메뉴 건너뛰기




Volumn 8, Issue 12, 2012, Pages

Spreading of Heterochromatin Is Limited to Specific Families of Maize Retrotransposons

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H3;

EID: 84872051484     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1003127     Document Type: Article
Times cited : (134)

References (63)
  • 1
    • 33749522239 scopus 로고    scopus 로고
    • Genetics: Junk DNA as an evolutionary force
    • Biemont C, Vieira C, (2006) Genetics: Junk DNA as an evolutionary force. Nature 443 (7111):: 521-524 10.1038/443521a.
    • (2006) Nature , vol.443 , Issue.7111 , pp. 521-524
    • Biemont, C.1    Vieira, C.2
  • 2
    • 36249023071 scopus 로고    scopus 로고
    • A unified classification system for eukaryotic transposable elements
    • Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, et al. (2007) A unified classification system for eukaryotic transposable elements. Nat Rev Genet 8: 973-982.
    • (2007) Nat Rev Genet , vol.8 , pp. 973-982
    • Wicker, T.1    Sabot, F.2    Hua-Van, A.3    Bennetzen, J.L.4    Capy, P.5
  • 3
    • 80051997952 scopus 로고    scopus 로고
    • Dynamic interactions between transposable elements and their hosts
    • Levin HL, Moran JV, (2011) Dynamic interactions between transposable elements and their hosts. Nat Rev Genet 12: 615-627 10.1038/nrg3030; 10.1038/nrg3030.
    • (2011) Nat Rev Genet , vol.12 , pp. 615-627
    • Levin, H.L.1    Moran, J.V.2
  • 4
    • 79955082486 scopus 로고    scopus 로고
    • Transposable element origins of epigenetic gene regulation
    • Lisch D, Bennetzen JL, (2011) Transposable element origins of epigenetic gene regulation. Curr Opin Plant Biol 14: 156-161 10.1016/j.pbi.2011.01.003.
    • (2011) Curr Opin Plant Biol , vol.14 , pp. 156-161
    • Lisch, D.1    Bennetzen, J.L.2
  • 5
    • 79251581868 scopus 로고    scopus 로고
    • A brief history of the status of transposable elements: From junk DNA to major players in evolution
    • Biemont C, (2010) A brief history of the status of transposable elements: From junk DNA to major players in evolution. Genetics 186: 1085-1093 10.1534/genetics.110.124180.
    • (2010) Genetics , vol.186 , pp. 1085-1093
    • Biemont, C.1
  • 6
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • McClintock B, (1984) The significance of responses of the genome to challenge. Science 226: 792-801.
    • (1984) Science , vol.226 , pp. 792-801
    • McClintock, B.1
  • 7
    • 0035430971 scopus 로고    scopus 로고
    • From controlling elements to transposons: Barbara McClintock and the nobel prize
    • Comfort NC, (2001) From controlling elements to transposons: Barbara McClintock and the nobel prize. Trends Genet 17: 475-478.
    • (2001) Trends Genet , vol.17 , pp. 475-478
    • Comfort, N.C.1
  • 8
    • 0032760813 scopus 로고    scopus 로고
    • Regulatory changes as a consequence of transposon insertion
    • Girard L, Freeling M, (1999) Regulatory changes as a consequence of transposon insertion. Dev Genet 25: 291-296. 2-5.
    • (1999) Dev Genet , vol.25
    • Girard, L.1    Freeling, M.2
  • 9
    • 42349096534 scopus 로고    scopus 로고
    • Transposable elements and the evolution of regulatory networks
    • Feschotte C, (2008) Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9: 397-405 10.1038/nrg2337.
    • (2008) Nat Rev Genet , vol.9 , pp. 397-405
    • Feschotte, C.1
  • 10
    • 33646193822 scopus 로고    scopus 로고
    • Inherited epigenetic variation-revisiting soft inheritance
    • Richards EJ, (2006) Inherited epigenetic variation-revisiting soft inheritance. Nat Rev Genet 7: 395-401.
    • (2006) Nat Rev Genet , vol.7 , pp. 395-401
    • Richards, E.J.1
  • 11
    • 44349158512 scopus 로고    scopus 로고
    • Epigenetic interactions between transposons and genes: Lessons from plants
    • Weil C, Martienssen R, (2008) Epigenetic interactions between transposons and genes: Lessons from plants. Curr Opin Genet Dev 18: 188-192.
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 188-192
    • Weil, C.1    Martienssen, R.2
  • 12
    • 66449124318 scopus 로고    scopus 로고
    • Epigenetic regulation of transposable elements in plants
    • Lisch D, (2009) Epigenetic regulation of transposable elements in plants. Annu Rev Plant Biol 60: 43-66 10.1146/annurev.arplant.59.032607.092744.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 43-66
    • Lisch, D.1
  • 13
    • 0028245837 scopus 로고
    • Differential expression of a new dominant agouti allele (aiapy) is correlated with methylation state and is influenced by parental lineage
    • Michaud EJ, van Vugt MJ, Bultman SJ, Sweet HO, Davisson MT, et al. (1994) Differential expression of a new dominant agouti allele (aiapy) is correlated with methylation state and is influenced by parental lineage. Genes Dev 8: 1463-1472.
    • (1994) Genes Dev , vol.8 , pp. 1463-1472
    • Michaud, E.J.1    van Vugt, M.J.2    Bultman, S.J.3    Sweet, H.O.4    Davisson, M.T.5
  • 15
    • 0042572938 scopus 로고    scopus 로고
    • Transgenerational epigenetic inheritance
    • Rakyan V, Whitelaw E, (2003) Transgenerational epigenetic inheritance. Curr Biol 13: R6.
    • (2003) Curr Biol , vol.13
    • Rakyan, V.1    Whitelaw, E.2
  • 16
    • 10044244768 scopus 로고    scopus 로고
    • siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in arabidopsis
    • Liu J, He Y, Amasino R, Chen X, (2004) siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in arabidopsis. Genes Dev 18: 2873-2878 10.1101/gad.1217304.
    • (2004) Genes Dev , vol.18 , pp. 2873-2878
    • Liu, J.1    He, Y.2    Amasino, R.3    Chen, X.4
  • 17
    • 0033637356 scopus 로고    scopus 로고
    • The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene
    • Soppe WJ, Jacobsen SE, Alonso-Blanco C, Jackson JP, Kakutani T, et al. (2000) The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene. Mol Cell 6: 791-802.
    • (2000) Mol Cell , vol.6 , pp. 791-802
    • Soppe, W.J.1    Jacobsen, S.E.2    Alonso-Blanco, C.3    Jackson, J.P.4    Kakutani, T.5
  • 18
    • 34547747862 scopus 로고    scopus 로고
    • Heritable epigenetic mutation of a transposon-flanked arabidopsis gene due to lack of the chromatin-remodeling factor DDM1
    • Saze H, Kakutani T, (2007) Heritable epigenetic mutation of a transposon-flanked arabidopsis gene due to lack of the chromatin-remodeling factor DDM1. EMBO J 26: 3641-3652 10.1038/sj.emboj.7601788.
    • (2007) EMBO J , vol.26 , pp. 3641-3652
    • Saze, H.1    Kakutani, T.2
  • 19
    • 70350504436 scopus 로고    scopus 로고
    • A transposon-induced epigenetic change leads to sex determination in melon
    • Martin A, Troadec C, Boualem A, Rajab M, Fernandez R, et al. (2009) A transposon-induced epigenetic change leads to sex determination in melon. Nature 461: 1135-1138 10.1038/nature08498.
    • (2009) Nature , vol.461 , pp. 1135-1138
    • Martin, A.1    Troadec, C.2    Boualem, A.3    Rajab, M.4    Fernandez, R.5
  • 20
    • 40749109894 scopus 로고    scopus 로고
    • Shotgun bisulphite sequencing of the arabidopsis genome reveals DNA methylation patterning
    • Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, et al. (2008) Shotgun bisulphite sequencing of the arabidopsis genome reveals DNA methylation patterning. Nature 452: 215-219.
    • (2008) Nature , vol.452 , pp. 215-219
    • Cokus, S.J.1    Feng, S.2    Zhang, X.3    Chen, Z.4    Merriman, B.5
  • 21
    • 79961001437 scopus 로고    scopus 로고
    • Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in arabidopsis
    • Ahmed I, Sarazin A, Bowler C, Colot V, Quesneville H, (2011) Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in arabidopsis. Nucleic Acids Res 39: 6919-6931 10.1093/nar/gkr324.
    • (2011) Nucleic Acids Res , vol.39 , pp. 6919-6931
    • Ahmed, I.1    Sarazin, A.2    Bowler, C.3    Colot, V.4    Quesneville, H.5
  • 22
    • 68149144366 scopus 로고    scopus 로고
    • Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
    • Hollister JD, Gaut BS, (2009) Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res 19: 1419-1428 10.1101/gr.091678.109.
    • (2009) Genome Res , vol.19 , pp. 1419-1428
    • Hollister, J.D.1    Gaut, B.S.2
  • 23
    • 79952303685 scopus 로고    scopus 로고
    • Transposable elements and small RNAs contribute to gene expression divergence between arabidopsis thaliana and arabidopsis lyrata
    • Hollister JD, Smith LM, Guo YL, Ott F, Weigel D, et al. (2011) Transposable elements and small RNAs contribute to gene expression divergence between arabidopsis thaliana and arabidopsis lyrata. Proc Natl Acad Sci U S A 108: 2322-2327 10.1073/pnas.1018222108.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 2322-2327
    • Hollister, J.D.1    Smith, L.M.2    Guo, Y.L.3    Ott, F.4    Weigel, D.5
  • 24
    • 80053454411 scopus 로고    scopus 로고
    • Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms
    • doi:10.1371/journal.pgen.1002301
    • Rebollo R, Karimi MM, Bilenky M, Gagnier L, Miceli-Royer K, et al. (2011) Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms. PLoS Genet 7: e1002301 doi:10.1371/journal.pgen.1002301.
    • (2011) PLoS Genet , vol.7
    • Rebollo, R.1    Karimi, M.M.2    Bilenky, M.3    Gagnier, L.4    Miceli-Royer, K.5
  • 25
    • 84887212541 scopus 로고    scopus 로고
    • The effect of transposable element insertions on gene expression evolution in rodents
    • doi:10.1371/journal.pone.0004321
    • Pereira V, Enard D, Eyre-Walker A, (2009) The effect of transposable element insertions on gene expression evolution in rodents. PLoS ONE 4: e4321 doi:10.1371/journal.pone.0004321.
    • (2009) PLoS ONE , vol.4
    • Pereira, V.1    Enard, D.2    Eyre-Walker, A.3
  • 26
    • 0028485631 scopus 로고
    • Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA
    • Bennetzen JL, Schrick K, Springer PS, Brown WE, SanMiguel P, (1994) Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA. Genome 37: 565-576.
    • (1994) Genome , vol.37 , pp. 565-576
    • Bennetzen, J.L.1    Schrick, K.2    Springer, P.S.3    Brown, W.E.4    SanMiguel, P.5
  • 27
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, et al. (2009) The B73 maize genome: Complexity, diversity, and dynamics. Science 326: 1112-1115.
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1    Ware, D.2    Fulton, R.S.3    Stein, J.C.4    Wei, F.5
  • 29
    • 0034755894 scopus 로고    scopus 로고
    • Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome
    • Meyers B, Tingey S, Morgante M, (2001) Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Res 11: 1660-1676.
    • (2001) Genome Res , vol.11 , pp. 1660-1676
    • Meyers, B.1    Tingey, S.2    Morgante, M.3
  • 30
    • 73649140264 scopus 로고    scopus 로고
    • Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome
    • doi:10.1371/journal.pgen.1000732
    • Baucom RS, Estill JC, Chaparro C, Upshaw N, Jogi A, et al. (2009) Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome. PLoS Genet 5: e1000732 doi:10.1371/journal.pgen.1000732.
    • (2009) PLoS Genet , vol.5
    • Baucom, R.S.1    Estill, J.C.2    Chaparro, C.3    Upshaw, N.4    Jogi, A.5
  • 31
    • 73949127791 scopus 로고    scopus 로고
    • The polychromatic helitron landscape of the maize genome
    • Du C, Fefelova N, Caronna J, He L, Dooner HK, (2009) The polychromatic helitron landscape of the maize genome. Proc Natl Acad Sci U S A 106: 19916-19921 10.1073/pnas.0904742106.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 19916-19921
    • Du, C.1    Fefelova, N.2    Caronna, J.3    He, L.4    Dooner, H.K.5
  • 32
    • 0037047037 scopus 로고    scopus 로고
    • Intraspecific violation of genetic colinearity and its implications in maize
    • Fu H, Dooner HK, (2002) Intraspecific violation of genetic colinearity and its implications in maize. Proc Natl Acad Sci U S A 99: 9573-9578.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 9573-9578
    • Fu, H.1    Dooner, H.K.2
  • 34
    • 33845215653 scopus 로고    scopus 로고
    • Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus
    • Wang Q, Dooner HK, (2006) Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus. Proc Natl Acad Sci U S A 103: 17644-17649.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 17644-17649
    • Wang, Q.1    Dooner, H.K.2
  • 35
    • 0032743873 scopus 로고    scopus 로고
    • Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome
    • Rabinowicz PD, Schutz K, Dedhia N, Yordan C, Parnell LD, et al. (1999) Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nat Genet 23: 305-308.
    • (1999) Nat Genet , vol.23 , pp. 305-308
    • Rabinowicz, P.D.1    Schutz, K.2    Dedhia, N.3    Yordan, C.4    Parnell, L.D.5
  • 37
    • 0345731466 scopus 로고    scopus 로고
    • Enrichment of gene-coding sequences in maize by genome filtration
    • Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, et al. (2003) Enrichment of gene-coding sequences in maize by genome filtration. Science 302: 2118-2120 10.1126/science.1090047.
    • (2003) Science , vol.302 , pp. 2118-2120
    • Whitelaw, C.A.1    Barbazuk, W.B.2    Pertea, G.3    Chan, A.P.4    Cheung, F.5
  • 38
    • 25844507219 scopus 로고    scopus 로고
    • Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries
    • Emberton J, Ma J, Yuan Y, SanMiguel P, Bennetzen JL, (2005) Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries. Genome Res 15: 1441-1446 10.1101/gr.3362105.
    • (2005) Genome Res , vol.15 , pp. 1441-1446
    • Emberton, J.1    Ma, J.2    Yuan, Y.3    SanMiguel, P.4    Bennetzen, J.L.5
  • 40
    • 3342927934 scopus 로고    scopus 로고
    • Role of transposable elements in heterochromatin and epigenetic control
    • Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, et al. (2004) Role of transposable elements in heterochromatin and epigenetic control. Nature 430: 471-476.
    • (2004) Nature , vol.430 , pp. 471-476
    • Lippman, Z.1    Gendrel, A.V.2    Black, M.3    Vaughn, M.W.4    Dedhia, N.5
  • 41
    • 52349089796 scopus 로고    scopus 로고
    • Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in arabidopsis thaliana
    • doi:10.1371/journal.pone.0003156
    • Bernatavichute YV, Zhang X, Cokus S, Pellegrini M, Jacobsen SE, (2008) Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in arabidopsis thaliana. PLoS ONE 3: e3156 doi:10.1371/journal.pone.0003156.
    • (2008) PLoS ONE , vol.3
    • Bernatavichute, Y.V.1    Zhang, X.2    Cokus, S.3    Pellegrini, M.4    Jacobsen, S.E.5
  • 42
    • 79960716754 scopus 로고    scopus 로고
    • Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing
    • Haag JR, Pikaard CS, (2011) Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing. Nat Rev Mol Cell Biol 12: 483-492 10.1038/nrm3152; 10.1038/nrm3152.
    • (2011) Nat Rev Mol Cell Biol , vol.12 , pp. 483-492
    • Haag, J.R.1    Pikaard, C.S.2
  • 43
    • 0034353111 scopus 로고    scopus 로고
    • Mediator of Paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci
    • Dorweiler JE, Carey CC, Kubo KM, Hollick JB, Kermicle JL, et al. (2000) Mediator of Paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci. Plant Cell 12: 2101-2118.
    • (2000) Plant Cell , vol.12 , pp. 2101-2118
    • Dorweiler, J.E.1    Carey, C.C.2    Kubo, K.M.3    Hollick, J.B.4    Kermicle, J.L.5
  • 44
    • 0037197916 scopus 로고    scopus 로고
    • A mutation that prevents paramutation in maize also reverses mutator transposon methylation and silencing
    • Lisch D, Carey CC, Dorweiler JE, Chandler VL, (2002) A mutation that prevents paramutation in maize also reverses mutator transposon methylation and silencing. Proc Natl Acad Sci U S A 99: 6130-6135.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 6130-6135
    • Lisch, D.1    Carey, C.C.2    Dorweiler, J.E.3    Chandler, V.L.4
  • 45
    • 33746363573 scopus 로고    scopus 로고
    • An RNA-dependent RNA polymerase is required for paramutation in maize
    • Alleman M, Sidorenko L, McGinnis K, Seshadri V, Dorweiler JE, et al. (2006) An RNA-dependent RNA polymerase is required for paramutation in maize. Nature 442: 295-298.
    • (2006) Nature , vol.442 , pp. 295-298
    • Alleman, M.1    Sidorenko, L.2    McGinnis, K.3    Seshadri, V.4    Dorweiler, J.E.5
  • 46
    • 73649118150 scopus 로고    scopus 로고
    • Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs
    • doi:10.1371/journal.pgen.1000737
    • Jia Y, Lisch DR, Ohtsu K, Scanlon MJ, Nettleton D, et al. (2009) Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. PLoS Genet 5: e1000737 doi:10.1371/journal.pgen.1000737.
    • (2009) PLoS Genet , vol.5
    • Jia, Y.1    Lisch, D.R.2    Ohtsu, K.3    Scanlon, M.J.4    Nettleton, D.5
  • 47
    • 84862979828 scopus 로고    scopus 로고
    • Repeat associated small RNAs vary among parents and following hybridization in maize
    • Barber WT, Zhang W, Win H, Varala KK, Dorweiler JE, et al. (2012) Repeat associated small RNAs vary among parents and following hybridization in maize. Proc Natl Acad Sci U S A 109: 10444-10449 10.1073/pnas.1202073109.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 10444-10449
    • Barber, W.T.1    Zhang, W.2    Win, H.3    Varala, K.K.4    Dorweiler, J.E.5
  • 48
    • 0034872980 scopus 로고    scopus 로고
    • Maize chromomethylase zea methyltransferase2 is required for CpNpG methylation
    • Papa CM, Springer NM, Muszynski MG, Meeley R, Kaeppler SM, (2001) Maize chromomethylase zea methyltransferase2 is required for CpNpG methylation. Plant Cell 13: 1919-1928.
    • (2001) Plant Cell , vol.13 , pp. 1919-1928
    • Papa, C.M.1    Springer, N.M.2    Muszynski, M.G.3    Meeley, R.4    Kaeppler, S.M.5
  • 49
    • 35549010557 scopus 로고    scopus 로고
    • Natural variation for alleles under epigenetic control by the maize chromomethylase Zmet2
    • Makarevitch I, Stupar RM, Iniguez AL, Haun WJ, Barbazuk WB, et al. (2007) Natural variation for alleles under epigenetic control by the maize chromomethylase Zmet2. Genetics 177: 749-760.
    • (2007) Genetics , vol.177 , pp. 749-760
    • Makarevitch, I.1    Stupar, R.M.2    Iniguez, A.L.3    Haun, W.J.4    Barbazuk, W.B.5
  • 50
    • 35448940971 scopus 로고    scopus 로고
    • Global gene expression analysis of the shoot apical meristem of maize (zea mays L.)
    • Ohtsu K, Smith MB, Emrich SJ, Borsuk LA, Zhou R, et al. (2007) Global gene expression analysis of the shoot apical meristem of maize (zea mays L.). Plant J 52: 391-404 10.1111/j.1365-313X.2007.03244.x.
    • (2007) Plant J , vol.52 , pp. 391-404
    • Ohtsu, K.1    Smith, M.B.2    Emrich, S.J.3    Borsuk, L.A.4    Zhou, R.5
  • 51
    • 77958149797 scopus 로고    scopus 로고
    • Transcriptional activity of transposable elements in maize
    • Vicient CM, (2010) Transcriptional activity of transposable elements in maize. BMC Genomics 11: 601 10.1186/1471-2164-11-601.
    • (2010) BMC Genomics , vol.11 , pp. 601
    • Vicient, C.M.1
  • 52
    • 0025264862 scopus 로고
    • Somatically heritable switches in the DNA modification of mu transposable elements monitored with a suppressible mutant in maize
    • Martienssen R, Barkan A, Taylor WC, Freeling M, (1990) Somatically heritable switches in the DNA modification of mu transposable elements monitored with a suppressible mutant in maize. Genes Dev 4: 331-343.
    • (1990) Genes Dev , vol.4 , pp. 331-343
    • Martienssen, R.1    Barkan, A.2    Taylor, W.C.3    Freeling, M.4
  • 53
    • 0037226595 scopus 로고    scopus 로고
    • Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
    • Kashkush K, Feldman M, Levy AA, (2003) Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet 33: 102-106 10.1038/ng1063.
    • (2003) Nat Genet , vol.33 , pp. 102-106
    • Kashkush, K.1    Feldman, M.2    Levy, A.A.3
  • 54
    • 0029795638 scopus 로고    scopus 로고
    • Genetic and molecular analysis of the gypsy chromatin insulator of drosophila
    • Gdula DA, Gerasimova TI, Corces VG, (1996) Genetic and molecular analysis of the gypsy chromatin insulator of drosophila. Proc Natl Acad Sci U S A 93: 9378-9383.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 9378-9383
    • Gdula, D.A.1    Gerasimova, T.I.2    Corces, V.G.3
  • 55
    • 38549116060 scopus 로고    scopus 로고
    • Control of genic DNA methylation by a jmjC domain-containing protein in arabidopsis thaliana
    • Saze H, Shiraishi A, Miura A, Kakutani T, (2008) Control of genic DNA methylation by a jmjC domain-containing protein in arabidopsis thaliana. Science 319: 462-465 10.1126/science.1150987.
    • (2008) Science , vol.319 , pp. 462-465
    • Saze, H.1    Shiraishi, A.2    Miura, A.3    Kakutani, T.4
  • 57
    • 84857812604 scopus 로고    scopus 로고
    • Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications
    • Gent JI, Dong Y, Jiang J, Dawe RK, (2012) Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications. Nucleic Acids Res 40: 1550-1560 10.1093/nar/gkr862.
    • (2012) Nucleic Acids Res , vol.40 , pp. 1550-1560
    • Gent, J.I.1    Dong, Y.2    Jiang, J.3    Dawe, R.K.4
  • 58
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, et al. (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462: 315-322 10.1038/nature08514.
    • (2009) Nature , vol.462 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3    Hawkins, R.D.4    Hon, G.5
  • 59
    • 77951125407 scopus 로고    scopus 로고
    • BS seeker: Precise mapping for bisulfite sequencing
    • Chen PY, Cokus SJ, Pellegrini M, (2010) BS seeker: Precise mapping for bisulfite sequencing. BMC Bioinformatics 11: 203 10.1186/1471-2105-11-203.
    • (2010) BMC Bioinformatics , vol.11 , pp. 203
    • Chen, P.Y.1    Cokus, S.J.2    Pellegrini, M.3
  • 60
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM, (2010) BEDTools: A flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842 10.1093/bioinformatics/btq033.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 61
    • 78549273825 scopus 로고    scopus 로고
    • Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
    • Swanson-Wagner RA, Eichten SR, Kumari S, Tiffin P, Stein JC, et al. (2010) Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res 20: 1689-1699 10.1101/gr.109165.110.
    • (2010) Genome Res , vol.20 , pp. 1689-1699
    • Swanson-Wagner, R.A.1    Eichten, S.R.2    Kumari, S.3    Tiffin, P.4    Stein, J.C.5
  • 62
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, et al. (2010) Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515 10.1038/nbt.1621.
    • (2010) Nat Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5
  • 63
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent WJ, (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664 10.1101/gr.229202. Article published online before March 2002.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.