-
1
-
-
33947236065
-
Genome-wide profiling and analysis of Arabidopsis siRNAs
-
10.1371/journal.pbio.0050057, 1820830, 17298187
-
Kasschau KD, Fahlgren N, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Carrington JC. Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol 2007, 5(3):e57. 10.1371/journal.pbio.0050057, 1820830, 17298187.
-
(2007)
PLoS Biol
, vol.5
, Issue.3
-
-
Kasschau, K.D.1
Fahlgren, N.2
Chapman, E.J.3
Sullivan, C.M.4
Cumbie, J.S.5
Givan, S.A.6
Carrington, J.C.7
-
2
-
-
34147098535
-
An expression atlas of rice mRNAs and small RNAs
-
Nobuta K, Venu RC, Lu C, Belo A, Vemaraju K, Kulkarni K, Wang W, Pillay M, Green PJ, Wang G, Meyers BC. An expression atlas of rice mRNAs and small RNAs. Nat Biotech 2007, 25:473-477.
-
(2007)
Nat Biotech
, vol.25
, pp. 473-477
-
-
Nobuta, K.1
Venu, R.C.2
Lu, C.3
Belo, A.4
Vemaraju, K.5
Kulkarni, K.6
Wang, W.7
Pillay, M.8
Green, P.J.9
Wang, G.10
Meyers, B.C.11
-
3
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
10.1016/j.cell.2008.03.029, 2723732, 18423832
-
Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008, 133:523-536. 10.1016/j.cell.2008.03.029, 2723732, 18423832.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
4
-
-
66149176899
-
Genome-wide and organ-specific Landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize
-
10.1105/tpc.109.065714, 2685623, 19376930
-
Wang X, Elling AA, Li X, Li N, Peng Z, He G, Sun H, Qi X, Liu S, Deng XW. Genome-wide and organ-specific Landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell 2009, 21:1053-1069. 10.1105/tpc.109.065714, 2685623, 19376930.
-
(2009)
Plant Cell
, vol.21
, pp. 1053-1069
-
-
Wang, X.1
Elling, A.A.2
Li, X.3
Li, N.4
Peng, Z.5
He, G.6
Sun, H.7
Qi, X.8
Liu, S.9
Deng, X.W.10
-
5
-
-
65349094759
-
Computational and analytical framework for small RNA profiling by high-throughput sequencing
-
10.1261/rna.1473809, 2673065, 19307293
-
Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Givan SA, Carrington JC. Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA 2009, 15:992-1002. 10.1261/rna.1473809, 2673065, 19307293.
-
(2009)
RNA
, vol.15
, pp. 992-1002
-
-
Fahlgren, N.1
Sullivan, C.M.2
Kasschau, K.D.3
Chapman, E.J.4
Cumbie, J.S.5
Montgomery, T.A.6
Gilbert, S.D.7
Dasenko, M.8
Givan, S.A.9
Carrington, J.C.10
-
6
-
-
4644242349
-
RNA silencing in plants
-
10.1038/nature02874, 15372043
-
Baulcombe D. RNA silencing in plants. Nature 2004, 431:356-363. 10.1038/nature02874, 15372043.
-
(2004)
Nature
, vol.431
, pp. 356-363
-
-
Baulcombe, D.1
-
7
-
-
33645528966
-
Post-transcriptional small RNA pathways in plants: mechanisms and regulations
-
10.1101/gad.1410506, 16600909
-
Vaucheret H. Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes Dev 2006, 20:759-771. 10.1101/gad.1410506, 16600909.
-
(2006)
Genes Dev
, vol.20
, pp. 759-771
-
-
Vaucheret, H.1
-
8
-
-
35348996554
-
Specialization and evolution of endogenous small RNA pathways
-
10.1038/nrg2179, 17943195
-
Chapman E, Carrington JC. Specialization and evolution of endogenous small RNA pathways. Nat Rev Genet 2007, 8:884-896. 10.1038/nrg2179, 17943195.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 884-896
-
-
Chapman, E.1
Carrington, J.C.2
-
9
-
-
42549085238
-
The Epigenetic Landscape of plants
-
10.1126/science.1153996, 18436779
-
Zhang X. The Epigenetic Landscape of plants. Science 2008, 320:489-492. 10.1126/science.1153996, 18436779.
-
(2008)
Science
, vol.320
, pp. 489-492
-
-
Zhang, X.1
-
10
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2004, 2:642-652.
-
(2004)
PLoS Biol
, vol.2
, pp. 642-652
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
11
-
-
0037474126
-
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
-
10.1126/science.1079695, 12522258
-
Zilberman D, Cao X, Jacobsen SE. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 2003, 299:716-719. 10.1126/science.1079695, 12522258.
-
(2003)
Science
, vol.299
, pp. 716-719
-
-
Zilberman, D.1
Cao, X.2
Jacobsen, S.E.3
-
12
-
-
10044244768
-
SiRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis
-
10.1101/gad.1217304, 23236639
-
Liu J, He Y, Amasino R, Chen X. siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis. Genes & Dev 2004, 18:2873-2878. 10.1101/gad.1217304, 23236639.
-
(2004)
Genes & Dev
, vol.18
, pp. 2873-2878
-
-
Liu, J.1
He, Y.2
Amasino, R.3
Chen, X.4
-
13
-
-
46149088681
-
Plant ARGONAUTES
-
10.1016/j.tplants.2008.04.007, 18508405
-
Vaucheret H. Plant ARGONAUTES. Trends Plant Sci 2008, 13:350-358. 10.1016/j.tplants.2008.04.007, 18508405.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 350-358
-
-
Vaucheret, H.1
-
14
-
-
17444430392
-
MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
10.1016/j.cell.2005.04.004, 15851028
-
Allen E, Xie Z, Gustafson AM, Carrington JC. MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005, 121:207-221. 10.1016/j.cell.2005.04.004, 15851028.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
15
-
-
24644481318
-
DICER-LIKE4 functions in transacting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana
-
10.1073/pnas.0506426102, 1200315, 16129836
-
Xie Z, Allen E, Wilken A, Carrington JC. DICER-LIKE4 functions in transacting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. PNAS 2005, 102:12984-12989. 10.1073/pnas.0506426102, 1200315, 16129836.
-
(2005)
PNAS
, vol.102
, pp. 12984-12989
-
-
Xie, Z.1
Allen, E.2
Wilken, A.3
Carrington, J.C.4
-
16
-
-
24944491201
-
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis
-
10.1101/gad.1352605, 23236639
-
Yoshikawa M, Peragine A, Park MY, Poethig S. A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes & Development 2005, 19:2164-2175. 10.1101/gad.1352605, 23236639.
-
(2005)
Genes & Development
, vol.19
, pp. 2164-2175
-
-
Yoshikawa, M.1
Peragine, A.2
Park, M.Y.3
Poethig, S.4
-
17
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
-
10.1016/j.cell.2005.11.035, 3137516, 16377568
-
Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 2005, 123:1279-1291. 10.1016/j.cell.2005.11.035, 3137516, 16377568.
-
(2005)
Cell
, vol.123
, pp. 1279-1291
-
-
Borsani, O.1
Zhu, J.2
Verslues, P.E.3
Sunkar, R.4
Zhu, J.K.5
-
18
-
-
33845202133
-
A pathogen-inducible endogenous siRNA in plant immunity
-
10.1073/pnas.0608258103, 1693862, 17071740
-
Katiyar-Agarwal S, Morgan R, Dahlbeck D, Borsani O, Villegas A, Zhu JK, Staskawicz BJ. A pathogen-inducible endogenous siRNA in plant immunity. PNAS 2006, 103:18002-18007. 10.1073/pnas.0608258103, 1693862, 17071740.
-
(2006)
PNAS
, vol.103
, pp. 18002-18007
-
-
Katiyar-Agarwal, S.1
Morgan, R.2
Dahlbeck, D.3
Borsani, O.4
Villegas, A.5
Zhu, J.K.6
Staskawicz, B.J.7
-
19
-
-
77956989755
-
22-nucleotide RNAs trigger secondary siRNA biogenesis in plants
-
10.1073/pnas.1001738107, 2930544, 20643946
-
Chen HM, Chen LT, Patel K, Li YH, Baulcombe C, Wu SH. 22-nucleotide RNAs trigger secondary siRNA biogenesis in plants. PNAS 2010, 107:15269-15274. 10.1073/pnas.1001738107, 2930544, 20643946.
-
(2010)
PNAS
, vol.107
, pp. 15269-15274
-
-
Chen, H.M.1
Chen, L.T.2
Patel, K.3
Li, Y.H.4
Baulcombe, C.5
Wu, S.H.6
-
20
-
-
33644850032
-
Nomenclature and functions of RNA-directed RNA polymerases
-
10.1016/j.tplants.2006.01.003, 16473542
-
Wassenegger M, Krezal G. Nomenclature and functions of RNA-directed RNA polymerases. Trends Plant Sci 2006, 11:142-151. 10.1016/j.tplants.2006.01.003, 16473542.
-
(2006)
Trends Plant Sci
, vol.11
, pp. 142-151
-
-
Wassenegger, M.1
Krezal, G.2
-
21
-
-
67649921029
-
Dicer-like (DCL) proteins in plants
-
10.1007/s10142-009-0111-5, 19221817
-
Liu Q, Feng Y, Zhu Z. Dicer-like (DCL) proteins in plants. Funct Integr Genomics 2009, 9:277-286. 10.1007/s10142-009-0111-5, 19221817.
-
(2009)
Funct Integr Genomics
, vol.9
, pp. 277-286
-
-
Liu, Q.1
Feng, Y.2
Zhu, Z.3
-
22
-
-
73249125240
-
Rice microRNA effector complexes and targets
-
10.1105/tpc.109.070938, 2798332, 19903869
-
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y. Rice microRNA effector complexes and targets. Plant Cell 2009, 21:3421-3435. 10.1105/tpc.109.070938, 2798332, 19903869.
-
(2009)
Plant Cell
, vol.21
, pp. 3421-3435
-
-
Wu, L.1
Zhang, Q.2
Zhou, H.3
Ni, F.4
Wu, X.5
Qi, Y.6
-
24
-
-
72049114156
-
Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in glycine max seed coats
-
10.1105/tpc.109.069856, 2782299, 19820189
-
Tuteja JH, Zabala G, Varala K, Hudson M, Vodkin LO. Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in glycine max seed coats. Plant Cell 2009, 21:3063-3077. 10.1105/tpc.109.069856, 2782299, 19820189.
-
(2009)
Plant Cell
, vol.21
, pp. 3063-3077
-
-
Tuteja, J.H.1
Zabala, G.2
Varala, K.3
Hudson, M.4
Vodkin, L.O.5
-
25
-
-
54449085115
-
Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant
-
10.1073/pnas.0808066105, 2567475, 18815367
-
Nobuta K, Lu C, Shrivastava R, Pillay M, De Paoli E, Accerbi M, Arteaga M, Sidorenko L, Jeon DH, Yen Y, Green PJ, Chandler VL, Meyers BC. Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant. PNAS 2008, 105:14958-14963. 10.1073/pnas.0808066105, 2567475, 18815367.
-
(2008)
PNAS
, vol.105
, pp. 14958-14963
-
-
Nobuta, K.1
Lu, C.2
Shrivastava, R.3
Pillay, M.4
De Paoli, E.5
Accerbi, M.6
Arteaga, M.7
Sidorenko, L.8
Jeon, D.H.9
Yen, Y.10
Green, P.J.11
Chandler, V.L.12
Meyers, B.C.13
-
26
-
-
24644490196
-
Elucidation of the small RNA component of the transcriptome
-
10.1126/science.1114112, 16141074
-
Lu C, Tej SS, Luo S, Handenschild CD, Meyers BC, Green PJ. Elucidation of the small RNA component of the transcriptome. Science 2005, 309:1567-1569. 10.1126/science.1114112, 16141074.
-
(2005)
Science
, vol.309
, pp. 1567-1569
-
-
Lu, C.1
Tej, S.S.2
Luo, S.3
Handenschild, C.D.4
Meyers, B.C.5
Green, P.J.6
-
27
-
-
70450202132
-
The B73 Maize Genome: Complexity, Diversity, and Dynamics
-
10.1126/science.1178534, 19965430
-
Schnable PS, et al. The B73 Maize Genome: Complexity, Diversity, and Dynamics. Science 2009, 326:1112-1115. 10.1126/science.1178534, 19965430.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
-
28
-
-
42549136362
-
Novel and nodulation-regulated microRNAs in soybean roots
-
10.1186/1471-2164-9-160, 2335117, 18402695
-
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O. Novel and nodulation-regulated microRNAs in soybean roots. BMC Genomics 2008, 9:160. 10.1186/1471-2164-9-160, 2335117, 18402695.
-
(2008)
BMC Genomics
, vol.9
, pp. 160
-
-
Subramanian, S.1
Fu, Y.2
Sunkar, R.3
Barbazuk, W.B.4
Zhu, J.K.5
Yu, O.6
-
29
-
-
57849145093
-
Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
-
10.1016/j.bbrc.2008.11.140, 19084500
-
Wang Y, Li P, Cao X, Wang X, Zhang A, Li X. Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules. Biochem Biophys Res Commun 2009, 378:799-803. 10.1016/j.bbrc.2008.11.140, 19084500.
-
(2009)
Biochem Biophys Res Commun
, vol.378
, pp. 799-803
-
-
Wang, Y.1
Li, P.2
Cao, X.3
Wang, X.4
Zhang, A.5
Li, X.6
-
30
-
-
75149175703
-
Prediction of novel miRNAs and associated target genes in Glycine max
-
3024872, 21172049
-
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G. Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinformatics 2010, 11(S1):S14. 3024872, 21172049.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.S1
-
-
Joshi, T.1
Yan, Z.2
Libault, M.3
Jeong, D.H.4
Park, S.5
Green, P.J.6
Sherrier, D.J.7
Farmer, A.8
May, G.9
Meyers, B.C.10
Xu, D.11
Stacey, G.12
-
31
-
-
78650971549
-
Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
-
10.1186/1471-2229-11-5, 3023735, 21219599
-
Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS. Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol 2011, 11:5. 10.1186/1471-2229-11-5, 3023735, 21219599.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 5
-
-
Song, Q.X.1
Liu, Y.F.2
Hu, X.Y.3
Zhang, W.K.4
Ma, B.5
Chen, S.Y.6
Zhang, J.S.7
-
32
-
-
33750953227
-
Whole-genome re-sequencing
-
10.1016/j.gde.2006.10.009, 20726514
-
Bentley DR. Whole-genome re-sequencing. Current Op Genet & Development 2006, 16:545-552. 10.1016/j.gde.2006.10.009, 20726514.
-
(2006)
Current Op Genet & Development
, vol.16
, pp. 545-552
-
-
Bentley, D.R.1
-
33
-
-
84871738829
-
Phytozome database
-
Phytozome database. [http://www.phytozome.net/soybean].
-
-
-
-
34
-
-
84871813139
-
Novoalign
-
Novoalign. [http://www.novocraft.com].
-
-
-
-
35
-
-
84871770801
-
MiRBase
-
miRBase. [http://www.mirbase.org/].
-
-
-
-
36
-
-
84871732136
-
NCBI nucleotide (nt)
-
NCBI nucleotide (nt). [http://www.ncbi.nlm.nih.gov/blast/Blast.cgi].
-
-
-
-
37
-
-
79958123270
-
Identification of novel soybean microRNAs involved in abiotic and biotic stresses
-
10.1186/1471-2164-12-307, 3141666, 21663675
-
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R. Identification of novel soybean microRNAs involved in abiotic and biotic stresses. BMC Genomics 2011, 12:307. 10.1186/1471-2164-12-307, 3141666, 21663675.
-
(2011)
BMC Genomics
, vol.12
, pp. 307
-
-
Kulcheski, F.R.1
de Oliveira, L.F.2
Molina, L.G.3
Almerao, M.P.4
Rodrigues, F.A.5
Marcolino, J.6
Barbosa, J.F.7
Stolf-Moreira, R.8
Nepomuceno, A.L.9
Marcelino-Guimaraes, F.C.10
Abdelnoor, R.V.11
Nascimento, L.C.12
Carazzolle, M.F.13
Pereira, G.A.14
Margis, R.15
-
38
-
-
68749109488
-
Plant phase transitions make a Splash
-
10.1016/j.cell.2009.08.011, 19703391
-
Fornara F, Coupland G. Plant phase transitions make a Splash. Cell 2009, 138:625-627. 10.1016/j.cell.2009.08.011, 19703391.
-
(2009)
Cell
, vol.138
, pp. 625-627
-
-
Fornara, F.1
Coupland, G.2
-
39
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
40
-
-
84871737794
-
MultAlin
-
MultAlin. [http://bioinfo.genotoul.fr/multalin/multalin.html].
-
-
-
-
41
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
10.1038/nature08670, 20075913
-
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, et al. Genome sequence of the palaeopolyploid soybean. Nature 2010, 463:178-183. 10.1038/nature08670, 20075913.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.4
Mitros, T.5
-
43
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
10.1101/gad.1476406, 1698448, 17182867
-
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes and Development 2006, 20:3407-3425. 10.1101/gad.1476406, 1698448, 17182867.
-
(2006)
Genes and Development
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
44
-
-
33646723046
-
Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis
-
Levesque MP, Vernoux T, Busch W, Cui H, Wang JY, Ikram Blilou I, Hassan H, Nakajima K, Matsumoto N, Lohmann JU, Scheres B, Benfey PN. Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. PLoS Biol 2006, 4:0739-0752.
-
(2006)
PLoS Biol
, vol.4
, pp. 739-752
-
-
Levesque, M.P.1
Vernoux, T.2
Busch, W.3
Cui, H.4
Wang, J.Y.5
Ikram Blilou, I.6
Hassan, H.7
Nakajima, K.8
Matsumoto, N.9
Lohmann, J.U.10
Scheres, B.11
Benfey, P.N.12
-
45
-
-
78650516640
-
Multiple distinct small RNAs originate from the same microRNA precursors
-
10.1186/gb-2010-11-8-r81, 2945783, 20696037
-
Zhang W, Gao S, Zhou X, Xia J, Chellappan P, Zhou X, Zhang X, Jin H. Multiple distinct small RNAs originate from the same microRNA precursors. Genome Biol 2010, 11:R81. 10.1186/gb-2010-11-8-r81, 2945783, 20696037.
-
(2010)
Genome Biol
, vol.11
-
-
Zhang, W.1
Gao, S.2
Zhou, X.3
Xia, J.4
Chellappan, P.5
Zhou, X.6
Zhang, X.7
Jin, H.8
-
46
-
-
80455129664
-
Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies
-
Tripp HJ, Hewson I, Boyarsky S, Stuart JM, Zehr JP. Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies. NAR 2011,
-
(2011)
NAR
-
-
Tripp, H.J.1
Hewson, I.2
Boyarsky, S.3
Stuart, J.M.4
Zehr, J.P.5
-
47
-
-
67650461957
-
Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis
-
10.1038/nature08084, 19494814
-
Mosher RA, Melnyk CW, Kelly KA, Dunn RM, Studholme DJ, Baulcombe DC. Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature 2009, 460:283-286. 10.1038/nature08084, 19494814.
-
(2009)
Nature
, vol.460
, pp. 283-286
-
-
Mosher, R.A.1
Melnyk, C.W.2
Kelly, K.A.3
Dunn, R.M.4
Studholme, D.J.5
Baulcombe, D.C.6
-
48
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring M, Bubb KL, Henikoff S. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Sciences 2009, 324:1447-1451.
-
(2009)
Sciences
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
50
-
-
77953193344
-
MiR390 Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
-
10.1105/tpc.109.072553, 2879756, 20363771
-
Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD, Maizel A. miR390 Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell 2010, 22:1104-1117. 10.1105/tpc.109.072553, 2879756, 20363771.
-
(2010)
Plant Cell
, vol.22
, pp. 1104-1117
-
-
Marin, E.1
Jouannet, V.2
Herz, A.3
Lokerse, A.S.4
Weijers, D.5
Vaucheret, H.6
Nussaume, L.7
Crespi, M.D.8
Maizel, A.9
-
51
-
-
41149158475
-
Specificity of ARGONAUTE7-miR390 interactionand dual functionality in TAS3 trans-acting siRNA formation
-
10.1016/j.cell.2008.02.033, 18342362
-
Montgomery TA, Howell MD, Cuperus JT, Li D, Hansen JE, Alexander AL, Chapman EJ, Fahlgren N, Allen E, Carrington JC. Specificity of ARGONAUTE7-miR390 interactionand dual functionality in TAS3 trans-acting siRNA formation. Cell 2008, 133:128-141. 10.1016/j.cell.2008.02.033, 18342362.
-
(2008)
Cell
, vol.133
, pp. 128-141
-
-
Montgomery, T.A.1
Howell, M.D.2
Cuperus, J.T.3
Li, D.4
Hansen, J.E.5
Alexander, A.L.6
Chapman, E.J.7
Fahlgren, N.8
Allen, E.9
Carrington, J.C.10
-
52
-
-
0002294574
-
A simple method for extraction of RNA from maize tissue
-
McCarty D. A simple method for extraction of RNA from maize tissue. Maize Genet Coop Newsl 1986, 60:61.
-
(1986)
Maize Genet Coop Newsl
, vol.60
, pp. 61
-
-
McCarty, D.1
-
53
-
-
0028448485
-
Chalcone synthase mRNA and activity are reduced in the yellow soybean seed coats with dominant I alleles
-
10.1104/pp.105.2.739, 159416, 8066134
-
Wang C, Todd J, Vodkin LO. Chalcone synthase mRNA and activity are reduced in the yellow soybean seed coats with dominant I alleles. Plant Physiol 1994, 105:739-748. 10.1104/pp.105.2.739, 159416, 8066134.
-
(1994)
Plant Physiol
, vol.105
, pp. 739-748
-
-
Wang, C.1
Todd, J.2
Vodkin, L.O.3
-
54
-
-
0001638213
-
Duplications that suppress and deletions that restore expression from a chalcone synthase multigene family
-
161129, 12239396
-
Todd JJ, Vodkin LO. Duplications that suppress and deletions that restore expression from a chalcone synthase multigene family. Plant Cell 1996, 8:687-699. 161129, 12239396.
-
(1996)
Plant Cell
, vol.8
, pp. 687-699
-
-
Todd, J.J.1
Vodkin, L.O.2
-
55
-
-
26944444678
-
Expression profiling soybean response to Pseudomonas syringae reveals new defense-related genes and rapid HR-specific down regulation of photosynthesis
-
Zou J, Rodriguez-Zas S, Aldea M, Li M, Zhu J, Gonzalez D, Vodkin LO, DeLucia E, Clough SJ. Expression profiling soybean response to Pseudomonas syringae reveals new defense-related genes and rapid HR-specific down regulation of photosynthesis. Mo Plant Microbe Interact 2005, 18:1161-1174.
-
(2005)
Mo Plant Microbe Interact
, vol.18
, pp. 1161-1174
-
-
Zou, J.1
Rodriguez-Zas, S.2
Aldea, M.3
Li, M.4
Zhu, J.5
Gonzalez, D.6
Vodkin, L.O.7
DeLucia, E.8
Clough, S.J.9
-
56
-
-
0033615491
-
A species of small antisense RNA in posttranscriptional gene silencing in plants
-
10.1126/science.286.5441.950, 10542148
-
Hamilton AJ, Baulcombe DC. A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 1999, 286:950-952. 10.1126/science.286.5441.950, 10542148.
-
(1999)
Science
, vol.286
, pp. 950-952
-
-
Hamilton, A.J.1
Baulcombe, D.C.2
-
57
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
10.1093/nar/16.22.10881, 338945, 2849754
-
Corpet F. Multiple sequence alignment with hierarchical clustering. Nucl Acids Res 1988, 16(22):10881-10890. 10.1093/nar/16.22.10881, 338945, 2849754.
-
(1988)
Nucl Acids Res
, vol.16
, Issue.22
, pp. 10881-10890
-
-
Corpet, F.1
-
58
-
-
84871820601
-
Gene Expression Omnibus, a genomics repository database
-
Gene Expression Omnibus, a genomics repository database. [http://www.ncbi.nlm.nih.gov/geo/].
-
-
-
-
59
-
-
84871807747
-
PLACE, a database of plant cis-acting regulatory DNA elements
-
PLACE, a database of plant cis-acting regulatory DNA elements. [http://www.dna.affrc.go.jp/PLACE/signalscan.html].
-
-
-
|