Spacer oligonucleotide typing of Mycobacterium bovis strains from cattle and other animals: A tool for studying epidemiology of tuberculosis

Journal of Clinical Microbiology

Volumn 34, Issue 11, 1996, Pages 2734-2740

  Aranaz, Alicia ^a   Liébana, Ernesto ^a   Mateos, Ana ^a   Dominguez, Lucas ^a   Vidal, Dolores ^b   Domingo, Mariano ^b   Gonzolez, Oscar ^c   Rodriguez Ferri, Elias F ^c   Bunschoten, Annelies E ^d   Van Embden, Jan D A ^d   Cousins, Debby ^e  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

^b UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^c UNIVERSITY OF LEÓN   (Spain)

^d NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^e DEPARTMENT OF AGRICULTURE AND FOOD WESTERN AUSTRALIA   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIUM DETECTION; BACTERIUM ISOLATION; CATTLE DISEASE; GENE SEQUENCE; MYCOBACTERIUM BOVIS; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; STRAIN DIFFERENCE; TUBERCULOSIS;

ANIMALIA; BACTERIA (MICROORGANISMS); BOS TAURUS; BOVINAE; CAPRA; CAPRA HIRCUS; CERVIDAE; FELIS CATUS; MYCOBACTERIUM; MYCOBACTERIUM BOVIS; OVIS; OVIS ARIES; SUS SCROFA;

EID: 10244229691     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.34.11.2734-2740.1996     Document Type: Article

References (44)

1. Bernabé, A., M. A. Gómez, J. A. Navarro, S. Gómez, J. Sánchez, J. Sidrach, and V. Menchén. 1991. Pathological changes of spontaneous dual infection of tuberculosis and paratuberculosis in goats. Small Ruminant Res. 5:377-390.
2. Bernabé, A., M. A. Gómez, J. A. Navarro, S. Gómez, J. Sánchez, J. Sidrach, V. Menchén, A. Vera and M. A. Sierra. 1991. Morphopathology of caprine tuberculosis. I. Pulmonary tuberculosis. An. Vet. (Murcia) 6-7:9-20.
3. Clifton-Hadley, R. S. and J. W. Wilesmith. 1991. Tuberculosis in deer: a review. Vet. Rec. 129:5-12.
4. Clifton-Hadley, R. S., J. W. Wilesmith, and F. A. Stuart. 1993. Mycobacterium bovis in the European badger (Meles meles): epidemiological findings in tuberculous badgers from a naturally infected population. Epidemiol. Infect. 111:9-19.
5. Collins, D. M., S. K. Erasmuson, D. M. Stephens, G. F. Yates, and G. W. de Lisle. 1993. DNA fingerprinting of Mycobacterium bovis strains by restriction fragment analysis and hybridization with insertion elements IS1081 and IS6110. J. Clin. Microbiol. 31:1143-1147.
6. Collins, D. M., D. M. Gabric, and G. W. de Lisle. 1987. Typing of Mycobacterium bovis isolates from cattle and other animals in the same locality. N. Z. Vet. J. 36:45-46.
7. Collins, D. M., and D. M. Stephens. 1991. Identification of an insertion sequence, IS1081, in Mycobacterium bovis. FEMS Microbiol. Lett. 83:11-16.
8. Cordes, D. O., J. A. Bullians, D. E. Lake, and M. E. Carter. 1981. Observations on tuberculosis caused by Mycobacterium bovis in sheep. N. Z. Vet. J. 29:60-62.
9. Cousins, D. V., B. R. Francis, R. Casey, and C. Mayberry. 1993. Mycobacterium bovis infection in a goat. Aust. Vet. J. 70:262-263.
10. Cousins, D. V., S. N. Williams, B. C. Ross, and T. M. Ellis. 1993. Use of a repetitive element isolated from Mycobacterium tuberculosis in hybridisation studies with Mycobacterium bovis: a new tool for epidemiological studies of bovine tuberculosis. Vet. Microbiol. 37:1-17.
11. Dwyer, B., K. Jackson, K. Raios, A. Sievers, E. Wilshire, and B. Ross. 1993. DNA restriction fragment analysis to define an extended cluster of tuberculosis in homeless men and their associates. J. Infect. Dis. 167:490-494.
12. Edlin, B. R., J. I. Tokars, M. H. Grieco, J. T. Crawford, J. Williams, E. M. Sordillo, K. R. Ong, J. O. Kilburn, S. W. Dooley, K. G. Castro, W. R. Jarvis, and S. D. Holmberg. 1992. An outbreak of multidrug-resistant tuberculosis among hospitalized patients with the acquired immunodeficiency syndrome. N. Engl. J. Med. 326:1514-1521.
13. Fomukong, N. G., T. H. Tang, S. Al-Maamary, W. A. Ibrahim, S. Ramayah, Z. F. Zainuddin, and J. W. Dale. 1994. Insertion sequence typing of Mycobacterium tuberculosis: characterisation of a widespread subtype with a single copy of IS6110. Tubercle Lung Dis. 75:435-440.
14. Genewein, A., A. Telenti, C. Bernasconi, C. Mordasini, S. Weiss, A. M. Maurer, H. L. Rieder, K. Schopfer, and T. Bodmer. 1993. Molecular approach to identifying route of transmission of tuberculosis in the community. Lancet 342:841-844.
15. Griffin, J. F. T., and G. S. Buchan. 1994. Aetiology, pathogenesis and diagnosis of Mycobacterium bovis. Vet. Microbiol. 40:193-205.
16. Groenen, P. M. A., Bunschoten, A. E., D. van Soolingen, and J. D. A. van Embden. 1993. Nature of the DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis: application for strain differentiation by a novel typing method. Mol. Microbiol. 10:1057-1065.
17. Gutiérrez, M., S. Samper, J. A. Gavigan, J. F. Garcia Marín, and C. Martín. 1995. Differentiation by molecular typing of Mycobacterium bovis strains causing tuberculosis in cattle and goats. J. Clin. Microbiol. 33:2953-2956.
18. Hermans, P. W. M., F. Messadi, H. Guebrexabher, D. van Soolingen, P. E. W. de Haas, H. Heersma, H. de Neeling, A. Ayoub, F. Portaels, D. Frommel, M. Zribi, and J. D. A. van Embden. 1995. Usefulness of DNA typing for global tuberculosis epidemiology. J. Infect. Dis. 171:1504-1513.
19. Hermans, P. W. M., D. van Soolingen, E. M. Bik, P. E. W. de Haas, J. W. Dale, and J. D. A. van Embden. 1991. The insertion element IS987 from Mycobacterium bovis BCG is located in a hot spot integration region for insertion elements in Mycobacterium tuberculosis complex strains. Infect. Immun. 59:2695-2705.
20. Hermans, P. W. M., D. van Soolingen, J. W. Dale, A. R. Schuitema, R. A. McAdam, D. Catty, and J. D. A. van Embden. 1990. Insertion element IS986 from Mycobacterium tuberculosis: a useful tool for diagnosis and epidemiology of tuberculosis. J. Clin. Microbiol. 28:2051-2058.
21. Kamerbeek, J., L. Schouls, M. van Agterveld, A. Kolk, S. Kuijper, D. van Soolingen, P. de Haas, A. Bunschoten, and J. van Embden. Rapid detection and simultaneous strain differentiation of Mycobacterium tuberculosis for diagnosis and control of tuberculosis. Submitted for publication.
22. Liébana, E., A. Aranaz, B. Francis, and D. Cousins. 1996. Assessment of genetic markers for specific differentiation within the Mycobacterium tuberculosis complex. J. Clin. Microbiol. 34:933-938.
23. Liébana, E., A. Aranaz, O. Gonzalez, M. Domingo, D. Vidal, A. Mateos, E. F. Rodriguez-Ferri, L. Dominguez, and D. Cousins. The insertion clement IS6110 is a useful tool for DNA fingerprinting of Mycobacterium bovis isolates from cattle and goats in Spain. Submitted for publication.
24. Little, T. W. A., P. F. Naylor, and J. W. Wilesmith. 1982. Laboratory study of Mycobacterium bovis infection in badgers and calves. Vet. Rec. 111:550-557.
25. Mazurek, G. H., M. D. Cave, K. D. Eisenach, R. J. Wallace, J. H. Bates, and J. T. Crawford. 1991. Chromosomal DNA fingerprint patterns produced with IS6110 as strain-specific markers for epidemiologic study of tuberculosis. J. Clin. Microbiol. 29:2030-2033.
26. McAdam, R. A., P. W. M. Hermans, D. van Soolingen, Z. F. Zainuddin, D. Catty, J. D. A. van Embden, and J. W. Dale. 1990. Characterisation of a Mycobacterium tuberculosis insertion sequence belonging to the IS3 family. Mol. Microbiol. 4:1607-1613.
27. Nolan, A. and J. W. Wilesmith. 1994. Tuberculosis in badgers (Meles meles). Vet. Microbiol. 40:179-191.
28. Otal, I., C. Martin, V. Vincent-Levy-Frebault, D. Thierry, and B. Giquel. 1991. Restriction fragment length polymorphism analysis using IS6110 as an epidemiological marker in tuberculosis. J. Clin. Microbiol. 29:1252-1254.
29. Ross, B. C., K. Raios, K. Jackson, and B. Dwyer. 1992. Molecular cloning of a highly repeated clement from Mycobacterium tuberculosis and its use as an epidemiological tool. J. Clin. Microbiol. 30:942-946.
30. Sahadevan, R., S. Narayanan, C. N. Paramasivan, R. Prabhakar, and P. R. Narayanan. 1995. Restriction fragment length polymorphism typing of clinical isolates of Mycobacterium tuberculosis from patients with pulmonary tuberculosis in Madras, India, by use of direct-repeat probe. J. Clin. Microbiol. 33:3037-3039.
31. Stumpff, C. D. 1982. Epidemiological study of an outbreak of bovine Tb confined elk herds. Proc. U.S. Anim. Health Assoc. 86:524-527.
32. Tabet, S. R., G. M. Goldbaum, T. M. Hooton, K. D. Eisenach, M. D. Cave, and C. M. Nolan. 1994. Restriction fragment length polymorphism analysis detecting a community-based tuberculosis outbreak among persons infected with human immunodeficiency virus. J. Infect. Dis. 169:189-192.
33. Thierry, D., A. Brisson-Noel, V. Vincent-Levy-Frebault, S. Nguyen, J. L. Guesdon, and B. Gicquel. 1990. Characterization of a Mycobacterium tuberculosis insertion sequence, IS6110, and its application in diagnosis. J. Clin. Microbiol. 28:2668-2673.
34. Thierry, D., M. D. Cave, K. D. Eisenach, J. T. Crawford, J. H. Bates, B. Gicquel, and J. L. Guesdon. 1990. IS6110, an IS-like element of Mycobacterium tuberculosis complex. Nucleic Acids Res. 18:188.
35. Thoen, C. O., A. G. Karlson, and E. M. Himes. 1984. Disease in domestic and feral animals: Mycobacterium tuberculosis complex, p. 1209-1236. In G. P. Kubica and L. G. Wayne (ed.), The mycobacteria: a sourcebook, pan B. Marcel Dekker, Inc., New York.
36. Van Embden, J. D. A., M. D. Cave, J. T. Crawford, J. W. Dale, K. D. Eisenach, B. Gicquel, P. Hermans, C. Martin, R. McAdam, T. M. Shinnick, and P. M. Small. 1993. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J. Clin. Microbiol. 31:406-409.
37. van Soolingen, D., P. E. W. de Haas, J. Haagsma, T. Eger, P. W. M. Hermans, V. Ritacco, A. Alito, and J. D. A. van Embden. 1994. Use of various genetic markers in differentiation of Mycobacterium bovis strains from animals and humans for studying epidemiology of bovine tuberculosis. J. Clin. Microbiol. 32:2425-2433.
38. van Soolingen, D., P. E. W. de Haas, P. W. M. Hermans, P. M. A. Groenen, and J. D. A. van Embden. 1993. Comparison of various repetitive elements as genetic markers for strain differentiation and epidemiology of Mycobacterium tuberculosis. J. Clin. Microbiol. 31:1987-1995.
39. van Soolingen, D., P. W. M. Hermans, P. E. W. de Haas, D. R. Soll, and J. D. A. van Embden. 1991. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence DNA-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J. Clin. Microbiol. 29:2578-2586.
40. van Soolingen, D., P. W. M. Hermans, P. E. W. de Haas, and J. D. A. van Embden. 1992. Insertion element IS1081-associated restriction fragment length polymorphism in Mycobacterium tuberculosis complex species: a reliable tool for recognizing Mycobacterium bovis BCG. J. Clin. Microbiol. 30:1772-1777.
41. van Soolingen, D., L. Quian, P. E. W. de Haas, J. T. Douglas, H. Traore, F. Portaels, H. Zi Qing, D. Enksaikan, P. Nymadawa, and J. D. A. van Embden. 1995. Predominance of a single genotype of Mycobacterium tuberculosis in countries of East Asia. J. Clin. Microbiol. 33:3234-3238.
42. Vestal, A. L. 1975. Procedures for the isolation and identification of mycobacteria. Training and Consultative Division. Center for Disease Control, Atlanta.
43. Wilton, S., and D. V. Cousins. 1992. Detection and identification of multiple mycobacterial pathogens by DNA amplification in a single tube. PCR Methods Appl. 1:269-273.
44. Yuen, L. K. W., B. C. Ross, K. M. Jackson, and B. Dwyer. 1993. Characterisation of Mycobacterium tuberculosis strains from Vietnamese patients by Southern blot hybridization. J. Clin. Microbiol. 31:1615-1618.