Chen J, Li H, Keilbaugh SA, Wu GD et al (2011) The human gut virome: interindividual variation and dynamic response to diet. Genome Res 21:1616-1625
    • (2011) Genome Res , vol.21 , pp. 1616-1625
    • Minot, S.1    Sinha, R.2    Chen, J.3    Li, H.4    Keilbaugh, S.A.5    Wu, G.D.6
  • 67
    • 0027237167 scopus 로고
    • Transcription at different salinities of Haloferax mediterranei sequences adjacent to partially modified PstI sites
    • Mojica FJM, Juez G, Rodríguez-Valera F (1993) Transcription at different salinities of Haloferax mediterranei sequences adjacent to partially modified PstI sites. Mol Microbiol 9:613-621
    • (1993) Mol Microbiol , vol.9 , pp. 613-621
    • Mojica, F.1    Juez, G.2    Rodríguez-Valera, F.3
  • 68
    • 0029166294 scopus 로고
    • Long stretches of short tandem repeats are present in the largest replicons of the archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning
    • Mojica FJM, Ferrer C, Juez G, Rodríguez-Valera F (1995) Long stretches of short tandem repeats are present in the largest replicons of the archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning. Mol Microbiol 17:85-93
    • (1995) Mol Microbiol , vol.17 , pp. 85-93
    • Mojica, F.1    Ferrer, C.2    Juez, G.3    Rodríguez-Valera, F.4
  • 69
    • 0034034401 scopus 로고    scopus 로고
    • Biological significance of a family of regularly spaced repeats in the genomes of archaea, bacteria and mitochondria
    • Mojica FJM, Díez-Villaseñor C, Soria E, Juez G (2000) Biological significance of a family of regularly spaced repeats in the genomes of archaea, bacteria and mitochondria. Mol Microbiol 36:244-246
    • (2000) Mol Microbiol , vol.36 , pp. 244-246
    • Mojica, F.1    Díez-Villaseñor, C.2    Soria, E.3    Juez, G.4
  • 70
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • Mojica FJM, Díez-Villaseñor C, García-Martínez J, Soria E (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 60:174-182
    • (2005) J Mol Evol , vol.60 , pp. 174-182
    • Mojica, F.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Soria, E.4
  • 71
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica FJM, Díez-Villaseñor C, García-Martínez J, Almendros C (2009) Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiol 155:733-740
    • (2009) Microbiol , vol.155 , pp. 733-740
    • Mojica, F.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Almendros, C.4
  • 72
    • 0024362982 scopus 로고
    • Unusual nucleotide arrangement with repeated sequences in the Escherichia coli K-12 chromosome
    • Nakata A, Amemura M, Makino K (1989) Unusual nucleotide arrangement with repeated sequences in the Escherichia coli K-12 chromosome. J Bacteriol 171:3553-3556
    • (1989) J Bacteriol , vol.171 , pp. 3553-3556
    • Nakata, A.1    Amemura, M.2    Makino, K.3
  • 73
    • 0033609333 scopus 로고    scopus 로고
    • Evidence for lateral gene transfer between archaea and bacteria from genome sequence of Thermotoga maritima
    • Nelson KE, Clayton RA, Gill SR, Gwinn ML, Dodson RJ, Haft DH et al (1999) Evidence for lateral gene transfer between archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399:323-329
    • (1999) Nature , vol.399 , pp. 323-329
    • Nelson, K.E.1    Clayton, R.A.2    Gill, S.R.3    Gwinn, M.L.4    Dodson, R.J.5    Haft, D.H.6
  • 74
    • 0037385757 scopus 로고    scopus 로고
    • Genus-specific protein binding to the large clusters of DNA repeats (Short regularly spaced repeats) present in Sulfolobus genomes
    • Peng X, Brügger M, Shen B, Chen LM, She QX, Garrett A (2003) Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes. J Bacteriol 185:2410-2417
    • (2003) J Bacteriol , vol.185 , pp. 2410-2417
    • Peng, X.1    Brügger, M.2    Shen, B.3    Chen, L.M.4    She, Q.X.5    Garrett, A.6
  • 75
    • 70350646816 scopus 로고    scopus 로고
    • CRISPR elements in the thermococcales: Evidence for associated horizontal gene transfer in Pyrococcus furiosus
    • Portillo MC, González JM (2009) CRISPR elements in the thermococcales: evidence for associated horizontal gene transfer in Pyrococcus furiosus. J Appl Genet 50:421-430
    • (2009) J Appl Genet , vol.50 , pp. 421-430
    • Portillo, M.C.1    González, J.M.2
  • 77
    • 15844390228 scopus 로고    scopus 로고
    • CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA and provide additional tools for evolutionary studies
    • Pourcel C, Salvignol G, Vergnaud G (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA and provide additional tools for evolutionary studies. Microbiol 151:653-663
    • (2005) Microbiol , vol.151 , pp. 653-663
    • Pourcel, C.1    Salvignol, G.2    Vergnaud, G.3
  • 78
    • 77949398275 scopus 로고    scopus 로고
    • Identification and characterization of E. Coli CRISPR-cas promoters and their silencing by H-NS
    • Pul U, Wurm R, Arslan Z, Geissen R, Hofmann N, Wagner R (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol 75:1495-1512
    • (2010) Mol Microbiol , vol.75 , pp. 1495-1512
    • Pul, U.1    Wurm, R.2    Arslan, Z.3    Geissen, R.4    Hofmann, N.5    Wagner, R.6
  • 79
    • 0035895278 scopus 로고    scopus 로고
    • Genetic architecture of thermal adaptation in Escherichia coli
    • Riehle MM, Bennett AF, Long AD (2001) Genetic architecture of thermal adaptation in Escherichia coli. Proc Natl Acad Sci U S A 98:525-530
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 525-530
    • Riehle, M.M.1    Bennett, A.F.2    Long, A.D.3
  • 80
  • 82
    • 79958825675 scopus 로고    scopus 로고
    • An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3
    • Sashital DG, Jinek M, Doudna JA (2011) An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3. Nat Struct Mol Biol 18:680-687
    • (2011) Nat Struct Mol Biol , vol.18 , pp. 680-687
    • Sashital, D.G.1    Jinek, M.2    Doudna, J.A.3
  • 83
    • 84861990812 scopus 로고    scopus 로고
    • Mechanism of foreign DNA selection in a bacterial adaptive immune system
    • Sashital DG, Wiedenheft B, Doudna JA (2012) Mechanism of foreign DNA selection in a bacterial adaptive immune system. Mol Cell 46:606-615
    • (2012) Mol Cell , vol.46 , pp. 606-615
    • Sashital, D.G.1    Wiedenheft, B.2    Doudna, J.A.3
  • 84
    • 33745550745 scopus 로고    scopus 로고
    • The multidrug-resistant human pathogen Clostridium difficile has a highly mobile mosaic genome
    • Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton N, Stabler R et al (2006) The multidrug-resistant human pathogen Clostridium difficile has a highly mobile mosaic genome. Nature Genet 38:779-786
    • (2006) Nature Genet , vol.38 , pp. 779-786
    • Sebaihia, M.1    Wren, B.W.2    Mullany, P.3    Fairweather, N.F.4    Minton, N.5    Stabler, R.6
  • 86
    • 79959963663 scopus 로고    scopus 로고
    • Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
    • Semenova E, Jore MM, Datsenko KA, Semenova A, Westra ER, Wanner B et al (2011) Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc Natl Acad Sci U S A 108:10098-10103
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 10098-10103
    • Semenova, E.1    Jore, M.M.2    Datsenko, K.A.3    Semenova, A.4    Westra, E.R.5    Wanner, B.6
  • 88
    • 78650254130 scopus 로고    scopus 로고
    • CRISPR/Cas and Cmr modules mobility and evolution of adaptive immune systems
    • Shah SA, Garrett RA (2011) CRISPR/Cas and Cmr modules mobility and evolution of adaptive immune systems. Res Microbiol 162:27-38
    • (2011) Res Microbiol , vol.162 , pp. 27-38
    • Shah, S.A.1    Garrett, R.A.2
  • 89
    • 59749085509 scopus 로고    scopus 로고
    • Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism
    • Shah SA, Hansen NR, Garrett RA (2009) Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism. Biochem Soc Trans 37:23-28
    • (2009) Biochem Soc Trans , vol.37 , pp. 23-28
    • Shah, S.A.1    Hansen, N.R.2    Garrett, R.A.3
  • 90
    • 0032213855 scopus 로고    scopus 로고
    • Genetic profile of pNOB8 from Sulfolobus: The first conjugative plasmid from an archaeon
    • She Q, Phan H, Garrett RA, Albers SV, Stedman KM, Zillig W (1998) Genetic profile of pNOB8 from Sulfolobus: the first conjugative plasmid from an archaeon. Extremophiles 2:417-425
    • (1998) Extremophiles , vol.2 , pp. 417-425
    • She, Q.1    Phan, H.2    Garrett, R.A.3    Albers, S.V.4    Stedman, K.M.5    Zillig, W.6
  • 92
    • 79953779608 scopus 로고    scopus 로고
    • Cas3 is a singlestranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
    • Sinkunas T, Gasiunas G, Fremaux C, Barrangou R, Horvath P, Siksnys V (2011) Cas3 is a singlestranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J 30:1335-1342
    • (2011) EMBO J , vol.30 , pp. 1335-1342
    • Sinkunas, T.1    Gasiunas, G.2    Fremaux, C.3    Barrangou, R.4    Horvath, P.5    Siksnys, V.6
  • 93
    • 15644383855 scopus 로고    scopus 로고
    • Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: Functional analysis and comparative genomics
    • Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T et al (1997) Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics. J Bacteriol 179:7135-7155
    • (1997) J Bacteriol , vol.179 , pp. 7135-7155
    • Smith, D.R.1    Doucette-Stamm, L.A.2    Deloughery, C.3    Lee, H.4    Dubois, J.5    Aldredge, T.6
  • 94
    • 77955085897 scopus 로고    scopus 로고
    • Self-targeting by CRISPR: Gene regulation or autoimmunity?
    • Stern A, Keren L, Wurtzel O, Amitai G, Sorek R (2010) Self-targeting by CRISPR: gene regulation or autoimmunity? Trends Genet 26:335-340
    • (2010) Trends Genet , vol.26 , pp. 335-340
    • Stern, A.1    Keren, L.2    Wurtzel, O.3    Amitai, G.4    Sorek, R.5
  • 97
    • 13144269598 scopus 로고    scopus 로고
    • Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus
    • Tang TH, Polacek N, Zywicki M, Huber H, Brügger K, Garrett RA et al (2005) Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus. Mol Microbiol 55:469-481
    • (2005) Mol Microbiol , vol.55 , pp. 469-481
    • Tang, T.H.1    Polacek, N.2    Zywicki, M.3    Huber, H.4    Brügger, K.5    Garrett, R.A.6
  • 98
    • 77956213914 scopus 로고    scopus 로고
    • The small slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
    • Touchon M, Rocha EP (2010) The small slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella. PLoS ONE 5:e11126
    • (2010) Plos ONE , vol.5
    • Touchon, M.1    Rocha, E.P.2
  • 99
    • 38149061877 scopus 로고    scopus 로고
    • Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses
    • Tyson GW, Banfield JF (2008) Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environ Microbiol 10:200-207
    • (2008) Environ Microbiol , vol.10 , pp. 200-207
    • Tyson, G.W.1    Banfield, J.F.2
  • 100
    • 34248331654 scopus 로고    scopus 로고
    • Regulation of dev an operon that includes genes essential for Myxococcus xanthus development and CRISPR-associated genes and repeats
    • Viswanathan P, Murphy K, Julien B, Garza AG, Kroos L (2007) Regulation of dev an operon that includes genes essential for Myxococcus xanthus development and CRISPR-associated genes and repeats. J Bacteriol 189:3738-3750
    • (2007) J Bacteriol , vol.189 , pp. 3738-3750
    • Viswanathan, P.1    Murphy, K.2    Julien, B.3    Garza, A.G.4    Kroos, L.5
  • 101
    • 79551694059 scopus 로고    scopus 로고
    • Interaction of the Cas6 riboendonuclease with CRISPR RNAs: Recognition and cleavage
    • Wang R, Preamplume G, Terns MP, Terns RM, Li H (2011) Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure 19:257-264
    • (2011) Structure , vol.19 , pp. 257-264
    • Wang, R.1    Preamplume, G.2    Terns, M.P.3    Terns, R.M.4    Li, H.5
  • 102
    • 77956621546 scopus 로고    scopus 로고
    • H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
    • Westra ER, Pul U, Heidrich N, Jore MM, Lundgren M, Stratmann T et al (2010) H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol Microbiol 77:1380-1393
    • (2010) Mol Microbiol , vol.77 , pp. 1380-1393
    • Westra, E.R.1    Pul, U.2    Heidrich, N.3    Jore, M.M.4    Lundgren, M.5    Stratmann, T.6
  • 103
    • 84861996069 scopus 로고    scopus 로고
    • CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by cascade and Cas3
    • Westra ER, van Erp PB, Künne T, Wong SP, Staals RH, Seegers CL et al (2012) CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by cascade and Cas3. Mol Cell 46:595-605
    • (2012) Mol Cell , vol.46 , pp. 595-605
    • Westra, E.R.1    Van Erp, P.B.2    Künne, T.3    Wong, S.P.4    Staals, R.H.5    Seegers, C.L.6
  • 104
    • 79960029056 scopus 로고    scopus 로고
    • RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
    • Wiedenheft B, van Duijn E, Bultema JB, Waghmare SP, Zhou K, Barendregt A et al (2011) RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions. Proc Natl Acad Sci U S A 108:10092-10097
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 10092-10097
    • Wiedenheft, B.1    Van Duijn, E.2    Bultema, J.B.3    Waghmare, S.P.4    Zhou, K.5    Barendregt, A.6
  • 106
    • 33745438016 scopus 로고    scopus 로고
    • Amplification of the entire kanamycin biosynthetic gene cluster during empirical strain improvement of Streptomyces kanamyceticus
    • Yanai K, Murakami T, Bibb M (2006) Amplification of the entire kanamycin biosynthetic gene cluster during empirical strain improvement of Streptomyces kanamyceticus. Proc Natl Acad Sci U S A 103:9661-9666
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 9661-9666
    • Yanai, K.1    Murakami, T.2    Bibb, M.3
  • 107
    • 84861639567 scopus 로고    scopus 로고
    • Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
    • Yosef I, Goren MG, Qimron U (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 40:5569-5576
    • (2012) Nucleic Acids Res , vol.40 , pp. 5569-5576
    • Yosef, I.1    Goren, M.G.2    Qimron, U.3
  • 108
    • 58149479228 scopus 로고    scopus 로고
    • Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa
    • Zegans ME, Wagner JC, Cady KC, Murphy DM, Hammond JH, O’Toole GA (2009) Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa. J Bacteriol 191:210-219
    • (2009) J Bacteriol , vol.191 , pp. 210-219
    • Zegans, M.E.1    Wagner, J.C.2    Cady, K.C.3    Murphy, D.M.4    Hammond, J.H.5    O’Toole, G.A.6
  • 109
    • 84856778250 scopus 로고    scopus 로고
    • Structure and mechanism of the Cmr complex of CRISPR-mediated antiviral immunity
    • Zhang J, Rouillon C, Kerou M, Reeks J, Brügger K, Graham S et al (2012) Structure and mechanism of the Cmr complex of CRISPR-mediated antiviral immunity. Mol Cell 45: 303-313
    • (2012) Mol Cell , vol.45 , pp. 303-313
    • Zhang, J.1    Rouillon, C.2    Kerou, M.3    Reeks, J.4    Brügger, K.5    Graham, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.