메뉴 건너뛰기




Volumn 8, Issue 6, 2013, Pages

Genome-Wide Identification, Phylogenetic and Co-Expression Analysis of OsSET Gene Family in Rice

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN SET; REGULATOR PROTEIN; UNCLASSIFIED DRUG; HISTONE; VEGETABLE PROTEIN;

EID: 84878757477     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0065426     Document Type: Article
Times cited : (31)

References (100)
  • 1
    • 0035503921 scopus 로고    scopus 로고
    • The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes
    • Baumbusch LO, Thorstensen T, Krauss V, Fischer A, Naumann K, et al. (2001) The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes. Nucleic Acids Res 29: 4319-4333.
    • (2001) Nucleic Acids Res , vol.29 , pp. 4319-4333
    • Baumbusch, L.O.1    Thorstensen, T.2    Krauss, V.3    Fischer, A.4    Naumann, K.5
  • 3
    • 0031984480 scopus 로고    scopus 로고
    • SET domain proteins modulate chromatin domains in eu- and heterochromatin
    • Jenuwein T, Laible G, Dorn R, Reuter G, (1998) SET domain proteins modulate chromatin domains in eu- and heterochromatin. Cell Mol Life Sci 54: 80-93.
    • (1998) Cell Mol Life Sci , vol.54 , pp. 80-93
    • Jenuwein, T.1    Laible, G.2    Dorn, R.3    Reuter, G.4
  • 4
    • 0037309997 scopus 로고    scopus 로고
    • Structure of SET domain proteins: a new twist on histone methylation
    • Marmorstein R, (2003) Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem Sci 28: 59-62.
    • (2003) Trends Biochem Sci , vol.28 , pp. 59-62
    • Marmorstein, R.1
  • 6
    • 65249190231 scopus 로고    scopus 로고
    • An update on histone lysine methylation in plants
    • Yu Y, Bu ZY, Shen WH, Dong AW, (2009) An update on histone lysine methylation in plants. Prog Nat Sci 19: 407-413.
    • (2009) Prog Nat Sci , vol.19 , pp. 407-413
    • Yu, Y.1    Bu, Z.Y.2    Shen, W.H.3    Dong, A.W.4
  • 7
    • 0038419637 scopus 로고    scopus 로고
    • Mechanism of multiple lysine methylation by the SET domain enzyme Rubisco LSMT
    • Trievel RC, Flynn EM, Houtz RL, Hurley JH, (2003) Mechanism of multiple lysine methylation by the SET domain enzyme Rubisco LSMT. Nat Struct Biol 10: 545-552.
    • (2003) Nat Struct Biol , vol.10 , pp. 545-552
    • Trievel, R.C.1    Flynn, E.M.2    Houtz, R.L.3    Hurley, J.H.4
  • 8
    • 41149125431 scopus 로고    scopus 로고
    • How do SET-domain protein lysine methyltransferases achieve the methylation state specificity? Revisited by ab initio QM/MM molecular dynamics simulations
    • Hu P, Wang S, Zhang Y, (2008) How do SET-domain protein lysine methyltransferases achieve the methylation state specificity? Revisited by ab initio QM/MM molecular dynamics simulations. J Am Chem Soc 130: 3806-3813.
    • (2008) J Am Chem Soc , vol.130 , pp. 3806-3813
    • Hu, P.1    Wang, S.2    Zhang, Y.3
  • 9
    • 0038459131 scopus 로고    scopus 로고
    • Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots
    • Springer NM, Napoli CA, Selinger DA, Pandey R, Cone KC, et al. (2003) Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. Plant Physiol 132: 907-925.
    • (2003) Plant Physiol , vol.132 , pp. 907-925
    • Springer, N.M.1    Napoli, C.A.2    Selinger, D.A.3    Pandey, R.4    Cone, K.C.5
  • 12
    • 0030998525 scopus 로고    scopus 로고
    • A Polycomb-group gene regulates homeotic gene expression in Arabidopsis
    • Goodrich J, Puangsomlee P, Martin M, Long D, Meyerowitz EM, et al. (1997) A Polycomb-group gene regulates homeotic gene expression in Arabidopsis. Nature 386: 44-51.
    • (1997) Nature , vol.386 , pp. 44-51
    • Goodrich, J.1    Puangsomlee, P.2    Martin, M.3    Long, D.4    Meyerowitz, E.M.5
  • 13
    • 0032189967 scopus 로고    scopus 로고
    • The CURLY LEAF gene controls both division and elongation of cells during the expansion of the leaf blade in Arabidopsis thaliana
    • Kim GT, Tsukaya H, Uchimiya H, (1998) The CURLY LEAF gene controls both division and elongation of cells during the expansion of the leaf blade in Arabidopsis thaliana. Planta 206: 175-183.
    • (1998) Planta , vol.206 , pp. 175-183
    • Kim, G.T.1    Tsukaya, H.2    Uchimiya, H.3
  • 14
    • 77956650950 scopus 로고    scopus 로고
    • Regulation of cell identity by plant Polycomb and trithorax group proteins
    • Köhler C, Hennig L, (2010) Regulation of cell identity by plant Polycomb and trithorax group proteins. Curr Opin Genet Dev 20: 541-547.
    • (2010) Curr Opin Genet Dev , vol.20 , pp. 541-547
    • Köhler, C.1    Hennig, L.2
  • 15
    • 33749352265 scopus 로고    scopus 로고
    • Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27
    • Schubert D, Primavesi L, Bishopp A, Roberts G, Doonan J, et al. (2006) Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27. The EMBO journal 25: 4638-4649.
    • (2006) The EMBO Journal , vol.25 , pp. 4638-4649
    • Schubert, D.1    Primavesi, L.2    Bishopp, A.3    Roberts, G.4    Doonan, J.5
  • 16
    • 58149237898 scopus 로고    scopus 로고
    • Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb repressive complex 2 components
    • Jiang D, Wang Y, He Y, (2008) Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb repressive complex 2 components. PLoS One 3: e3404.
    • (2008) PLoS One , vol.3
    • Jiang, D.1    Wang, Y.2    He, Y.3
  • 17
    • 77956793440 scopus 로고    scopus 로고
    • The CURLY LEAF Interacting Protein BLISTER Controls Expression of Polycomb-Group Target Genes and Cellular Differentiation of Arabidopsis thaliana
    • Schatlowski N, Stahl Y, Hohenstatt ML, Goodrich J, Schubert D, (2010) The CURLY LEAF Interacting Protein BLISTER Controls Expression of Polycomb-Group Target Genes and Cellular Differentiation of Arabidopsis thaliana. Plant Cell 22: 2291-2305.
    • (2010) Plant Cell , vol.22 , pp. 2291-2305
    • Schatlowski, N.1    Stahl, Y.2    Hohenstatt, M.L.3    Goodrich, J.4    Schubert, D.5
  • 18
    • 57649188040 scopus 로고    scopus 로고
    • Polycomb Silencing of KNOX Genes Confines Shoot Stem Cell Niches in Arabidopsis
    • Xu L, Shen WH, (2008) Polycomb Silencing of KNOX Genes Confines Shoot Stem Cell Niches in Arabidopsis. Curr Biol 18: 1966-1971.
    • (2008) Curr Biol , vol.18 , pp. 1966-1971
    • Xu, L.1    Shen, W.H.2
  • 19
    • 0032540508 scopus 로고    scopus 로고
    • Maternal Control of Embryogenesis by MEDEA, a Polycomb Group Gene in Arabidopsis
    • Grossniklaus U, Jean-Philippe Vielle-Calzada, Marilu A. Hoeppner WBG (1998) Maternal Control of Embryogenesis by MEDEA, a Polycomb Group Gene in Arabidopsis. Science: 446-450.
    • (1998) Science , pp. 446-450
    • Grossniklaus, U.1    Jean-Philippe, V.-C.2    Marilu, A.3    Hoeppner, W.B.G.4
  • 20
    • 33745127746 scopus 로고    scopus 로고
    • Dynamic regulatory interactions of Polycomb group genes: MEDEA autoregulation is required for imprinted gene expression in Arabidopsis
    • Baroux U, Gagliardini V, Page DR, Grossniklaus U, (2006) Dynamic regulatory interactions of Polycomb group genes: MEDEA autoregulation is required for imprinted gene expression in Arabidopsis. Genes Dev 20: 1081-1086.
    • (2006) Genes Dev , vol.20 , pp. 1081-1086
    • Baroux, U.1    Gagliardini, V.2    Page, D.R.3    Grossniklaus, U.4
  • 22
    • 11244289666 scopus 로고    scopus 로고
    • The Arabidopsis thaliana MEDEA Polycomb group protein controls expression of PHERES1 by parental imprinting
    • Köhler C, Page DR, Gagliardini V, Grossniklaus U, (2005) The Arabidopsis thaliana MEDEA Polycomb group protein controls expression of PHERES1 by parental imprinting. Nat Genet 37: 28-30.
    • (2005) Nat Genet , vol.37 , pp. 28-30
    • Köhler, C.1    Page, D.R.2    Gagliardini, V.3    Grossniklaus, U.4
  • 23
    • 70349696284 scopus 로고    scopus 로고
    • Imprinting of the Polycomb Group Gene MEDEA Serves as a Ploidy Sensor in Arabidopsis
    • Erilova A, Brownfield L, Exner V, Rosa M, Twell D, et al. (2009) Imprinting of the Polycomb Group Gene MEDEA Serves as a Ploidy Sensor in Arabidopsis. PLoS Genet 5: 14.
    • (2009) PLoS Genet , vol.5 , pp. 14
    • Erilova, A.1    Brownfield, L.2    Exner, V.3    Rosa, M.4    Twell, D.5
  • 24
    • 84860521732 scopus 로고    scopus 로고
    • Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis
    • Pontvianne F, Blevins T, Chandrasekhara C, Feng W, Stroud H, et al. (2012) Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis. Genes Dev 26: 945-957.
    • (2012) Genes Dev , vol.26 , pp. 945-957
    • Pontvianne, F.1    Blevins, T.2    Chandrasekhara, C.3    Feng, W.4    Stroud, H.5
  • 25
    • 11144354402 scopus 로고    scopus 로고
    • Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana
    • Jackson JP, Johnson L, Jasencakova Z, Zhang X, PerezBurgos L, et al. (2004) Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma 112: 308-315.
    • (2004) Chromosoma , vol.112 , pp. 308-315
    • Jackson, J.P.1    Johnson, L.2    Jasencakova, Z.3    Zhang, X.4    PerezBurgos, L.5
  • 26
    • 27944500697 scopus 로고    scopus 로고
    • H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases
    • Ebbs ML, Bartee L, Bender J, (2005) H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases. Molecular and Cellular Biology 25: 10507-10515.
    • (2005) Molecular and Cellular Biology , vol.25 , pp. 10507-10515
    • Ebbs, M.L.1    Bartee, L.2    Bender, J.3
  • 27
    • 33745454548 scopus 로고    scopus 로고
    • Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
    • Ebbs ML, Bender J, (2006) Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 18: 1166-1176.
    • (2006) Plant Cell , vol.18 , pp. 1166-1176
    • Ebbs, M.L.1    Bender, J.2
  • 28
    • 0344088338 scopus 로고    scopus 로고
    • ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes
    • Alvarez-Venegas R, Pien S, Sadder M, Witmer X, Grossniklaus U, et al. (2003) ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes. Curr Biol 13: 627-637.
    • (2003) Curr Biol , vol.13 , pp. 627-637
    • Alvarez-Venegas, R.1    Pien, S.2    Sadder, M.3    Witmer, X.4    Grossniklaus, U.5
  • 29
    • 35548995418 scopus 로고    scopus 로고
    • The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus
    • Saleh A, Al-Abdallat A, Ndamukong I, Alvarez-Venegas R, Avramova Z, (2007) The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish 'bivalent chromatin marks' at the silent AGAMOUS locus. Nucleic Acids Res 35: 6290-6296.
    • (2007) Nucleic Acids Res , vol.35 , pp. 6290-6296
    • Saleh, A.1    Al-Abdallat, A.2    Ndamukong, I.3    Alvarez-Venegas, R.4    Avramova, Z.5
  • 30
    • 48249155078 scopus 로고    scopus 로고
    • The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions
    • Saleh A, Alvarez-Venegas R, Yilmaz M, Oahn L, Hou G, et al. (2008) The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions. Plant Cell 20: 568-579.
    • (2008) Plant Cell , vol.20 , pp. 568-579
    • Saleh, A.1    Alvarez-Venegas, R.2    Yilmaz, M.3    Oahn, L.4    Hou, G.5
  • 31
    • 0041703425 scopus 로고    scopus 로고
    • OsSET1, a novel SET-domain-containing gene from rice
    • Liang YK, Wang Y, Zhang Y, Li SG, Lu XC, et al. (2003) OsSET1, a novel SET-domain-containing gene from rice. J Exp Bot 54: 1995-1996.
    • (2003) J Exp Bot , vol.54 , pp. 1995-1996
    • Liang, Y.K.1    Wang, Y.2    Zhang, Y.3    Li, S.G.4    Lu, X.C.5
  • 32
    • 68449086151 scopus 로고    scopus 로고
    • Expression, imprinting, and evolution of rice homologs of the polycomb group genes
    • Luo M, Platten D, Chaudhury A, Peacock WJ, Dennis ES, (2009) Expression, imprinting, and evolution of rice homologs of the polycomb group genes. Molecular Plant 2: 711-723.
    • (2009) Molecular Plant , vol.2 , pp. 711-723
    • Luo, M.1    Platten, D.2    Chaudhury, A.3    Peacock, W.J.4    Dennis, E.S.5
  • 33
    • 0141648396 scopus 로고    scopus 로고
    • A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development
    • Thakur JK, Malik MR, Bhatt V, Reddy MK, Sopory SK, et al. (2003) A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development. Gene 314: 1-13.
    • (2003) Gene , vol.314 , pp. 1-13
    • Thakur, J.K.1    Malik, M.R.2    Bhatt, V.3    Reddy, M.K.4    Sopory, S.K.5
  • 34
    • 77955143767 scopus 로고    scopus 로고
    • Rice SUVH Histone Methyltransferase Genes Display Specific Functions in Chromatin Modification and Retrotransposon Repression
    • Qin F-J, Sun Q-W, Huang L-M, Chen X-S, Zhou D-X, (2010) Rice SUVH Histone Methyltransferase Genes Display Specific Functions in Chromatin Modification and Retrotransposon Repression. Mol Plant 3: 1674-2052.
    • (2010) Mol Plant , vol.3 , pp. 1674-2052
    • Qin, F.-J.1    Sun, Q.-W.2    Huang, L.-M.3    Chen, X.-S.4    Zhou, D.-X.5
  • 35
    • 34247630796 scopus 로고    scopus 로고
    • SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice
    • Ding Y, Wang X, Su L, Zhai JX, Cao SY, et al. (2007) SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell 19: 9-22.
    • (2007) Plant Cell , vol.19 , pp. 9-22
    • Ding, Y.1    Wang, X.2    Su, L.3    Zhai, J.X.4    Cao, S.Y.5
  • 36
    • 84867012844 scopus 로고    scopus 로고
    • The Histone Methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice
    • Sun C, Fang J, Zhao T, Xu B, Zhang F, et al. (2012) The Histone Methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice. Plant Cell 24: 3235-3247.
    • (2012) Plant Cell , vol.24 , pp. 3235-3247
    • Sun, C.1    Fang, J.2    Zhao, T.3    Xu, B.4    Zhang, F.5
  • 37
    • 2942620598 scopus 로고    scopus 로고
    • The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    • Cannon SB, Mitra A, Baumgarten A, Young ND, May G, (2004) The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC plant biology 4: 10.
    • (2004) BMC Plant Biology , vol.4 , pp. 10
    • Cannon, S.B.1    Mitra, A.2    Baumgarten, A.3    Young, N.D.4    May, G.5
  • 38
    • 34248549429 scopus 로고    scopus 로고
    • Structure of the SANT domain from the Xenopus chromatin remodeling factor ISWI
    • Horton JR, Elgar SJ, Khan SI, Zhang X, Wade PA, et al. (2007) Structure of the SANT domain from the Xenopus chromatin remodeling factor ISWI. Proteins 67: 1198-1202.
    • (2007) Proteins , vol.67 , pp. 1198-1202
    • Horton, J.R.1    Elgar, S.J.2    Khan, S.I.3    Zhang, X.4    Wade, P.A.5
  • 40
    • 84865813162 scopus 로고    scopus 로고
    • The Arabidopsis thaliana SET-domain-containing protein ASHH1/SDG26 interacts with itself and with distinct histone lysine methyltransferases
    • Valencia-Morales Mdel P, Camas-Reyes JA, Cabrera-Ponce JL, Alvarez-Venegas R, (2012) The Arabidopsis thaliana SET-domain-containing protein ASHH1/SDG26 interacts with itself and with distinct histone lysine methyltransferases. J Plant Res 125: 679-692.
    • (2012) J Plant Res , vol.125 , pp. 679-692
    • Valencia-Morales Mdel, P.1    Camas-Reyes, J.A.2    Cabrera-Ponce, J.L.3    Alvarez-Venegas, R.4
  • 41
    • 70649099295 scopus 로고    scopus 로고
    • The ASH1 HOMOLOG 2 (ASHH2) Histone H3 Methyltransferase Is Required for Ovule and Anther Development in Arabidopsis
    • Grini PE, Thorstensen T, Alm V, Vizcay-Barrena G, Windju SS, et al. (2009) The ASH1 HOMOLOG 2 (ASHH2) Histone H3 Methyltransferase Is Required for Ovule and Anther Development in Arabidopsis. PLoS One 4.
    • (2009) PLoS One 4
    • Grini, P.E.1    Thorstensen, T.2    Alm, V.3    Vizcay-Barrena, G.4    Windju, S.S.5
  • 42
    • 37449012064 scopus 로고    scopus 로고
    • The Arabidopsis SET-domain protein ASHR3 is involved in stamen development and interacts with the bHLH transcription factor ABORTED MICROSPORES (AMS)
    • Thorstensen T, Grini PE, Mercy IS, Alm V, Erdal S, et al. (2008) The Arabidopsis SET-domain protein ASHR3 is involved in stamen development and interacts with the bHLH transcription factor ABORTED MICROSPORES (AMS). Plant Mol Biol 66: 47-59.
    • (2008) Plant Mol Biol , vol.66 , pp. 47-59
    • Thorstensen, T.1    Grini, P.E.2    Mercy, I.S.3    Alm, V.4    Erdal, S.5
  • 43
    • 34147156583 scopus 로고    scopus 로고
    • A site to remember: H3K36 methylation a mark for histone deacetylation
    • Lee JS, Shilatifard A, (2007) A site to remember: H3K36 methylation a mark for histone deacetylation. Mutat Res 618: 130-134.
    • (2007) Mutat Res , vol.618 , pp. 130-134
    • Lee, J.S.1    Shilatifard, A.2
  • 44
    • 70349311423 scopus 로고    scopus 로고
    • Evolution and pleiotropy of TRITHORAX function in Arabidopsis
    • Avramova Z, (2009) Evolution and pleiotropy of TRITHORAX function in Arabidopsis. Int J Dev Biol 53: 371-381.
    • (2009) Int J Dev Biol , vol.53 , pp. 371-381
    • Avramova, Z.1
  • 45
    • 0034603990 scopus 로고    scopus 로고
    • The PWWP domain: a potential protein-protein interaction domain in nuclear proteins influencing differentiation?
    • Stec I, Nagl SB, van Ommen GJ, den Dunnen JT, (2000) The PWWP domain: a potential protein-protein interaction domain in nuclear proteins influencing differentiation? FEBS Lett 473: 1-5.
    • (2000) FEBS Lett , vol.473 , pp. 1-5
    • Stec, I.1    Nagl, S.B.2    van Ommen, G.J.3    den Dunnen, J.T.4
  • 46
    • 60549108739 scopus 로고    scopus 로고
    • Regulation of Set9-mediated H4K20 methylation by a PWWP domain protein
    • Wang Y, Reddy B, Thompson J, Wang H, Noma K, et al. (2009) Regulation of Set9-mediated H4K20 methylation by a PWWP domain protein. Mol Cell 33: 428-437.
    • (2009) Mol Cell , vol.33 , pp. 428-437
    • Wang, Y.1    Reddy, B.2    Thompson, J.3    Wang, H.4    Noma, K.5
  • 47
    • 79959494918 scopus 로고    scopus 로고
    • Structural and histone binding ability characterizations of human PWWP domains
    • Wu H, Zeng H, Lam R, Tempel W, Amaya MF, et al. (2011) Structural and histone binding ability characterizations of human PWWP domains. PLoS One 6: e18919.
    • (2011) PLoS One , vol.6
    • Wu, H.1    Zeng, H.2    Lam, R.3    Tempel, W.4    Amaya, M.F.5
  • 49
    • 33746600716 scopus 로고    scopus 로고
    • Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins
    • Papp B, Muller J, (2006) Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins. Genes Dev 20: 2041-2054.
    • (2006) Genes Dev , vol.20 , pp. 2041-2054
    • Papp, B.1    Muller, J.2
  • 50
    • 0028861418 scopus 로고
    • The PHD finger: implications for chromatin-mediated transcriptional regulation
    • Aasland R, Gibson TJ, Stewart AF, (1995) The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 20: 56-59.
    • (1995) Trends Biochem Sci , vol.20 , pp. 56-59
    • Aasland, R.1    Gibson, T.J.2    Stewart, A.F.3
  • 51
    • 33745818717 scopus 로고    scopus 로고
    • Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2
    • Pena PV, Davrazou F, Shi X, Walter KL, Verkhusha VV, et al. (2006) Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature 442: 100-103.
    • (2006) Nature , vol.442 , pp. 100-103
    • Pena, P.V.1    Davrazou, F.2    Shi, X.3    Walter, K.L.4    Verkhusha, V.V.5
  • 52
    • 48149105342 scopus 로고    scopus 로고
    • Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3
    • van Ingen H, van Schaik FM, Wienk H, Ballering J, Rehmann H, et al. (2008) Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3. Structure 16: 1245-1256.
    • (2008) Structure , vol.16 , pp. 1245-1256
    • van Ingen, H.1    van Schaik, F.M.2    Wienk, H.3    Ballering, J.4    Rehmann, H.5
  • 53
    • 84867537628 scopus 로고    scopus 로고
    • Exploring PHD Fingers and H3K4me0 Interactions with Molecular Dynamics Simulations and Binding Free Energy Calculations: AIRE-PHD1, a Comparative Study
    • Spiliotopoulos D, Spitaleri A, Musco G, (2012) Exploring PHD Fingers and H3K4me0 Interactions with Molecular Dynamics Simulations and Binding Free Energy Calculations: AIRE-PHD1, a Comparative Study. PLoS One 7: e46902.
    • (2012) PLoS One , vol.7
    • Spiliotopoulos, D.1    Spitaleri, A.2    Musco, G.3
  • 54
    • 33745840868 scopus 로고    scopus 로고
    • Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis
    • Raynaud C, Sozzani R, Glab N, Domenichini S, Perennes C, et al. (2006) Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis. Plant J 47: 395-407.
    • (2006) Plant J , vol.47 , pp. 395-407
    • Raynaud, C.1    Sozzani, R.2    Glab, N.3    Domenichini, S.4    Perennes, C.5
  • 55
    • 79953758929 scopus 로고    scopus 로고
    • The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis
    • Veiseth SV, Rahman MA, Yap KL, Fischer A, Egge-Jacobsen W, et al. (2011) The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis. PLoS Genet 7: e1001325.
    • (2011) PLoS Genet , vol.7
    • Veiseth, S.V.1    Rahman, M.A.2    Yap, K.L.3    Fischer, A.4    Egge-Jacobsen, W.5
  • 56
    • 36849072573 scopus 로고    scopus 로고
    • The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA
    • Sharif J, Muto M, Takebayashi S, Suetake I, Iwamatsu A, et al. (2007) The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA. Nature 450: 908-912.
    • (2007) Nature , vol.450 , pp. 908-912
    • Sharif, J.1    Muto, M.2    Takebayashi, S.3    Suetake, I.4    Iwamatsu, A.5
  • 57
    • 7044245474 scopus 로고    scopus 로고
    • ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain
    • Unoki M, Nishidate T, Nakamura Y, (2004) ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain. Oncogene 23: 7601-7610.
    • (2004) Oncogene , vol.23 , pp. 7601-7610
    • Unoki, M.1    Nishidate, T.2    Nakamura, Y.3
  • 58
    • 41649115827 scopus 로고    scopus 로고
    • The interaction of the SRA domain of ICBP90 with a novel domain of DNMT1 is involved in the regulation of VEGF gene expression
    • Achour M, Jacq X, Ronde P, Alhosin M, Charlot C, et al. (2008) The interaction of the SRA domain of ICBP90 with a novel domain of DNMT1 is involved in the regulation of VEGF gene expression. Oncogene 27: 2187-2197.
    • (2008) Oncogene , vol.27 , pp. 2187-2197
    • Achour, M.1    Jacq, X.2    Ronde, P.3    Alhosin, M.4    Charlot, C.5
  • 59
  • 60
    • 34247551631 scopus 로고    scopus 로고
    • Molecular characterization of three rice SET-domain proteins
    • Ding B, Zhu Y, Gao J, Yu Y, Cao KM, et al. (2007) Molecular characterization of three rice SET-domain proteins. Plant Sci 172: 1072-1078.
    • (2007) Plant Sci , vol.172 , pp. 1072-1078
    • Ding, B.1    Zhu, Y.2    Gao, J.3    Yu, Y.4    Cao, K.M.5
  • 61
    • 84868092710 scopus 로고    scopus 로고
    • The SET-Domain Protein SUVR5 Mediates H3K9me2 Deposition and Silencing at Stimulus Response Genes in a DNA Methylation-Independent Manner
    • Caro E, Stroud H, Greenberg MV, Bernatavichute YV, Feng S, et al. (2012) The SET-Domain Protein SUVR5 Mediates H3K9me2 Deposition and Silencing at Stimulus Response Genes in a DNA Methylation-Independent Manner. PLoS Genet 8: e1002995.
    • (2012) PLoS Genet , vol.8
    • Caro, E.1    Stroud, H.2    Greenberg, M.V.3    Bernatavichute, Y.V.4    Feng, S.5
  • 62
    • 0031886093 scopus 로고    scopus 로고
    • Regulation of cell proliferation by the E2F transcription factors
    • Helin K, (1998) Regulation of cell proliferation by the E2F transcription factors. Curr Opin Genet Dev 8: 28-35.
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 28-35
    • Helin, K.1
  • 64
    • 0036007583 scopus 로고    scopus 로고
    • E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue-specific expression of rice and tobacco proliferating cell nuclear antigen promoters
    • Kosugi S, Ohashi Y, (2002) E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue-specific expression of rice and tobacco proliferating cell nuclear antigen promoters. The Plant journal: for cell and molecular biology 29: 45-59.
    • (2002) The Plant Journal: For Cell and Molecular Biology , vol.29 , pp. 45-59
    • Kosugi, S.1    Ohashi, Y.2
  • 65
    • 0034796708 scopus 로고    scopus 로고
    • Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities
    • de Jager SM, Menges M, Bauer UM, Murra JA, (2001) Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities. Plant Mol Biol 47: 555-568.
    • (2001) Plant Mol Biol , vol.47 , pp. 555-568
    • de Jager, S.M.1    Menges, M.2    Bauer, U.M.3    Murra, J.A.4
  • 66
    • 0141993704 scopus 로고    scopus 로고
    • A gene-coexpression network for global discovery of conserved genetic modules
    • Stuart JM, Segal E, Koller D, Kim SK, (2003) A gene-coexpression network for global discovery of conserved genetic modules. Science 302: 249-255.
    • (2003) Science , vol.302 , pp. 249-255
    • Stuart, J.M.1    Segal, E.2    Koller, D.3    Kim, S.K.4
  • 67
    • 77957724477 scopus 로고    scopus 로고
    • Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator
    • Fu F-F, Xue H-W, (2010) Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator. Plant Physiol 154: 927-938.
    • (2010) Plant Physiol , vol.154 , pp. 927-938
    • Fu, F.-F.1    Xue, H.-W.2
  • 68
    • 34249697574 scopus 로고    scopus 로고
    • Approaches for extracting practical information from gene co-expression networks in plant biology
    • Aoki K, Ogata Y, Shibata D, (2007) Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol 48: 381-390.
    • (2007) Plant Cell Physiol , vol.48 , pp. 381-390
    • Aoki, K.1    Ogata, Y.2    Shibata, D.3
  • 69
    • 84858433962 scopus 로고    scopus 로고
    • Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice
    • Ouyang Y, Huang X, Lu Z, Yao J, (2012) Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice. BMC genomics 13: 100.
    • (2012) BMC Genomics , vol.13 , pp. 100
    • Ouyang, Y.1    Huang, X.2    Lu, Z.3    Yao, J.4
  • 70
    • 84864387269 scopus 로고    scopus 로고
    • The control of histone gene expression
    • Rattray AMJ, Mueller B, (2012) The control of histone gene expression. Biochem Soc Trans 40: 880-885.
    • (2012) Biochem Soc Trans , vol.40 , pp. 880-885
    • Rattray, A.M.J.1    Mueller, B.2
  • 73
    • 0036835483 scopus 로고    scopus 로고
    • The plant E2F-Rb pathway and epigenetic control
    • Shen WH, (2002) The plant E2F-Rb pathway and epigenetic control. Trends Plant Sci 7: 505-511.
    • (2002) Trends Plant Sci , vol.7 , pp. 505-511
    • Shen, W.H.1
  • 75
    • 0141706827 scopus 로고    scopus 로고
    • Cell cycle-dependent and cell cycle-independent control of transcription by the Drosophila E2F/RB pathway
    • Dimova DK, Stevaux O, Frolov MV, Dyson NJ, (2003) Cell cycle-dependent and cell cycle-independent control of transcription by the Drosophila E2F/RB pathway. Genes Dev 17: 2308-2320.
    • (2003) Genes Dev , vol.17 , pp. 2308-2320
    • Dimova, D.K.1    Stevaux, O.2    Frolov, M.V.3    Dyson, N.J.4
  • 76
    • 34447114508 scopus 로고    scopus 로고
    • Expression of genomic AtCYCD2;1 in Arabidopsis induces cell division at smaller cell sizes: implications for the control of plant growth
    • Qi R, John PC, (2007) Expression of genomic AtCYCD2;1 in Arabidopsis induces cell division at smaller cell sizes: implications for the control of plant growth. Plant Physiol 144: 1587-1597.
    • (2007) Plant Physiol , vol.144 , pp. 1587-1597
    • Qi, R.1    John, P.C.2
  • 77
    • 84866160389 scopus 로고    scopus 로고
    • A General G1/S-Phase Cell-Cycle Control Module in the Flowering Plant Arabidopsis thaliana
    • Zhao XA, Harashima H, Dissmeyer N, Pusch S, Weimer AK, et al. (2012) A General G1/S-Phase Cell-Cycle Control Module in the Flowering Plant Arabidopsis thaliana. PLoS Genet 8.
    • (2012) PLoS Genet 8
    • Zhao, X.A.1    Harashima, H.2    Dissmeyer, N.3    Pusch, S.4    Weimer, A.K.5
  • 79
    • 34249774911 scopus 로고    scopus 로고
    • Genome-wide identification and expression analysis of rice cell cycle genes
    • Guo J, Song J, Wang F, Zhang XS, (2007) Genome-wide identification and expression analysis of rice cell cycle genes. Plant Mol Biol 64: 349-360.
    • (2007) Plant Mol Biol , vol.64 , pp. 349-360
    • Guo, J.1    Song, J.2    Wang, F.3    Zhang, X.S.4
  • 80
  • 81
    • 34547870179 scopus 로고    scopus 로고
    • Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice
    • Shultz RW, Tatineni VM, Hanley-Bowdoin L, Thompson WF, (2007) Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice. Plant Physiol 144: 1697-1714.
    • (2007) Plant Physiol , vol.144 , pp. 1697-1714
    • Shultz, R.W.1    Tatineni, V.M.2    Hanley-Bowdoin, L.3    Thompson, W.F.4
  • 82
    • 0034037507 scopus 로고    scopus 로고
    • The retinoblastoma protein - a bridge to heterochromatin
    • Williams L, Grafi G, (2000) The retinoblastoma protein- a bridge to heterochromatin. Trends Plant Sci 5: 239-240.
    • (2000) Trends Plant Sci , vol.5 , pp. 239-240
    • Williams, L.1    Grafi, G.2
  • 83
    • 77953205281 scopus 로고    scopus 로고
    • The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development
    • Gao X, Liang W, Yin C, Ji S, Wang H, et al. (2010) The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development. Plant Physiol 153: 728-740.
    • (2010) Plant Physiol , vol.153 , pp. 728-740
    • Gao, X.1    Liang, W.2    Yin, C.3    Ji, S.4    Wang, H.5
  • 84
    • 74549217237 scopus 로고    scopus 로고
    • PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice
    • Kobayashi K, Maekawa M, Miyao A, Hirochika H, Kyozuka J, (2010) PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice. Plant & cell physiology 51: 47-57.
    • (2010) Plant & Cell Physiology , vol.51 , pp. 47-57
    • Kobayashi, K.1    Maekawa, M.2    Miyao, A.3    Hirochika, H.4    Kyozuka, J.5
  • 85
    • 84863110612 scopus 로고    scopus 로고
    • Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene
    • Kobayashi K, Yasuno N, Sato Y, Yoda M, Yamazaki R, et al. (2012) Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene. Plant Cell 24: 1848-1859.
    • (2012) Plant Cell , vol.24 , pp. 1848-1859
    • Kobayashi, K.1    Yasuno, N.2    Sato, Y.3    Yoda, M.4    Yamazaki, R.5
  • 86
    • 84867121806 scopus 로고    scopus 로고
    • CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice
    • Sang X, Li Y, Luo Z, Ren D, Fang L, et al. (2012) CHIMERIC FLORAL ORGANS1, encoding a monocot-specific MADS box protein, regulates floral organ identity in rice. Plant Physiol 160: 788-807.
    • (2012) Plant Physiol , vol.160 , pp. 788-807
    • Sang, X.1    Li, Y.2    Luo, Z.3    Ren, D.4    Fang, L.5
  • 87
    • 0027357294 scopus 로고
    • Gametophytic and sporophytic expression of an anther-specific Arabidopsis thaliana gene
    • Roberts MR, Foster GD, Blundell RP, Robinson SW, Kumar A, et al. (1993) Gametophytic and sporophytic expression of an anther-specific Arabidopsis thaliana gene. Plant J 3: 111-120.
    • (1993) Plant J , vol.3 , pp. 111-120
    • Roberts, M.R.1    Foster, G.D.2    Blundell, R.P.3    Robinson, S.W.4    Kumar, A.5
  • 88
    • 33644513998 scopus 로고    scopus 로고
    • Male-fertility genes expressed in male flower buds of Silene latifolia include homologs of anther-specific genes
    • Ageez A, Kazama Y, Sugiyama R, Kawano S, (2005) Male-fertility genes expressed in male flower buds of Silene latifolia include homologs of anther-specific genes. Genes Genet Syst 80: 403-413.
    • (2005) Genes Genet Syst , vol.80 , pp. 403-413
    • Ageez, A.1    Kazama, Y.2    Sugiyama, R.3    Kawano, S.4
  • 89
    • 44449153431 scopus 로고    scopus 로고
    • Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development
    • Yao SG, Ohmori S, Kimizu M, Yoshida H, (2008) Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development. Plant & cell physiology 49: 853-857.
    • (2008) Plant & Cell Physiology , vol.49 , pp. 853-857
    • Yao, S.G.1    Ohmori, S.2    Kimizu, M.3    Yoshida, H.4
  • 90
    • 0033939223 scopus 로고    scopus 로고
    • Spatially and temporally regulated expression of rice MADS box genes with similarity to Arabidopsis class A, B and C genes
    • Kyozuka J, Kobayashi T, Morita M, Shimamoto K, (2000) Spatially and temporally regulated expression of rice MADS box genes with similarity to Arabidopsis class A, B and C genes. Plant & cell physiology 41: 710-718.
    • (2000) Plant & Cell Physiology , vol.41 , pp. 710-718
    • Kyozuka, J.1    Kobayashi, T.2    Morita, M.3    Shimamoto, K.4
  • 91
    • 65249100654 scopus 로고    scopus 로고
    • MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis
    • Adamczyk BJ, Fernandez DE, (2009) MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis. Plant Physiol 149: 1713-1723.
    • (2009) Plant Physiol , vol.149 , pp. 1713-1723
    • Adamczyk, B.J.1    Fernandez, D.E.2
  • 92
    • 67349140658 scopus 로고    scopus 로고
    • Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice
    • Ouyang Y, Chen J, Xie W, Wang L, Zhang Q, (2009) Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice. Plant Mol Biol 70: 341-357.
    • (2009) Plant Mol Biol , vol.70 , pp. 341-357
    • Ouyang, Y.1    Chen, J.2    Xie, W.3    Wang, L.4    Zhang, Q.5
  • 93
    • 12344335569 scopus 로고    scopus 로고
    • DAGchainer: a tool for mining segmental genome duplications and synteny
    • Haas BJ, Delcher AL, Wortman JR, Salzberg SL, (2004) DAGchainer: a tool for mining segmental genome duplications and synteny. Bioinformatics 20: 3643-3646.
    • (2004) Bioinformatics , vol.20 , pp. 3643-3646
    • Haas, B.J.1    Delcher, A.L.2    Wortman, J.R.3    Salzberg, S.L.4
  • 94
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 95
    • 0025612425 scopus 로고
    • Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence
    • Guruprasad K, Reddy BV, Pandit MW, (1990) Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Eng 4: 155-161.
    • (1990) Protein Eng , vol.4 , pp. 155-161
    • Guruprasad, K.1    Reddy, B.V.2    Pandit, M.W.3
  • 96
    • 0032918558 scopus 로고    scopus 로고
    • Plant cis-acting regulatory DNA elements (PLACE) database: 1999
    • Higo K, Ugawa Y, Iwamoto M, Korenaga T, (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res 27: 297-300.
    • (1999) Nucleic Acids Res , vol.27 , pp. 297-300
    • Higo, K.1    Ugawa, Y.2    Iwamoto, M.3    Korenaga, T.4
  • 97
    • 0025831356 scopus 로고
    • SIGNAL SCAN: a computer program that scans DNA sequences for eukaryotic transcriptional elements
    • Prestridge DS, (1991) SIGNAL SCAN: a computer program that scans DNA sequences for eukaryotic transcriptional elements. Computer applications in the biosciences: CABIOS 7: 203-206.
    • (1991) Computer Applications in the Biosciences: CABIOS , vol.7 , pp. 203-206
    • Prestridge, D.S.1
  • 98
    • 77950104996 scopus 로고    scopus 로고
    • A dynamic gene expression atlas covering the entire life cycle of rice
    • Wang L, Xie WB, Chen Y, Tang WJ, Yang JY, et al. (2010) A dynamic gene expression atlas covering the entire life cycle of rice. Plant J 61: 752-766.
    • (2010) Plant J , vol.61 , pp. 752-766
    • Wang, L.1    Xie, W.B.2    Chen, Y.3    Tang, W.J.4    Yang, J.Y.5
  • 99
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5
  • 100
    • 77954299992 scopus 로고    scopus 로고
    • agriGO: a GO analysis toolkit for the agricultural community
    • Du Z, Zhou X, Ling Y, Zhang Z, Su Z, (2010) agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 38: W64-70.
    • (2010) Nucleic Acids Res , vol.38
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.