-
1
-
-
0037385258
-
Related assemblages of sulphate-reducing bacteria associated with ultradeep gold mines of South Africa and deep basalt aquifers of Washington State
-
Baker BJ, Moser DP, MacGregor BJ, Fishbain S, Wagner M, Fry NK, Jackson B, Speolstra N, Loos S, Takai K, Lollar BS, Fredrickson J, Balkwill D, Onstott TC, Wimpee CF, Stahl DA (2003) Related assemblages of sulphate-reducing bacteria associated with ultradeep gold mines of South Africa and deep basalt aquifers of Washington State. Environmental Microbiology 5, 267-277.
-
(2003)
Environmental Microbiology
, vol.5
, pp. 267-277
-
-
Baker, B.J.1
Moser, D.P.2
MacGregor, B.J.3
Fishbain, S.4
Wagner, M.5
Fry, N.K.6
Jackson, B.7
Speolstra, N.8
Loos, S.9
Takai, K.10
Lollar, B.S.11
Fredrickson, J.12
Balkwill, D.13
Onstott, T.C.14
Wimpee, C.F.15
Stahl, D.A.16
-
2
-
-
0028343555
-
Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
-
Barns SM, Fundyga RE, Jeffries MW, Pace NR (1994) Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proceedings of the National Academy of Sciences of the United States of America 91, 1609-1613.
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, pp. 1609-1613
-
-
Barns, S.M.1
Fundyga, R.E.2
Jeffries, M.W.3
Pace, N.R.4
-
3
-
-
0031811165
-
Phylogenetic diversity of archaea and bacteria in a deep subsurface paleosol
-
Chandler DP, Brockman FJ, Bailey TJ, Fredrickson JK (1998) Phylogenetic diversity of archaea and bacteria in a deep subsurface paleosol. Microbial Ecology 36, 37-50.
-
(1998)
Microbial Ecology
, vol.36
, pp. 37-50
-
-
Chandler, D.P.1
Brockman, F.J.2
Bailey, T.J.3
Fredrickson, J.K.4
-
4
-
-
0033012295
-
Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil
-
Chin KJ, Lukow T, Conrad R (1999) Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil. Applied and Environmental Microbiology 65, 2341-2349.
-
(1999)
Applied and Environmental Microbiology
, vol.65
, pp. 2341-2349
-
-
Chin, K.J.1
Lukow, T.2
Conrad, R.3
-
5
-
-
0032189023
-
Microbial diversity in a hydrocarbon- and chlorinated-solvent- contaminated aquifer undergoing intrinsic bioremediation
-
Dojka MA, Hugenholtz P, Haack SK, Pace NR (1998) Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Applied and Environmental Microbiology 64, 3869-3877.
-
(1998)
Applied and Environmental Microbiology
, vol.64
, pp. 3869-3877
-
-
Dojka, M.A.1
Hugenholtz, P.2
Haack, S.K.3
Pace, N.R.4
-
6
-
-
0032888598
-
Novel 16S rRNA gene sequences retrieved from highly saline brine sediments of Kebrit Deep, Red Sea
-
Eder W, Ludwig W, Huber R (1999) Novel 16S rRNA gene sequences retrieved from highly saline brine sediments of Kebrit Deep, Red Sea. Archives of Microbiology 172, 213-218.
-
(1999)
Archives of Microbiology
, vol.172
, pp. 213-218
-
-
Eder, W.1
Ludwig, W.2
Huber, R.3
-
7
-
-
3242773894
-
Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the Hanford site, Washington state
-
Fredrickson JK, Zachara JM, Balkwill DL, Kennedy D, Li SM, Kostandarithes HM, Daly MJ, Romine MF, Brockman FJ (2004) Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the Hanford site, Washington state. Applied and Environmental Microbiology 70, 4230-4241.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 4230-4241
-
-
Fredrickson, J.K.1
Zachara, J.M.2
Balkwill, D.L.3
Kennedy, D.4
Li, S.M.5
Kostandarithes, H.M.6
Daly, M.J.7
Romine, M.F.8
Brockman, F.J.9
-
8
-
-
0023471392
-
The site of sedimentation of late neogene bedded siliceous rock in northern Hokkaido, Japan
-
Fukusawa H (1987) The site of sedimentation of late neogene bedded siliceous rock in northern Hokkaido, Japan. Journal of the Geological Society of Japan 93, 37-55.
-
(1987)
Journal of the Geological Society of Japan
, vol.93
, pp. 37-55
-
-
Fukusawa, H.1
-
9
-
-
0003132896
-
Enumeration and morphological characterization of bacteria indigenous to subsurface sediments
-
Ghiorse WC, Balkwill DL (1983) Enumeration and morphological characterization of bacteria indigenous to subsurface sediments. Developments in Industrial Microbiology 24, 213-224.
-
(1983)
Developments in Industrial Microbiology
, vol.24
, pp. 213-224
-
-
Ghiorse, W.C.1
Balkwill, D.L.2
-
10
-
-
16144362010
-
Crenarchaeota in low-temperature terrestrial environments
-
Hershberger KL, Barns SM, Reysenbach AL, Dawson SC, Pace NR (1996) Crenarchaeota in low-temperature terrestrial environments. Nature 384, 420.
-
(1996)
Nature
, vol.384
, pp. 420
-
-
Hershberger, K.L.1
Barns, S.M.2
Reysenbach, A.L.3
Dawson, S.C.4
Pace, N.R.5
-
11
-
-
0026455131
-
Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial clusters without DNA purification
-
Hiraishi A (1992) Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial clusters without DNA purification. Letters in Applied Microbiology 15, 210-213.
-
(1992)
Letters in Applied Microbiology
, vol.15
, pp. 210-213
-
-
Hiraishi, A.1
-
13
-
-
0000752502
-
The non-concept of species diversity: A critique and alternative parameters
-
Hurlbert SH (1971) The non-concept of species diversity: a critique and alternative parameters. Ecology 52, 577-586.
-
(1971)
Ecology
, vol.52
, pp. 577-586
-
-
Hurlbert, S.H.1
-
14
-
-
2142857748
-
Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of Okhotsk
-
Inagaki F, Suzuki M, Takai K, Oida H, Sakamoto T, Aoki K, Nealson KH, Horikoshi K (2003a) Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of Okhotsk. Applied and Environmental Microbiology 69, 7224-7235.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 7224-7235
-
-
Inagaki, F.1
Suzuki, M.2
Takai, K.3
Oida, H.4
Sakamoto, T.5
Aoki, K.6
Nealson, K.H.7
Horikoshi, K.8
-
16
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5, 150-163.
-
(2004)
Briefings in Bioinformatics
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
17
-
-
0001857117
-
16S/23S rRNA sequencing
-
(eds Stackebrandt E, Goodfellow M). John Wiley and Sons, New York
-
Lane DJ (1991) 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics (eds Stackebrandt E, Goodfellow M). John Wiley and Sons, New York, pp. 115-175.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
18
-
-
0347723719
-
Temporal shifts in the geochemistry and microbial community structure of an ultradeep mine borehole following isolation
-
Moser DP, Onstott TC, Fredrickson JK, Brockman FJ, Balkwill DL, Drake GR, Pfiffner SM, White DC, Takai K, Pratt LM, Fong J, Lollar BS, Slater G, Phelps TJ, Spoelstra N, Deflaun M, Southam G, Welty AT, Baker BJ, Hoek J (2003) Temporal shifts in the geochemistry and microbial community structure of an ultradeep mine borehole following isolation. Geomicrobiology Journal 20, 517-548.
-
(2003)
Geomicrobiology Journal
, vol.20
, pp. 517-548
-
-
Moser, D.P.1
Onstott, T.C.2
Fredrickson, J.K.3
Brockman, F.J.4
Balkwill, D.L.5
Drake, G.R.6
Pfiffner, S.M.7
White, D.C.8
Takai, K.9
Pratt, L.M.10
Fong, J.11
Lollar, B.S.12
Slater, G.13
Phelps, T.J.14
Spoelstra, N.15
Deflaun, M.16
Southam, G.17
Welty, A.T.18
Baker, B.J.19
Hoek, J.20
more..
-
19
-
-
29144452882
-
Desulfotomaculum and Methanobacterium spp. dominated a 4- to 5-kilometer-deep fault
-
Moser DP, Gihring TM, Brockman FJ, Fredrickson JK, Balkwill DL, Dollhopf ME, Lollar BS, Pratt LM, Boice E, Southam G, Wanger G, Baker BJ, Pfiffner SM, Lin LH, Onstott TC (2005) Desulfotomaculum and Methanobacterium spp. dominated a 4- to 5-kilometer-deep fault. Applied and Environmental Microbiology 71, 8773-8783.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 8773-8783
-
-
Moser, D.P.1
Gihring, T.M.2
Brockman, F.J.3
Fredrickson, J.K.4
Balkwill, D.L.5
Dollhopf, M.E.6
Lollar, B.S.7
Pratt, L.M.8
Boice, E.9
Southam, G.10
Wanger, G.11
Baker, B.J.12
Pfiffner, S.M.13
Lin, L.H.14
Onstott, T.C.15
-
20
-
-
10744223616
-
Indigenous and contaminant microbes in ultradeep mines
-
Onstott TC, Moser DP, Pfiffner SM, Fredrickson JK, Brockman FJ, Phelps TJ, White DC, Peacock A, Balkwill D, Hoover R, Krumholz LR, Borscik M, Kieft TL, Wilson R (2003) Indigenous and contaminant microbes in ultradeep mines. Environmental. Microbiology 5, 1168-1191.
-
(2003)
Environmental. Microbiology
, vol.5
, pp. 1168-1191
-
-
Onstott, T.C.1
Moser, D.P.2
Pfiffner, S.M.3
Fredrickson, J.K.4
Brockman, F.J.5
Phelps, T.J.6
White, D.C.7
Peacock, A.8
Balkwill, D.9
Hoover, R.10
Krumholz, L.R.11
Borscik, M.12
Kieft, T.L.13
Wilson, R.14
-
21
-
-
0033952662
-
Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs
-
Orphan VJ, Taylor LT, Hafenbradl D, Delong EF (2000) Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs. Applied and Environmental Microbiology 66, 700-711.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 700-711
-
-
Orphan, V.J.1
Taylor, L.T.2
Hafenbradl, D.3
Delong, E.F.4
-
22
-
-
0030203863
-
TREEVIEW: An application to display phylogenetic trees on personal computers
-
Page RD (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357-358.
-
(1996)
Computer Applications in the Biosciences
, vol.12
, pp. 357-358
-
-
Page, R.D.1
-
23
-
-
0028162155
-
Deep bacterial biosphere in Pacific ocean sediments
-
Parkes RJ, Cragg BA, Bale SJ, Getliff JM, Goodman K, Rochelle PA, Fry JC, Weightman AJ, Harvey SM (1994) Deep bacterial biosphere in Pacific ocean sediments. Nature 371, 410-413.
-
(1994)
Nature
, vol.371
, pp. 410-413
-
-
Parkes, R.J.1
Cragg, B.A.2
Bale, S.J.3
Getliff, J.M.4
Goodman, K.5
Rochelle, P.A.6
Fry, J.C.7
Weightman, A.J.8
Harvey, S.M.9
-
24
-
-
0347794946
-
Recent studies on bacterial populations and processes in subseafloor sediments: A review
-
Parkes RJ, Cragg BA, Wellsbury P (2000) Recent studies on bacterial populations and processes in subseafloor sediments: a review. Hydrogeology Journal 8, 11-28.
-
(2000)
Hydrogeology Journal
, vol.8
, pp. 11-28
-
-
Parkes, R.J.1
Cragg, B.A.2
Wellsbury, P.3
-
25
-
-
0027844149
-
The deep subterranean biosphere
-
Pedersen K (1993) The deep subterranean biosphere. Earth-Science Reviews 34, 243-260.
-
(1993)
Earth-Science Reviews
, vol.34
, pp. 243-260
-
-
Pedersen, K.1
-
26
-
-
0008685243
-
Diversity and activity of microorganisms in deep igneous rock aquifers of the Fennoscandian Shield
-
(eds Fredrickson JK, Fletcher M). John Wiley and Sons, New York
-
Pedersen K (2001) Diversity and activity of microorganisms in deep igneous rock aquifers of the Fennoscandian Shield. In Subsurface Microbiology and Biogeochemistry (eds Fredrickson JK, Fletcher M). John Wiley and Sons, New York, pp. 97-139.
-
(2001)
Subsurface Microbiology and Biogeochemistry
, pp. 97-139
-
-
Pedersen, K.1
-
27
-
-
0030164089
-
Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing
-
Pedersen K, Arlinger J, Hallbeck L, Pettersson C (1996a) Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing. Molecular Ecology 5, 427-436.
-
(1996)
Molecular Ecology
, vol.5
, pp. 427-436
-
-
Pedersen, K.1
Arlinger, J.2
Hallbeck, L.3
Pettersson, C.4
-
28
-
-
0029973821
-
16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Äspö hard rock laboratory, Sweden
-
Pedersen K, Arlinger J, Ekendahl S, Hallbeck L (1996b) 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Äspö hard rock laboratory, Sweden. FEMS Microbiology Ecology 19, 249-262.
-
(1996)
FEMS Microbiology Ecology
, vol.19
, pp. 249-262
-
-
Pedersen, K.1
Arlinger, J.2
Ekendahl, S.3
Hallbeck, L.4
-
29
-
-
0025178066
-
Distribution and activity of bacteria in deep granitic groundwaters of southeastern Sweden
-
Pedersen K, Ekendahl S (1990) Distribution and activity of bacteria in deep granitic groundwaters of southeastern Sweden. Microbial Ecology 20, 37-52.
-
(1990)
Microbial Ecology
, vol.20
, pp. 37-52
-
-
Pedersen, K.1
Ekendahl, S.2
-
30
-
-
0030826250
-
Investigation of the potential for microbial contamination of deep granitic aquifers during drilling using 16S rRNA gene sequencing and culturing methods
-
Pedersen K, Hallbeck L, Arlinger J, Erlandson AC, Jahromi N (1997) Investigation of the potential for microbial contamination of deep granitic aquifers during drilling using 16S rRNA gene sequencing and culturing methods. Journal of Microbiological Methods 30, 179-192.
-
(1997)
Journal of Microbiological Methods
, vol.30
, pp. 179-192
-
-
Pedersen, K.1
Hallbeck, L.2
Arlinger, J.3
Erlandson, A.C.4
Jahromi, N.5
-
31
-
-
0036188405
-
Comparison of the molecular diversity of the methanogenic community at the brackish and marine ends of a UK estuary
-
Pudry KJ, Munson MA, Nedwell DB, Embley TM (2002) Comparison of the molecular diversity of the methanogenic community at the brackish and marine ends of a UK estuary. FEMS Microbiology Ecology 39, 17-21.
-
(2002)
FEMS Microbiology Ecology
, vol.39
, pp. 17-21
-
-
Pudry, K.J.1
Munson, M.A.2
Nedwell, D.B.3
Embley, T.M.4
-
32
-
-
0036330519
-
Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin
-
Reed DW, Fujita Y, Delwiche ME, Blackwelder DB, Sheridan PP, Uchida T, Colwell FS (2002) Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin. Applied and Environmental Microbiology 68, 3759-3770.
-
(2002)
Applied and Environmental Microbiology
, vol.68
, pp. 3759-3770
-
-
Reed, D.W.1
Fujita, Y.2
Delwiche, M.E.3
Blackwelder, D.B.4
Sheridan, P.P.5
Uchida, T.6
Colwell, F.S.7
-
33
-
-
0023375195
-
The neighbor-joining method: A new method for constructing phylogenetic tree
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for constructing phylogenetic tree. Molecular Biology and Evolution 4, 406-425.
-
(1987)
Molecular Biology and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
34
-
-
0028972702
-
Lithoautotrophic microbial ecosystems in deep basalt aquifers
-
Stevens TO, McKinley JP (1995) Lithoautotrophic microbial ecosystems in deep basalt aquifers. Science 270, 450-454.
-
(1995)
Science
, vol.270
, pp. 450-454
-
-
Stevens, T.O.1
McKinley, J.P.2
-
35
-
-
0001945992
-
Bacteria associated with deep, alkaline, anaerobic groundwaters in southeast Washington
-
Stevens TO, McKinley JP, Fredrickson JK (1993) Bacteria associated with deep, alkaline, anaerobic groundwaters in southeast Washington. Microbial Ecology 25, 35-50.
-
(1993)
Microbial Ecology
, vol.25
, pp. 35-50
-
-
Stevens, T.O.1
McKinley, J.P.2
Fredrickson, J.K.3
-
36
-
-
25144453039
-
Evidence for aceticlastic methanogenesis in the presence of sulfate in a gas condensate-contaminated aquifer
-
Struchtemeyer CG, Elshahed MS, Duncan KE, McInerney MJ (2005) Evidence for aceticlastic methanogenesis in the presence of sulfate in a gas condensate-contaminated aquifer. Applied and Environmental Microbiology 71, 5348-5353.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 5348-5353
-
-
Struchtemeyer, C.G.1
Elshahed, M.S.2
Duncan, K.E.3
McInerney, M.J.4
-
37
-
-
0344035670
-
Genetic diversity of archaea in deep-sea hydrothermal vent environments
-
Takai K, Horikoshi K (1999) Genetic diversity of archaea in deep-sea hydrothermal vent environments. Genetics 152, 1285-1297.
-
(1999)
Genetics
, vol.152
, pp. 1285-1297
-
-
Takai, K.1
Horikoshi, K.2
-
38
-
-
0037383728
-
Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock
-
Takai K, Mormile MR, McKinley JP, Brockman FJ, Holben WE, Kovacik WP Jr, Fredrickson JK (2003) Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock. Environmental Microbiology 5, 309-320.
-
(2003)
Environmental Microbiology
, vol.5
, pp. 309-320
-
-
Takai, K.1
Mormile, M.R.2
McKinley, J.P.3
Brockman, F.J.4
Holben, W.E.5
Kovacik Jr., W.P.6
Fredrickson, J.K.7
-
39
-
-
0035656111
-
Archaeal diversity in waters from deep South African gold mines
-
Takai K, Moser DP, DeFlaun M, Onstott TC, Fredrickson JK (2001) Archaeal diversity in waters from deep South African gold mines. Applied and Environmental Microbiology 67, 5750-5760.
-
(2001)
Applied and Environmental Microbiology
, vol.67
, pp. 5750-5760
-
-
Takai, K.1
Moser, D.P.2
DeFlaun, M.3
Onstott, T.C.4
Fredrickson, J.K.5
-
40
-
-
0031904685
-
Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants
-
Tanner MA, Goebel BM, Dojka MA, Pace NR (1998) Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants. Applied and Environmental Microbiology 64, 3110-3113.
-
(1998)
Applied and Environmental Microbiology
, vol.64
, pp. 3110-3113
-
-
Tanner, M.A.1
Goebel, B.M.2
Dojka, M.A.3
Pace, N.R.4
-
41
-
-
0027968068
-
Clustal W: Improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
42
-
-
0036322440
-
Diversity, abundance, and activity of archaeal populations in oil-contaminated groundwater accumulated at the bottom of an underground crude oil storage cavity
-
Watanabe K, Kodama Y, Hamamura N, Kaku N (2002a) Diversity, abundance, and activity of archaeal populations in oil-contaminated groundwater accumulated at the bottom of an underground crude oil storage cavity. Applied and Environmental Microbiology 68, 3899-3907.
-
(2002)
Applied and Environmental Microbiology
, vol.68
, pp. 3899-3907
-
-
Watanabe, K.1
Kodama, Y.2
Hamamura, N.3
Kaku, N.4
-
43
-
-
19044366366
-
Diversity and abundance of bacteria in an underground oil-storage cavity
-
Watanabe K, Kodama Y, Kaku N (2002b) Diversity and abundance of bacteria in an underground oil-storage cavity. BMC Microbiology 2, 23.
-
(2002)
BMC Microbiology
, vol.2
, pp. 23
-
-
Watanabe, K.1
Kodama, Y.2
Kaku, N.3
-
45
-
-
33747506200
-
-
Horonobe Underground Research Center, Geotechnical Science and Engineering Group Reports. JNC JT5400 2005-2004. Japan Nuclear Cycle Development Institute Hokkaido, Japan
-
Yamamoto T, Shimo M, Fujiwara Y, Hattori H, Nago M, Tadokoro T, Nakagaki S (2004) HDB-6 Borehole Investigations in the Horonobe Underground Research Program. Horonobe Underground Research Center, Geotechnical Science and Engineering Group Reports. JNC JT5400 2005-2004. Japan Nuclear Cycle Development Institute Hokkaido, Japan.
-
(2004)
HDB-6 Borehole Investigations in the Horonobe Underground Research Program
-
-
Yamamoto, T.1
Shimo, M.2
Fujiwara, Y.3
Hattori, H.4
Nago, M.5
Tadokoro, T.6
Nakagaki, S.7
|