메뉴 건너뛰기




Volumn 15, Issue 6, 2013, Pages 1687-1706

Microbial and functional diversity of a subterrestrial high pH groundwater associated to serpentinization

Author keywords

[No Author keywords available]

Indexed keywords

GROUND WATER; RNA 16S;

EID: 84878633275     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12034     Document Type: Article
Times cited : (101)

References (78)
  • 1
    • 59649083173 scopus 로고    scopus 로고
    • Distribution and diversity of autotrophic bacteria in groundwater systems based on the analysis of RuBisCO genotypes
    • Alfreider, A., Vogt, C., Geiger-Kaiser, M., and Psenner, R. (2009) Distribution and diversity of autotrophic bacteria in groundwater systems based on the analysis of RuBisCO genotypes. Syst Appl Microbiol 32: 140-150.
    • (2009) Syst Appl Microbiol , vol.32 , pp. 140-150
    • Alfreider, A.1    Vogt, C.2    Geiger-Kaiser, M.3    Psenner, R.4
  • 2
    • 51649106372 scopus 로고    scopus 로고
    • Fingerprinting the genetic diversity of the biotin carboxylase gene (accC) in aquatic ecosystems as a potential marker for studies of carbon dioxide assimilation in the dark
    • Auguet, J.C., Borrego, C.M., Baneras, L., and Casamayor, E.O. (2008) Fingerprinting the genetic diversity of the biotin carboxylase gene (accC) in aquatic ecosystems as a potential marker for studies of carbon dioxide assimilation in the dark. Environ Microbiol 10: 2527-2536.
    • (2008) Environ Microbiol , vol.10 , pp. 2527-2536
    • Auguet, J.C.1    Borrego, C.M.2    Baneras, L.3    Casamayor, E.O.4
  • 3
    • 84878655976 scopus 로고
    • Trace element and microbiological studies of alkaline groundwaters in Oman, Arabian Gulf: a natural analogue for cement pore-waters. Rep. Fluid Processes Research Group, Brit Geol Surv FLPU
    • Bath, A.H., Christofi, N., Neal, C., Philip, J.C., Cave, M.R., McKinley, I.G., and Berner, U. (1987) Trace element and microbiological studies of alkaline groundwaters in Oman, Arabian Gulf: a natural analogue for cement pore-waters. Rep. Fluid Processes Research Group, Brit Geol Surv FLPU, 87-92.
    • (1987) , pp. 87-92
    • Bath, A.H.1    Christofi, N.2    Neal, C.3    Philip, J.C.4    Cave, M.R.5    McKinley, I.G.6    Berner, U.7
  • 6
    • 67349201745 scopus 로고    scopus 로고
    • An alkaline spring system within the Del Puerto Ophiolite (California, USA): a Mars analog site. Planetary and Space
    • Blank, J.G., Green, S.J., Blake, D., Valley, J.W., Kita, N.T., Treiman, A., and Dobson, P.F. (2009) An alkaline spring system within the Del Puerto Ophiolite (California, USA): a Mars analog site. Planetary and Space. Science 57: 533-540.
    • (2009) Science , vol.57 , pp. 533-540
    • Blank, J.G.1    Green, S.J.2    Blake, D.3    Valley, J.W.4    Kita, N.T.5    Treiman, A.6    Dobson, P.F.7
  • 7
    • 33747335397 scopus 로고    scopus 로고
    • Phylogeny of 16S rRNA, ribulose 1,5-bisphosphate carboxylase/oxygenase, and adenosine 5-phosphosulfate reductase genes from gamma and alphaproteobacterial symbionts in gutless marine worms (Oligochaeta) from Bermuda and the Bahamas
    • Blazejak, A., Kuever, J., Erséus, C., Amann, R., and Dubilier, N. (2006) Phylogeny of 16S rRNA, ribulose 1, 5-bisphosphate carboxylase/oxygenase, and adenosine 5-phosphosulfate reductase genes from gamma and alphaproteobacterial symbionts in gutless marine worms (Oligochaeta) from Bermuda and the Bahamas. Appl Environ Microbiol 72: 5527-5536.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5527-5536
    • Blazejak, A.1    Kuever, J.2    Erséus, C.3    Amann, R.4    Dubilier, N.5
  • 8
    • 33748777657 scopus 로고    scopus 로고
    • Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem
    • Brazelton, W.J., Schrenk, M.O., Kelley, D.S., and Baross, J.A. (2006) Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem. Appl Environ Microbiol 72: 6257-6270.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6257-6270
    • Brazelton, W.J.1    Schrenk, M.O.2    Kelley, D.S.3    Baross, J.A.4
  • 9
    • 80052574209 scopus 로고    scopus 로고
    • Physiological differentiation within a single-species biofilm fueled by serpentinization
    • doi:10.1128/mBio.00127-11.
    • Brazelton, W.J., Mehta, M.P., Kelley, D.S., and Baross, J.A. (2011) Physiological differentiation within a single-species biofilm fueled by serpentinization. mBio 2: e00127-11. doi:10.1128/mBio.00127-11.
    • (2011) mBio , vol.2
    • Brazelton, W.J.1    Mehta, M.P.2    Kelley, D.S.3    Baross, J.A.4
  • 10
    • 84862703105 scopus 로고    scopus 로고
    • Metagenomic evidence for h(2) oxidation and h(2) production by serpentinite-hosted subsurface microbial communities
    • Brazelton, W.J., Nelson, B., and Schrenk, M.O. (2012) Metagenomic evidence for h(2) oxidation and h(2) production by serpentinite-hosted subsurface microbial communities. Front Microbiol 2: 268.
    • (2012) Front Microbiol , vol.2 , pp. 268
    • Brazelton, W.J.1    Nelson, B.2    Schrenk, M.O.3
  • 11
    • 51949095627 scopus 로고    scopus 로고
    • Anaerobic oxidation of methane: mechanisms, bioenergetics, and the ecology of associated microorganisms
    • Caldwell, S.L., Laidler, J.R., Brewer, E.A., Eberly, J.O., Sandborgh, S.C., and Colwell, F.S. (2008) Anaerobic oxidation of methane: mechanisms, bioenergetics, and the ecology of associated microorganisms. Environ Sci Technol 42: 6791-6799.
    • (2008) Environ Sci Technol , vol.42 , pp. 6791-6799
    • Caldwell, S.L.1    Laidler, J.R.2    Brewer, E.A.3    Eberly, J.O.4    Sandborgh, S.C.5    Colwell, F.S.6
  • 12
    • 78649670032 scopus 로고    scopus 로고
    • Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing
    • Callaway, T.R., Dowd, S.E., Edrington, T.S., Anderson, R.C., Krueger, N., Bauer, N., etal. (2010) Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing. J Anim Sci 88: 3977-3983.
    • (2010) J Anim Sci , vol.88 , pp. 3977-3983
    • Callaway, T.R.1    Dowd, S.E.2    Edrington, T.S.3    Anderson, R.C.4    Krueger, N.5    Bauer, N.6
  • 14
    • 8144229173 scopus 로고    scopus 로고
    • Abundance of reverse tricarboxylic acid cycle genes in free-living microorganisms at deep-sea hydrothermal vents
    • Campbell, B.J., and Cary, S.C. (2004) Abundance of reverse tricarboxylic acid cycle genes in free-living microorganisms at deep-sea hydrothermal vents. Appl Environ Microbiol 70: 6282-6289.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6282-6289
    • Campbell, B.J.1    Cary, S.C.2
  • 15
    • 0141816888 scopus 로고    scopus 로고
    • Evidence of chemolithoautotrophy in the bacterial community associated with Alvinella pompejana, a hydrothermal vent polychaete
    • Campbell, B.J., Stein, J.L., and Cary, S.C. (2003) Evidence of chemolithoautotrophy in the bacterial community associated with Alvinella pompejana, a hydrothermal vent polychaete. Appl Environ Microbiol 69: 5070-5078.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5070-5078
    • Campbell, B.J.1    Stein, J.L.2    Cary, S.C.3
  • 16
    • 84878630142 scopus 로고    scopus 로고
    • Serpentinization fluids craft microbial habitat. Soil and Biota of Serpentine: A World View Northeastern 16 (Special Issue 5) : .
    • Cardace, D., and Hoehler, T.M. (2009) Serpentinization fluids craft microbial habitat. Soil and Biota of Serpentine: A World View Northeastern 16 (Special Issue 5) 272: 284.
    • (2009) , vol.272 , pp. 284
    • Cardace, D.1    Hoehler, T.M.2
  • 17
    • 53749096964 scopus 로고    scopus 로고
    • Environmental genomics reveals a single-species ecosystem deep within Earth
    • Chivian, D., Brodie, E.L., Alm, E.J., Culley, D.E., Dehal, P.S., DeSantis, T.Z., etal. (2008) Environmental genomics reveals a single-species ecosystem deep within Earth. Science 322: 275-278.
    • (2008) Science , vol.322 , pp. 275-278
    • Chivian, D.1    Brodie, E.L.2    Alm, E.J.3    Culley, D.E.4    Dehal, P.S.5    DeSantis, T.Z.6
  • 18
    • 84878636718 scopus 로고    scopus 로고
    • Clesceri, L.S., Greenberg, A.E., and Eaton, A.D. (eds) 20th edn. Washington, DC, USA: American Public Health Association.
    • Clesceri, L.S., Greenberg, A.E., and Eaton, A.D. (eds) (1998) Standard Methods for the Determination of Water and Wastewater, Part 300, Vol. 33, 20th edn. Washington, DC, USA: American Public Health Association.
    • (1998) Standard Methods for the Determination of Water and Wastewater, Part 300 , vol.33
  • 19
    • 0037251969 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
    • Cole, J.R., Chai, B., Marsh, T.L., Farris, R.J., Wang, Q., Kulam, S.A., etal. (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31: 442-443.
    • (2003) Nucleic Acids Res , vol.31 , pp. 442-443
    • Cole, J.R.1    Chai, B.2    Marsh, T.L.3    Farris, R.J.4    Wang, Q.5    Kulam, S.A.6
  • 20
    • 4444222910 scopus 로고    scopus 로고
    • Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: response of methanogens and methanotrophs to environmental change
    • Coolen, M.J.L., Hopmans, E.C., Rijpstra, W.I.C., Muyzer, G., Schouten, S., Volkman, J.K., and Sinninghe Damst'e, J.S. (2004) Evolution of the methane cycle in Ace Lake (Antarctica) during the Holocene: response of methanogens and methanotrophs to environmental change. Org Geochem 35: 1151-1167.
    • (2004) Org Geochem , vol.35 , pp. 1151-1167
    • Coolen, M.J.L.1    Hopmans, E.C.2    Rijpstra, W.I.C.3    Muyzer, G.4    Schouten, S.5    Volkman, J.K.6    Sinninghe Damst'e, J.S.7
  • 21
    • 0032746991 scopus 로고    scopus 로고
    • Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments
    • Costello, A.M., and Lidstrom, M.E. (1999) Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments. Appl Environ Microbiol 65: 5066-5074.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5066-5074
    • Costello, A.M.1    Lidstrom, M.E.2
  • 22
    • 0034021744 scopus 로고    scopus 로고
    • Molecular ecological analysis of the succession and diversity of sulfate-reducing bacteria in the mouse gastrointestinal tract
    • Deplancke, B., Hristova, K.R., Oakley, H.A., McCracken, V.J., Aminov, R., Mackie, R.I., and Gaskins, H.R. (2000) Molecular ecological analysis of the succession and diversity of sulfate-reducing bacteria in the mouse gastrointestinal tract. Appl Environ Microbiol 66: 2166-2174.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2166-2174
    • Deplancke, B.1    Hristova, K.R.2    Oakley, H.A.3    McCracken, V.J.4    Aminov, R.5    Mackie, R.I.6    Gaskins, H.R.7
  • 23
    • 53749097505 scopus 로고    scopus 로고
    • Polymicrobial nature of chronic diabetic foot ulcer biofilm infections determined using bacterial tag encoded FLX amplicon pyrosequencing (bTEFAP)
    • Dowd, S.E., Wolcott, R.D., Sun, Y., McKeehan, T., Smith, E., and Rhoads, D. (2008) Polymicrobial nature of chronic diabetic foot ulcer biofilm infections determined using bacterial tag encoded FLX amplicon pyrosequencing (bTEFAP). PLoS ONE 3: e3326.
    • (2008) PLoS ONE , vol.3
    • Dowd, S.E.1    Wolcott, R.D.2    Sun, Y.3    McKeehan, T.4    Smith, E.5    Rhoads, D.6
  • 24
    • 39049180493 scopus 로고    scopus 로고
    • [Thiobacillus sajanensis sp. nov., a new obligately autotrophic sulfur-oxidizing bacterium isolated from Khoito-Gol hydrogen-sulfide springs, Buryatia]
    • Dul'tseva, N.M., Turova, T.P., Spiridonova, E.M., Kolganova, T.V., Osipov, G.A., and Gorlenko, V.M. (2006) [Thiobacillus sajanensis sp. nov., a new obligately autotrophic sulfur-oxidizing bacterium isolated from Khoito-Gol hydrogen-sulfide springs, Buryatia]. Mikrobiologiia 75: 670-681.
    • (2006) Mikrobiologiia , vol.75 , pp. 670-681
    • Dul'tseva, N.M.1    Turova, T.P.2    Spiridonova, E.M.3    Kolganova, T.V.4    Osipov, G.A.5    Gorlenko, V.M.6
  • 25
    • 0028351234 scopus 로고
    • Alterations in total bacteria, iodonitrophenyltetrazolium (INT)-positive bacteria, and heterotrophic plate counts of bottled mineral water
    • Ferreira, A.C., Morais, P.V., and da Costa, M.S. (1994) Alterations in total bacteria, iodonitrophenyltetrazolium (INT)-positive bacteria, and heterotrophic plate counts of bottled mineral water. Can J Microbiol 40: 72-77.
    • (1994) Can J Microbiol , vol.40 , pp. 72-77
    • Ferreira, A.C.1    Morais, P.V.2    da Costa, M.S.3
  • 26
    • 62249172960 scopus 로고    scopus 로고
    • Prokaryotic populations and activities in an interbedded coal deposit, including a previously buried section (1.6-2.3km) above ~150 Ma basement rock
    • Fry, J.C., Horsefield, B., Sykes, R., Cragg, B.A., Heywood, C., Kim, G.T., etal. (2009) Prokaryotic populations and activities in an interbedded coal deposit, including a previously buried section (1.6-2.3km) above ~150 Ma basement rock. Geomicrobiol J 26: 163-178.
    • (2009) Geomicrobiol J , vol.26 , pp. 163-178
    • Fry, J.C.1    Horsefield, B.2    Sykes, R.3    Cragg, B.A.4    Heywood, C.5    Kim, G.T.6
  • 27
    • 53749085723 scopus 로고    scopus 로고
    • the distribution of microbial taxa in the subsurface water of the Kalahari Shield, South Africa
    • Gihring, T., Moser, D., Lin, L.-H., Davidson, M., Onstott, T., Morgan, L., etal. (2006) the distribution of microbial taxa in the subsurface water of the Kalahari Shield, South Africa. Geomicrobiology 23: 415-430.
    • (2006) Geomicrobiology , vol.23 , pp. 415-430
    • Gihring, T.1    Moser, D.2    Lin, L.-H.3    Davidson, M.4    Onstott, T.5    Morgan, L.6
  • 28
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good, I.J. (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 30
    • 77957860163 scopus 로고    scopus 로고
    • V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
    • Hartmann, M., Howes, C.G., Abarenkov, K., Mohn, W.W., and Nilsson, R.H. (2010) V-Xtractor: an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences. J Microbiol Methods 83: 250-253.
    • (2010) J Microbiol Methods , vol.83 , pp. 250-253
    • Hartmann, M.1    Howes, C.G.2    Abarenkov, K.3    Mohn, W.W.4    Nilsson, R.H.5
  • 32
    • 37749049449 scopus 로고    scopus 로고
    • An energy balance concept for habitability
    • Hoehler, T.M. (2007) An energy balance concept for habitability. Astrobiology 7: 824-838.
    • (2007) Astrobiology , vol.7 , pp. 824-838
    • Hoehler, T.M.1
  • 33
    • 0028583232 scopus 로고
    • Field and laboratory studies of methane oxidation in an anoxic marine sediment: evidence for a methanogensulfate reducer consortium
    • Hoehler, T.M., Alperin, M.J., Albert, D.B., and Martens, C.S. (1994) Field and laboratory studies of methane oxidation in an anoxic marine sediment: evidence for a methanogensulfate reducer consortium. Global Biogeochem Cycles 8: 451-463.
    • (1994) Global Biogeochem Cycles , vol.8 , pp. 451-463
    • Hoehler, T.M.1    Alperin, M.J.2    Albert, D.B.3    Martens, C.S.4
  • 34
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon; a program to detect chimeric sequences in multiple sequence alignments
    • Huber, T., Faulkner, G., and Hugenholtz, P. (2004) Bellerophon; a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 35
    • 0035487318 scopus 로고    scopus 로고
    • Bohannan counting the uncountable: statistical approaches to estimating microbial diversity
    • Hughes, J.B., Hellmann, J.J., Ricketts, T.H., and Brendan, J.M. (2001) Bohannan counting the uncountable: statistical approaches to estimating microbial diversity. Appl Environ Microbiol 67: 4399-4406.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4399-4406
    • Hughes, J.B.1    Hellmann, J.J.2    Ricketts, T.H.3    Brendan, J.M.4
  • 36
    • 2142857748 scopus 로고    scopus 로고
    • Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk
    • Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., etal. (2003) Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk. Appl Environ Microbiol 69: 7224-7235.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 7224-7235
    • Inagaki, F.1    Suzuki, M.2    Takai, K.3    Oida, H.4    Sakamoto, T.5    Aoki, K.6
  • 37
    • 33644505436 scopus 로고    scopus 로고
    • Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific ocean margin
    • Inagaki, F., Nunoura, T., Nakagawa, S., Teske, A., Lever, M.A., Lauer, A., etal. (2006) Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific ocean margin. Proc Natl Acad Sci USA 103: 2815-2820.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 2815-2820
    • Inagaki, F.1    Nunoura, T.2    Nakagawa, S.3    Teske, A.4    Lever, M.A.5    Lauer, A.6
  • 40
    • 33947314286 scopus 로고    scopus 로고
    • Planktonic microbial communities associated with fracture-derived groundwater in a deep gold mine of South Africa
    • Lin, L.-H., Hall, J., Onstott, T.C., Gihring, T., Sherwood Lollar, B., Boice, E., etal. (2006) Planktonic microbial communities associated with fracture-derived groundwater in a deep gold mine of South Africa. Geomicrobiol J 23: 475-497.
    • (2006) Geomicrobiol J , vol.23 , pp. 475-497
    • Lin, L.-H.1    Hall, J.2    Onstott, T.C.3    Gihring, T.4    Sherwood Lollar, B.5    Boice, E.6
  • 41
    • 77649303058 scopus 로고    scopus 로고
    • Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep
    • Lloyd, K.G., Albert, D.B., Biddle, J.F., Chanton, J.P., Pizarro, O., and Teske, A. (2010) Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep. PLoS ONE 5: e8738.
    • (2010) PLoS ONE , vol.5
    • Lloyd, K.G.1    Albert, D.B.2    Biddle, J.F.3    Chanton, J.P.4    Pizarro, O.5    Teske, A.6
  • 42
    • 80052627969 scopus 로고    scopus 로고
    • Environmental evidence for net methane production and oxidation in putative ANaerobic MEthanotrophic (ANME) archaea
    • Lloyd, K.G., Alperin, M.J., and Teske, A. (2011) Environmental evidence for net methane production and oxidation in putative ANaerobic MEthanotrophic (ANME) archaea. Environ Microbiol 13: 2548-2564.
    • (2011) Environ Microbiol , vol.13 , pp. 2548-2564
    • Lloyd, K.G.1    Alperin, M.J.2    Teske, A.3
  • 43
    • 33744930596 scopus 로고    scopus 로고
    • Harnessing microbial activities for environmental cleanup
    • Löffler, F.E., and Edwards, E.A. (2006) Harnessing microbial activities for environmental cleanup. Curr Opin Biotechnol 17: 274-284.
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 274-284
    • Löffler, F.E.1    Edwards, E.A.2
  • 45
    • 0036856362 scopus 로고    scopus 로고
    • The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill
    • Luton, P.E., Wayne, J.M., Sharp, R.J., and Riley, P.W. (2002) The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiology 148: 3521-3530.
    • (2002) Microbiology , vol.148 , pp. 3521-3530
    • Luton, P.E.1    Wayne, J.M.2    Sharp, R.J.3    Riley, P.W.4
  • 46
    • 33847746181 scopus 로고    scopus 로고
    • Abiotic synthesis of organic compounds in deep-sea hydrothermal environments
    • McCollom, T.M., and Seewald, J.S. (2007) Abiotic synthesis of organic compounds in deep-sea hydrothermal environments. Chem Rev 107: 382-401.
    • (2007) Chem Rev , vol.107 , pp. 382-401
    • McCollom, T.M.1    Seewald, J.S.2
  • 47
    • 37249038458 scopus 로고    scopus 로고
    • Differences in carbon isotope discrimination of three variants of d-ribulose-1,5-bisphosphate carboxylase/oxygenase reflect differences in their catalytic mechanisms
    • McNevin, D.B., Badger, M.R., Whitney, S.M., von Caemmerer, S., Tcherkez, G.G., and Farquhar, G.D. (2007) Differences in carbon isotope discrimination of three variants of d-ribulose-1, 5-bisphosphate carboxylase/oxygenase reflect differences in their catalytic mechanisms. J Biol Chem 7: 36068-36076.
    • (2007) J Biol Chem , vol.7 , pp. 36068-36076
    • McNevin, D.B.1    Badger, M.R.2    Whitney, S.M.3    von Caemmerer, S.4    Tcherkez, G.G.5    Farquhar, G.D.6
  • 50
    • 0030968533 scopus 로고    scopus 로고
    • Phylogeny of Thiobacillus cuprinus and other mixotrophic thiobacilli: proposal for Thiomonas gen. nov.
    • Moreira, D., and Amils, R. (1997) Phylogeny of Thiobacillus cuprinus and other mixotrophic thiobacilli: proposal for Thiomonas gen. nov. Int J Syst Bacteriol 47: 522-528.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 522-528
    • Moreira, D.1    Amils, R.2
  • 51
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E.C., and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 52
    • 45149091572 scopus 로고    scopus 로고
    • Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance
    • Nakagawa, S., and Takai, K. (2008) Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance. FEMS Microb Ecol 65: 1-14.
    • (2008) FEMS Microb Ecol , vol.65 , pp. 1-14
    • Nakagawa, S.1    Takai, K.2
  • 53
    • 23944468503 scopus 로고    scopus 로고
    • Hydrogen-driven subsurface lithoautotrophic microbial ecosystems (SLiMEs): do they exist and why should we care?
    • Nealson, K.H., Inagaki, F., and Takai, K. (2005) Hydrogen-driven subsurface lithoautotrophic microbial ecosystems (SLiMEs): do they exist and why should we care? Trends Microbiol 13: 405-410.
    • (2005) Trends Microbiol , vol.13 , pp. 405-410
    • Nealson, K.H.1    Inagaki, F.2    Takai, K.3
  • 54
    • 16544379310 scopus 로고    scopus 로고
    • Distribution, diversity and activity of microorganisms in the hyperalkaline spring waters of Maqarin
    • Pedersen, K., Nilsson, E., Arlinger, J., Hallbeck, L., and O'Neill, A. (2004) Distribution, diversity and activity of microorganisms in the hyperalkaline spring waters of Maqarin. Extremophiles 8: 151-164.
    • (2004) Extremophiles , vol.8 , pp. 151-164
    • Pedersen, K.1    Nilsson, E.2    Arlinger, J.3    Hallbeck, L.4    O'Neill, A.5
  • 55
    • 33744745905 scopus 로고    scopus 로고
    • Marine microbial diversity: can it be determined?
    • Pedrós-Alió, C. (2006) Marine microbial diversity: can it be determined? Trends Microbiol 14: 257-263.
    • (2006) Trends Microbiol , vol.14 , pp. 257-263
    • Pedrós-Alió, C.1
  • 56
    • 68549090827 scopus 로고    scopus 로고
    • Potentially pathogenic bacteria in shower water and air of a stem cell transplant unit
    • Perkins, S.D., Mayfield, J., Fraser, V., and Angenent, L.T. (2009) Potentially pathogenic bacteria in shower water and air of a stem cell transplant unit. Appl Environ Microbiol 75: 5363-5372.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5363-5372
    • Perkins, S.D.1    Mayfield, J.2    Fraser, V.3    Angenent, L.T.4
  • 58
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E., Quast, C., Knittel, K., Fuchs, B., Ludwig, W., Peplies, J., and Glöckner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 59
    • 0029799968 scopus 로고    scopus 로고
    • The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov.
    • Rainey, F.A., Ward-Rainey, N., Kroppenstedt, R.M., and Stackebrandt, E. (1996) The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46: 1088-1092.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 1088-1092
    • Rainey, F.A.1    Ward-Rainey, N.2    Kroppenstedt, R.M.3    Stackebrandt, E.4
  • 60
    • 78349292586 scopus 로고    scopus 로고
    • Serpentinization as a source of energy at the origin of life
    • Russell, M.J., Hall, A.J., and Martin, W. (2010) Serpentinization as a source of energy at the origin of life. Geobiology 8: 355-371.
    • (2010) Geobiology , vol.8 , pp. 355-371
    • Russell, M.J.1    Hall, A.J.2    Martin, W.3
  • 61
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 62
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., etal. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 63
    • 0038654460 scopus 로고    scopus 로고
    • Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney
    • Schrenk, M.O., Kelley, D.S., Delaney, J.R., and Baross, J.A. (2003) Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney. Appl Environ Microbiol 69: 3580-3592.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3580-3592
    • Schrenk, M.O.1    Kelley, D.S.2    Delaney, J.R.3    Baross, J.A.4
  • 64
    • 4644245661 scopus 로고    scopus 로고
    • Low archaeal diversity linked to subseafloor geochemical processes at the Lost City hydrothermal field, Mid-Atlantic Ridge
    • Schrenk, M.O., Kelley, D.S., Bolton, S.A., and Baross, J.A. (2004) Low archaeal diversity linked to subseafloor geochemical processes at the Lost City hydrothermal field, Mid-Atlantic Ridge. Environ Microbiol 6: 1086-1095.
    • (2004) Environ Microbiol , vol.6 , pp. 1086-1095
    • Schrenk, M.O.1    Kelley, D.S.2    Bolton, S.A.3    Baross, J.A.4
  • 65
    • 33744789959 scopus 로고    scopus 로고
    • Serpentinization and its implications for life on the Early Earth and Mars
    • Schulte, M., Blake, D., Hoehler, T., and McCollom, T. (2006) Serpentinization and its implications for life on the Early Earth and Mars. Astrobiology 6: 364-376.
    • (2006) Astrobiology , vol.6 , pp. 364-376
    • Schulte, M.1    Blake, D.2    Hoehler, T.3    McCollom, T.4
  • 66
    • 33747492397 scopus 로고    scopus 로고
    • Molecular characterization of microbial communities in fault-bordered aquifers in the Miocene formation of northernmost Japan
    • Shimizu, S., Akiyama, M., Ishijima, Y., Hama, K., Kunimaru, T., and Naganuma, T. (2006) Molecular characterization of microbial communities in fault-bordered aquifers in the Miocene formation of northernmost Japan. Geobiology 4: 147-223.
    • (2006) Geobiology , vol.4 , pp. 147-223
    • Shimizu, S.1    Akiyama, M.2    Ishijima, Y.3    Hama, K.4    Kunimaru, T.5    Naganuma, T.6
  • 69
    • 33746079233 scopus 로고    scopus 로고
    • Stratified communities of active archaea in deep marine subsurface sediments
    • Sørensen, K.B., and Teske, A. (2006) Stratified communities of active archaea in deep marine subsurface sediments. Appl Environ Microbiol 72: 4596-4603.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4596-4603
    • Sørensen, K.B.1    Teske, A.2
  • 70
    • 0002969802 scopus 로고
    • A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons
    • Sørensen, T. (1948) A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons. Videnski Selskab Biologiske Skrifter 5: 1-34.
    • (1948) Videnski Selskab Biologiske Skrifter , vol.5 , pp. 1-34
    • Sørensen, T.1
  • 71
    • 43049156579 scopus 로고    scopus 로고
    • Dethiobacter alkaliphilus gen. nov. sp. nov., and Desulfurivibrio alkaliphilus gen. nov. sp. nov.: two novel representatives of reductive sulfur cycle from soda lakes
    • Sorokin, D.Y., Tourova, T.P., Mussmann, M., and Muyzer, G. (2008) Dethiobacter alkaliphilus gen. nov. sp. nov., and Desulfurivibrio alkaliphilus gen. nov. sp. nov.: two novel representatives of reductive sulfur cycle from soda lakes. Extremophiles 12: 431-439.
    • (2008) Extremophiles , vol.12 , pp. 431-439
    • Sorokin, D.Y.1    Tourova, T.P.2    Mussmann, M.3    Muyzer, G.4
  • 72
    • 37349069540 scopus 로고    scopus 로고
    • Function, structure, and evolution of the RuBisCO-like proteins and their RuBisCO homologs
    • Tabita, F.R., Hanson, T.E., Li, H., Satagopan, S., Singh, J., and Chan, S. (2007) Function, structure, and evolution of the RuBisCO-like proteins and their RuBisCO homologs. Microbiol Mol Biol Rev 71: 576-599.
    • (2007) Microbiol Mol Biol Rev , vol.71 , pp. 576-599
    • Tabita, F.R.1    Hanson, T.E.2    Li, H.3    Satagopan, S.4    Singh, J.5    Chan, S.6
  • 74
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 75
    • 10444276630 scopus 로고    scopus 로고
    • Bacterial diversity in a nonsaline alkaline environment: heterotrophic aerobic populations
    • Tiago, I., Chung, A.P., and Veríssimo, A. (2004) Bacterial diversity in a nonsaline alkaline environment: heterotrophic aerobic populations. Appl Environ Microbiol 70: 7378-7387.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 7378-7387
    • Tiago, I.1    Chung, A.P.2    Veríssimo, A.3
  • 76
    • 68949209844 scopus 로고    scopus 로고
    • A nested PCR approach for improved recovery of archaeal 16S rRNA gene fragments from freshwater samples
    • Vissers, E.W., Bodelier, P.L., Muyzer, G., and Laanbroek, H.J. (2009) A nested PCR approach for improved recovery of archaeal 16S rRNA gene fragments from freshwater samples. FEMS Microbiol Lett 298: 193-198.
    • (2009) FEMS Microbiol Lett , vol.298 , pp. 193-198
    • Vissers, E.W.1    Bodelier, P.L.2    Muyzer, G.3    Laanbroek, H.J.4
  • 77
    • 0024333565 scopus 로고
    • Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and 'Pseudomonas carboxydoflava') and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis)
    • Willems, A., Busse, J., Goor, M., Pot, B., Falsen, E., Jantzen, E., etal. (1989) Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and 'Pseudomonas carboxydoflava') and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int J Syst Bacteriol 39: 319-333.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 319-333
    • Willems, A.1    Busse, J.2    Goor, M.3    Pot, B.4    Falsen, E.5    Jantzen, E.6
  • 78
    • 78650290811 scopus 로고    scopus 로고
    • Understanding short-chain fatty acids accumulation enhanced in waste activated sludge alkaline fermentation: kinetics and microbiology
    • Zhang, P., Chen, Y., Zhou, Q., Zheng, X., Zhu, X., and Zhao, Y. (2010) Understanding short-chain fatty acids accumulation enhanced in waste activated sludge alkaline fermentation: kinetics and microbiology. Environ Sci Technol 44: 9343-9348.
    • (2010) Environ Sci Technol , vol.44 , pp. 9343-9348
    • Zhang, P.1    Chen, Y.2    Zhou, Q.3    Zheng, X.4    Zhu, X.5    Zhao, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.