메뉴 건너뛰기




Volumn 32, Issue 2, 2009, Pages 140-150

Distribution and diversity of autotrophic bacteria in groundwater systems based on the analysis of RubisCO genotypes

Author keywords

Chemolithoautotrophic bacteria; Groundwater systems; RubisCO genes

Indexed keywords

BACTERIAL DNA; GROUND WATER; RIBULOSEBISPHOSPHATE CARBOXYLASE;

EID: 59649083173     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2008.11.005     Document Type: Article
Times cited : (60)

References (39)
  • 2
    • 0038681416 scopus 로고    scopus 로고
    • Diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes from groundwater and aquifer microorganisms
    • Alfreider A., Vogt C., Hoffmann D., and Babel W. Diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes from groundwater and aquifer microorganisms. Microb. Ecol. 45 (2003) 317-328
    • (2003) Microb. Ecol. , vol.45 , pp. 317-328
    • Alfreider, A.1    Vogt, C.2    Hoffmann, D.3    Babel, W.4
  • 3
    • 0033749402 scopus 로고    scopus 로고
    • Organic carbon retention and metabolism in a near-stream groundwater ecosystem
    • Baker M.A., Valett H.M., and Dahm C.N. Organic carbon retention and metabolism in a near-stream groundwater ecosystem. Ecology 81 (2000) 3133-3148
    • (2000) Ecology , vol.81 , pp. 3133-3148
    • Baker, M.A.1    Valett, H.M.2    Dahm, C.N.3
  • 4
    • 37249052742 scopus 로고    scopus 로고
    • A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in archaea
    • Berg I.A., Kockelkorn D., Buckel W., and Fuchs G. A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in archaea. Science 318 (2007) 1782-1786
    • (2007) Science , vol.318 , pp. 1782-1786
    • Berg, I.A.1    Kockelkorn, D.2    Buckel, W.3    Fuchs, G.4
  • 5
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids
    • Delwiche C.F., and Palmer J.D. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol. Biol. Evol. 13 (1996) 873-882
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 873-882
    • Delwiche, C.F.1    Palmer, J.D.2
  • 6
    • 49249144575 scopus 로고
    • The most abundant protein in the world
    • Ellis R.J. The most abundant protein in the world. Trends Biochem. Sci. 4 (1979) 241-244
    • (1979) Trends Biochem. Sci. , vol.4 , pp. 241-244
    • Ellis, R.J.1
  • 7
    • 0035318376 scopus 로고    scopus 로고
    • Phylogenetic diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit genes from deep-sea microorganisms
    • Elsaied H., and Naganuma T. Phylogenetic diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit genes from deep-sea microorganisms. Appl. Environ. Microbiol. 67 (2001) 1751-1765
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1751-1765
    • Elsaied, H.1    Naganuma, T.2
  • 8
    • 33846137706 scopus 로고    scopus 로고
    • Composition of archaeal, bacterial, and eukaryal RuBisCO genotypes in three Western Pacific arc hydrothermal vent systems
    • Elsaied H., Kimura H., and Naganuma T. Composition of archaeal, bacterial, and eukaryal RuBisCO genotypes in three Western Pacific arc hydrothermal vent systems. Extremophiles 11 (2007) 191-202
    • (2007) Extremophiles , vol.11 , pp. 191-202
    • Elsaied, H.1    Kimura, H.2    Naganuma, T.3
  • 9
    • 4544272017 scopus 로고    scopus 로고
    • Modified pathway to synthesize ribulose 1,5-bisphosphate in methanogenic archaea
    • Finn M.W., and Tabita F.R. Modified pathway to synthesize ribulose 1,5-bisphosphate in methanogenic archaea. J. Bacteriol. 186 (2004) 6360-6366
    • (2004) J. Bacteriol. , vol.186 , pp. 6360-6366
    • Finn, M.W.1    Tabita, F.R.2
  • 10
    • 85023819181 scopus 로고    scopus 로고
    • Geomicrobial processes and biodiversity in the deep terrestrial subsurface
    • Fredrickson J.K., and Balkwill D.L. Geomicrobial processes and biodiversity in the deep terrestrial subsurface. Geomicrobiol. J. 23 (2006) 345-356
    • (2006) Geomicrobiol. J. , vol.23 , pp. 345-356
    • Fredrickson, J.K.1    Balkwill, D.L.2
  • 11
    • 2942532191 scopus 로고    scopus 로고
    • Distribution of RuBisCO genotypes along a redox gradient in Mono Lake California
    • Giri B.J., Bano N., and Hollibaugh J. Distribution of RuBisCO genotypes along a redox gradient in Mono Lake California. Appl. Environ. Microbiol. 70 (2004) 3443-3448
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3443-3448
    • Giri, B.J.1    Bano, N.2    Hollibaugh, J.3
  • 12
    • 33749483371 scopus 로고    scopus 로고
    • Microbial biocenoses in pristine aquifers and an assessment of investigative methods
    • Goldscheider N., Hunkeler D., and Rossi P. Microbial biocenoses in pristine aquifers and an assessment of investigative methods. Hydrogeol. J. 14 (2006) 926-941
    • (2006) Hydrogeol. J. , vol.14 , pp. 926-941
    • Goldscheider, N.1    Hunkeler, D.2    Rossi, P.3
  • 13
    • 0026616685 scopus 로고
    • Biodegradability of dissolved organic carbon in groundwater from an unconfined aquifer
    • Gron C., Torslov J., Albrechtsen H.J., and Jensen H.M. Biodegradability of dissolved organic carbon in groundwater from an unconfined aquifer. Sci. Tot. Environ. 117/118 (1992) 241-251
    • (1992) Sci. Tot. Environ. , vol.117-118 , pp. 241-251
    • Gron, C.1    Torslov, J.2    Albrechtsen, H.J.3    Jensen, H.M.4
  • 15
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
    • (2004) Brief. Bioinform. , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 16
    • 0034530879 scopus 로고    scopus 로고
    • Distribution and biogeochemical importance of bacterial populations in a thick clay-rich aquitard system
    • Lawrence J.R., Hendry M.J., Wassenaar L.I., Wolfaardt G.M., Germida J.J., and Greer C.W. Distribution and biogeochemical importance of bacterial populations in a thick clay-rich aquitard system. Microb. Ecol. 40 (2000) 273-291
    • (2000) Microb. Ecol. , vol.40 , pp. 273-291
    • Lawrence, J.R.1    Hendry, M.J.2    Wassenaar, L.I.3    Wolfaardt, G.M.4    Germida, J.J.5    Greer, C.W.6
  • 17
    • 33750332574 scopus 로고    scopus 로고
    • Long-term sustainability of a high-energy, low-diversity crustal biome
    • Lin L.H., Wang P.L., Rumble D., Lippmann-Pipke J., Boice E., Pratt L.M., et al. Long-term sustainability of a high-energy, low-diversity crustal biome. Science 314 (2006) 479-482
    • (2006) Science , vol.314 , pp. 479-482
    • Lin, L.H.1    Wang, P.L.2    Rumble, D.3    Lippmann-Pipke, J.4    Boice, E.5    Pratt, L.M.6
  • 18
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C., and Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71 (2005) 8228-8235
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 19
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C., Hamady M., and Knight R. UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinform. 7 (2006) 371-384
    • (2006) BMC Bioinform. , vol.7 , pp. 371-384
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 20
    • 33747370883 scopus 로고    scopus 로고
    • Determination of naturally occurring MTBE biodegradation by analysing metabolites and biodegradation by-products
    • Martienssen M., Fabritius H., Kukla S., Balcke G.U., Hasselwander E., and Schirmer M. Determination of naturally occurring MTBE biodegradation by analysing metabolites and biodegradation by-products. J. Cont. Hydrol. 87 (2004) 37-53
    • (2004) J. Cont. Hydrol. , vol.87 , pp. 37-53
    • Martienssen, M.1    Fabritius, H.2    Kukla, S.3    Balcke, G.U.4    Hasselwander, E.5    Schirmer, M.6
  • 21
    • 3242876311 scopus 로고    scopus 로고
    • BLAST: at the core of a powerful and diverse set of sequence analysis tools
    • McGinnis S., and Madden T.L. BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucl. Acids Res. 32 (2004) W20-W25
    • (2004) Nucl. Acids Res. , vol.32
    • McGinnis, S.1    Madden, T.L.2
  • 22
    • 0021925630 scopus 로고
    • Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals
    • Mergeay M., Nies N., Schlegel H.G., Gerits J., Charles P., and Van Gijsegem F. Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals. J. Bacteriol. 162 (1985) 328-334
    • (1985) J. Bacteriol. , vol.162 , pp. 328-334
    • Mergeay, M.1    Nies, N.2    Schlegel, H.G.3    Gerits, J.4    Charles, P.5    Van Gijsegem, F.6
  • 23
    • 59649129068 scopus 로고    scopus 로고
    • Biodegradability of DOC and metabolic response of heterotrophic bacteria in groundwater
    • Mindl B., Griebler C., Wirth N., and Starry O. Biodegradability of DOC and metabolic response of heterotrophic bacteria in groundwater. Verh. Internat. Verein. Limnol. 27 (2000) 453-459
    • (2000) Verh. Internat. Verein. Limnol. , vol.27 , pp. 453-459
    • Mindl, B.1    Griebler, C.2    Wirth, N.3    Starry, O.4
  • 24
    • 34547636898 scopus 로고    scopus 로고
    • New roads lead to Rubisco in archaebacteria
    • Mueller-Cajar O., and Badger M.R. New roads lead to Rubisco in archaebacteria. Bioessays 29 (2007) 722-724
    • (2007) Bioessays , vol.29 , pp. 722-724
    • Mueller-Cajar, O.1    Badger, M.R.2
  • 25
    • 2942608404 scopus 로고    scopus 로고
    • Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase
    • Nanba K., King G.M., and Dunfield K. Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase. Appl. Environ. Microbiol. 70 (2004) 2245-2253
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2245-2253
    • Nanba, K.1    King, G.M.2    Dunfield, K.3
  • 26
    • 59649096894 scopus 로고    scopus 로고
    • M. Nedelkova, Microbial diversity in ground water at the deep-well monitoring site S15 of the radioactive waste depository Tomsk-7, Siberia, Russia, PhD Thesis, Technical University Bergakademie Freiberg, Freiberg, Germany, 2005.
    • M. Nedelkova, Microbial diversity in ground water at the deep-well monitoring site S15 of the radioactive waste depository Tomsk-7, Siberia, Russia, PhD Thesis, Technical University Bergakademie Freiberg, Freiberg, Germany, 2005.
  • 27
    • 33947195903 scopus 로고    scopus 로고
    • Disparate distributions of chemolithotrophs containing form IA or IC large subunit genes for ribulose-1,5-bisphosphate carboxylase/oxygenase in intertidal marine and littoral lake sediments
    • Nigro L.M., and King G.M. Disparate distributions of chemolithotrophs containing form IA or IC large subunit genes for ribulose-1,5-bisphosphate carboxylase/oxygenase in intertidal marine and littoral lake sediments. FEMS Microbiol. Ecol. 60 (2007) 113-125
    • (2007) FEMS Microbiol. Ecol. , vol.60 , pp. 113-125
    • Nigro, L.M.1    King, G.M.2
  • 28
    • 0034175957 scopus 로고    scopus 로고
    • Exploration of deep intraterrestrial microbial life: current perspectives
    • Pedersen K. Exploration of deep intraterrestrial microbial life: current perspectives. FEMS Microbiol. Lett. 185 (2000) 9-16
    • (2000) FEMS Microbiol. Lett. , vol.185 , pp. 9-16
    • Pedersen, K.1
  • 30
    • 12244285672 scopus 로고    scopus 로고
    • Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils
    • Selesi D., Schmid M., and Hartmann A. Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils. Appl. Environ. Microbiol. 77 (2005) 175-184
    • (2005) Appl. Environ. Microbiol. , vol.77 , pp. 175-184
    • Selesi, D.1    Schmid, M.2    Hartmann, A.3
  • 31
    • 0032840522 scopus 로고    scopus 로고
    • Microbial ribulose bisphosphate carboxylase/oxygenase: a different perspective
    • Tabita F.R. Microbial ribulose bisphosphate carboxylase/oxygenase: a different perspective. Photosynth. Res. 60 (1999) 1-28
    • (1999) Photosynth. Res. , vol.60 , pp. 1-28
    • Tabita, F.R.1
  • 32
    • 3042723377 scopus 로고    scopus 로고
    • Research on carbon dioxide fixation in photosynthetic microorganisms (1971-present)
    • Tabita F.R. Research on carbon dioxide fixation in photosynthetic microorganisms (1971-present). Photosynth. Res. 80 (2004) 315-332
    • (2004) Photosynth. Res. , vol.80 , pp. 315-332
    • Tabita, F.R.1
  • 33
    • 37349069540 scopus 로고    scopus 로고
    • Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs
    • Tabita F.R., Hanson T.E., Li H., Satagopan S., Singh J., and Chan S. Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs. Microbiol. Mol. Biol. Rev. 71 (2007) 576-599
    • (2007) Microbiol. Mol. Biol. Rev. , vol.71 , pp. 576-599
    • Tabita, F.R.1    Hanson, T.E.2    Li, H.3    Satagopan, S.4    Singh, J.5    Chan, S.6
  • 34
    • 29144519908 scopus 로고    scopus 로고
    • Diversity and structure of bacterial chemolithotrophic communities in pine forest and agroecosystem soils
    • Tolli J., and King G.M. Diversity and structure of bacterial chemolithotrophic communities in pine forest and agroecosystem soils. Appl. Environ. Microbiol. 71 (2005) 8411-8418
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8411-8418
    • Tolli, J.1    King, G.M.2
  • 35
    • 33744830319 scopus 로고    scopus 로고
    • 2-dominated deep hypersaline anoxic basin discovery
    • 2-dominated deep hypersaline anoxic basin discovery. FEMS Microbiol. Lett. 259 (2006) 326-331
    • (2006) FEMS Microbiol. Lett. , vol.259 , pp. 326-331
    • van der Wielen, P.W.J.J.1
  • 36
    • 0003347708 scopus 로고    scopus 로고
    • Two pilot plant reactors designed for the in situ bioremediation of chlorobenzene-contaminated ground water: hydrogeological and chemical characteristics and bacterial consortia
    • Vogt C., Alfreider A., Lorbeer H., Ahlheim J., Feist B., Böhme O., Weiss H., Babel W., and Wünsche L. Two pilot plant reactors designed for the in situ bioremediation of chlorobenzene-contaminated ground water: hydrogeological and chemical characteristics and bacterial consortia. Water Air Soil Pollut. Focus 2 (2002) 161-170
    • (2002) Water Air Soil Pollut. Focus , vol.2 , pp. 161-170
    • Vogt, C.1    Alfreider, A.2    Lorbeer, H.3    Ahlheim, J.4    Feist, B.5    Böhme, O.6    Weiss, H.7    Babel, W.8    Wünsche, L.9
  • 37
    • 0031024440 scopus 로고    scopus 로고
    • Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase: a molecule for phylogenetic and enzymological investigation
    • Watson G.M., and Tabita F.R. Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase: a molecule for phylogenetic and enzymological investigation. FEMS Microbiol. Lett. 146 (1997) 13-22
    • (1997) FEMS Microbiol. Lett. , vol.146 , pp. 13-22
    • Watson, G.M.1    Tabita, F.R.2
  • 39
    • 4344718419 scopus 로고    scopus 로고
    • 2-responsive expression and gene organization of three ribulose-1,5-bisphosphate carboxylase/oxygenase enzymes and carboxysomes in Hydrogenovibrio marinus strain MH-110
    • 2-responsive expression and gene organization of three ribulose-1,5-bisphosphate carboxylase/oxygenase enzymes and carboxysomes in Hydrogenovibrio marinus strain MH-110. J. Bacteriol. 186 (2004) 5685-5691
    • (2004) J. Bacteriol. , vol.186 , pp. 5685-5691
    • Yoshizawa, Y.1    Toyoda, K.2    Arai, H.3    Ishii, M.4    Igarashi, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.