메뉴 건너뛰기




Volumn 3, Issue 4, 2010, Pages 773-782

Rice SUVH histone methyltransferase genes display specific functions in chromatin modification and retrotransposon repression

Author keywords

demethylases; DNA methylation; epigenetic modification; Plant histone methyltransferases; retrotransposon; rice chromatin; SET domain

Indexed keywords

ORYZA SATIVA;

EID: 77955143767     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1093/mp/ssq030     Document Type: Article
Times cited : (73)

References (35)
  • 2
    • 0035503921 scopus 로고    scopus 로고
    • The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes
    • Baumbusch, L.O., et al. (2001). The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes. Nucleic Acids Res. 29, 4319-4333.
    • (2001) Nucleic Acids Res , vol.29 , pp. 4319-4333
    • Baumbusch, L.O.1
  • 3
    • 33748323138 scopus 로고    scopus 로고
    • Epigenetic regulation of the rice retrotransposon Tos17
    • Cheng, C., Daigen, M., and Hirochika, H. (2006). Epigenetic regulation of the rice retrotransposon Tos17. Mol. Genet. Genomics. 276, 378-390.
    • (2006) Mol. Genet. Genomics , vol.276 , pp. 378-390
    • Cheng, C.1    Daigen, M.2    Hirochika, H.3
  • 4
    • 34250662999 scopus 로고    scopus 로고
    • A WUSCHEL- LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development
    • Dai, M., Hu, Y., Zhao, Y., Liu, H., and Zhou, D.X. (2007). A WUSCHEL- LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development. Plant Physiol. 144, 380-390.
    • (2007) Plant Physiol , vol.144 , pp. 380-390
    • Dai, M.1    Hu, Y.2    Zhao, Y.3    Liu, H.4    Zhou, D.X.5
  • 5
    • 34247630796 scopus 로고    scopus 로고
    • SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice
    • Ding, Y., et al. (2007). SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell. 19, 9-22.
    • (2007) Plant Cell , vol.19 , pp. 9-22
    • Ding, Y.1
  • 6
    • 33745454548 scopus 로고    scopus 로고
    • Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
    • Ebbs, M.L., and Bender, J. (2006). Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell. 18, 1166-1176.
    • (2006) Plant Cell , vol.18 , pp. 1166-1176
    • Ebbs, M.L.1    Bender, J.2
  • 7
    • 27944500697 scopus 로고    scopus 로고
    • H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases
    • Ebbs, M.L., Bartee, L., and Bender, J. (2005). H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases. Mol. Cell. Biol. 25, 10507-10515.
    • (2005) Mol. Cell. Biol , vol.25 , pp. 10507-10515
    • Ebbs, M.L.1    Bartee, L.2    Bender, J.3
  • 8
    • 33646048752 scopus 로고    scopus 로고
    • Chromosomal histone modification patterns: From conservation to diversity
    • Fuchs, J., Demidov, D., Houben, A., and Schubert, I. (2006). Chromosomal histone modification patterns: from conservation to diversity. Trends Plant Sci. 11, 199-208.
    • (2006) Trends Plant Sci , vol.11 , pp. 199-208
    • Fuchs, J.1    Demidov, D.2    Houben, A.3    Schubert, I.4
  • 9
    • 0037023349 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
    • Goff, S.A., et al. (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science (New York, NY). 296, 92-100.
    • (2002) Science (New York, NY) , vol.296 , pp. 92-100
    • Goff, S.A.1
  • 13
    • 34447126368 scopus 로고    scopus 로고
    • Down-regulation of a SILENT INFORMATION REGULATOR2- related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice
    • Huang, L., Sun, Q., Qin, F., Li, C., Zhao, Y., and Zhou, D.X. (2007). Down-regulation of a SILENT INFORMATION REGULATOR2- related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice. Plant Physiol. 144, 1508-1519.
    • (2007) Plant Physiol , vol.144 , pp. 1508-1519
    • Huang, L.1    Sun, Q.2    Qin, F.3    Li, C.4    Zhao, Y.5    Zhou, D.X.6
  • 14
    • 11144354402 scopus 로고    scopus 로고
    • Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana
    • Jackson, J.P., et al. (2004). Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma. 112, 308-315.
    • (2004) Chromosoma , vol.112 , pp. 308-315
    • Jackson, J.P.1
  • 15
    • 0037041422 scopus 로고    scopus 로고
    • Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
    • Jackson, J.P., Lindroth, A.M., Cao,X., and Jacobsen, S.E. (2002). Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature. 416, 556-560.
    • (2002) Nature , vol.416 , pp. 556-560
    • Jackson, J.P.1    Caox., M.L.A.2    Jacobsen, S.E.3
  • 16
    • 33846931283 scopus 로고    scopus 로고
    • The SRA methyl-cytosine-binding domain links DNA and histone methylation
    • Johnson, L.M., et al. (2007). The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr. Biol. 17,379-384.
    • (2007) Curr. Biol , vol.17 , pp. 379-384
    • Johnson, L.M.1
  • 17
    • 33644819713 scopus 로고    scopus 로고
    • Establishment of the vernalization-responsive, winter- annual habit in Arabidopsis requires a putative histone H3 methyl transferase
    • Kim, S.Y., He, Y., Jacob, Y., Noh, Y.S., Michaels, S., and Amasino, R. (2005). Establishment of the vernalization-responsive, winter- annual habit in Arabidopsis requires a putative histone H3 methyl transferase. Plant Cell. 17, 3301-3310.
    • (2005) Plant Cell , vol.17 , pp. 3301-3310
    • Kim, S.Y.1    He, Y.2    Jacob, Y.3    Noh, Y.S.4    Michaels, S.5    Amasino, R.6
  • 18
    • 33747455678 scopus 로고    scopus 로고
    • JmjC-domain-containing proteins and histone demethylation
    • Klose,R.J.,Kallin,E.M.,and Zhang, Y. (2006). JmjC-domain-containing proteins and histone demethylation. Nature Rev. 7, 715-727.
    • (2006) Nature Rev , vol.7 , pp. 715-727
    • Klose, R.J.1    Kallin, E.M.2    Zhang, Y.3
  • 19
    • 4243085624 scopus 로고    scopus 로고
    • Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification
    • Lippman, Z., May, B., Yordan, C., Singer, T., and Martienssen, R. (2003). Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol. 1, E67.
    • (2003) PLoS Biol , vol.1
    • Lippman, Z.1    May, B.2    Yordan, C.3    Singer, T.4    Martienssen, R.5
  • 20
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
    • Livak, K.J., and Schmittgen, T.D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods (San Diego, Calif.). 25, 402-408.
    • (2001) Methods (San Diego, Calif.) , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 21
    • 0037309997 scopus 로고    scopus 로고
    • Structure of SET domain proteins: A new twist on histone methylation
    • Marmorstein, R. (2003). Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem. Sci. 28, 59-62.
    • (2003) Trends Biochem. Sci , vol.28 , pp. 59-62
    • Marmorstein, R.1
  • 22
    • 23844494476 scopus 로고    scopus 로고
    • Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis
    • Mathieu, O., Probst, A.V., and Paszkowski, J. (2005). Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis. EMBO J. 24, 2783-2791.
    • (2005) EMBO J , vol.24 , pp. 2783-2791
    • Mathieu, O.1    Probst, A.V.2    Paszkowski, J.3
  • 23
    • 17844387167 scopus 로고    scopus 로고
    • Pivotal role of AtSUVH2 in heterochro- matic histone methylation and gene silencing in Arabidopsis
    • Naumann, K., et al. (2005). Pivotal role of AtSUVH2 in heterochro- matic histone methylation and gene silencing in Arabidopsis. EMBO J. 24, 1418-1429.
    • (2005) EMBO J , vol.24 , pp. 1418-1429
    • Naumann, K.1
  • 24
    • 38949151063 scopus 로고    scopus 로고
    • Gene silencing in plants using artificial microRNAs and other small RNAs
    • Ossowski, S., Schwab, R., and Weigel, D. (2008). Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J. 53, 674-690.
    • (2008) Plant J , vol.53 , pp. 674-690
    • Ossowski, S.1    Schwab, R.2    Weigel, D.3
  • 25
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • Paterson, A.H., Bowers, J.E., and Chapman, B.A. (2004). Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc. Natl Acad. Sci. USA. 101, 9903-9908.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 26
    • 0034632829 scopus 로고    scopus 로고
    • Regulation of chromatin structure by site- specific histone H3 methyltransferases
    • Rea, S., et al. (2000). Regulation of chromatin structure by site- specific histone H3 methyltransferases. Nature. 406, 593-599.
    • (2000) Nature , vol.406 , pp. 593-599
    • Rea, S.1
  • 27
    • 38549116060 scopus 로고    scopus 로고
    • Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
    • Saze, H., Shiraishi, A., Miura, A., and Kakutani, T. (2008). Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. Science (New York, NY). 319, 462-465.
    • (2008) Science (New York, NY) , vol.319 , pp. 462-465
    • Saze, H.1    Shiraishi, A.2    Miura, A.3    Kakutani, T.4
  • 28
    • 0242348752 scopus 로고    scopus 로고
    • Histone lysine methylation: A signature for chromatin function
    • Sims, R.J., 3rd, Nishioka, K., and Reinberg, D. (2003). Histone lysine methylation: a signature for chromatin function. Trends Genet. 19, 629-639.
    • (2003) Trends Genet. , vol.19 , pp. 629-639
    • Sims Iii, R.J.1    Nishioka, K.2    Reinberg, D.3
  • 29
    • 0037011060 scopus 로고    scopus 로고
    • DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis
    • Soppe, W.J., et al. (2002). DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J. 21, 6549-6559.
    • (2002) EMBO J , vol.21 , pp. 6549-6559
    • Soppe, W.J.1
  • 30
    • 51649112913 scopus 로고    scopus 로고
    • Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development
    • Sun, Q., and Zhou, D.X. (2008). Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development. Proc. Natl Acad. Sci. USA. 105, 13679-13684.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 13679-13684
    • Sun, Q.1    Zhou, D.X.2
  • 31
    • 0041806583 scopus 로고    scopus 로고
    • Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin
    • Tariq, M., Saze, H., Probst, A.V., Lichota, J., Habu, Y., and Paszkowski, J. (2003). Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin. Proc. Natl Acad. Sci. USA. 100, 8823-8827.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 8823-8827
    • Tariq, M.1    Saze, H.2    Probst, A.V.3    Lichota, J.4    Habu, Y.5    Paszkowski, J.6
  • 32
    • 33644858548 scopus 로고    scopus 로고
    • Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
    • Tran, R.K., et al. (2005). Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biol. 6, R90.
    • (2005) Genome Biol , vol.6
    • Tran, R.K.1
  • 33
    • 34347324121 scopus 로고    scopus 로고
    • Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27
    • Turck, F., et al. (2007). Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27. PLoS Genet. 3, e86.
    • (2007) PLoS Genet , vol.3
    • Turck, F.1
  • 34
    • 28544449208 scopus 로고    scopus 로고
    • Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36
    • Zhao, Z., Yu, Y., Meyer, D., Wu, C., and Shen, W.H. (2005). Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36. Nature Cell Biol. 7, 1256-1260.
    • (2005) Nature Cell Biol , vol.7 , pp. 1256-1260
    • Zhao, Z.1    Yu, Y.2    Meyer, D.3    Wu, C.4    Shen, W.H.5
  • 35
    • 66349127923 scopus 로고    scopus 로고
    • Regulatory mechanism of histone epigenetic modifications in plants
    • Zhou, D.X. (2009). Regulatory mechanism of histone epigenetic modifications in plants. Epigenetics. 4, 15-18.
    • (2009) Epigenetics , vol.4 , pp. 15-18
    • Zhou, D.X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.