-
1
-
-
34248191668
-
The microbial community structure in petroleum-contaminated sediments corresponds to geophysical signatures
-
Allen, J. P., Atekwana, E. A., Atekwana, E. A., Duris, J. W., Werkema, D. D. and Rossbach, S. (2007) The microbial community structure in petroleum-contaminated sediments corresponds to geophysical signatures. Appl Environ Microbiol, 73, pp. 2860-2870.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2860-2870
-
-
Allen, J.P.1
Atekwana, E.A.2
Atekwana, E.A.3
Duris, J.W.4
Werkema, D.D.5
Rossbach, S.6
-
2
-
-
33748799671
-
New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras
-
Ashelford, K. E., Chuzhanova, N. A., Fry, J. C., Jones, A. J. and Weightman, A. J. (2006) New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microbiol, 72, pp. 5734-5741.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5734-5741
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
3
-
-
0000411498
-
Vertical and horizontal variations in the physiological diversity of the aerobic chemoheterotrophic bacterial microflora in deep southeast coastal-plain subsurface Sediments
-
Balkwill, D. L., Fredrickson, J. K. and Thomas, J. M. (1989) Vertical and horizontal variations in the physiological diversity of the aerobic chemoheterotrophic bacterial microflora in deep southeast coastal-plain subsurface Sediments. Appl Environ Microbiol, 55, pp. 1058-1065.
-
(1989)
Appl Environ Microbiol
, vol.55
, pp. 1058-1065
-
-
Balkwill, D.L.1
Fredrickson, J.K.2
Thomas, J.M.3
-
4
-
-
0032963409
-
Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
-
Barns, S. M., Takala, S. L. and Kuske, C. R. (1999) Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl Environ Microbiol, 65, pp. 1731-1737.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 1731-1737
-
-
Barns, S.M.1
Takala, S.L.2
Kuske, C.R.3
-
5
-
-
34547513507
-
Phylogenetic and physiological diversity of cultured deep-biosphere bacteria from equatorial Pacific Ocean and Peru Margin sediments
-
Batzke, A., Engelen, B., Sass, H. and Cypionka, H. (2007) Phylogenetic and physiological diversity of cultured deep-biosphere bacteria from equatorial Pacific Ocean and Peru Margin sediments. Geomicrobiol J, 24, pp. 261-273.
-
(2007)
Geomicrobiol J
, vol.24
, pp. 261-273
-
-
Batzke, A.1
Engelen, B.2
Sass, H.3
Cypionka, H.4
-
6
-
-
33644821142
-
Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru
-
Biddle, J. F., Lipp, J. S., Lever, M. A., Lloyd, K. G., Sorensen, K. B. Anderson, R. et al. (2006) Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proc Nat Acad Sci USA, 103, pp. 3846-3851.
-
(2006)
Proc Nat Acad Sci USA
, vol.103
, pp. 3846-3851
-
-
Biddle, J.F.1
Lipp, J.S.2
Lever, M.A.3
Lloyd, K.G.4
Sorensen, K.B.5
Anderson, R.6
-
7
-
-
0032798291
-
Localized sulfate-reducing zones in a coastal plain aquifer
-
Brown, C. J., Coates, J. D. and Schoonen, M AA (1999) Localized sulfate-reducing zones in a coastal plain aquifer. Ground Water, 37, pp. 505-516.
-
(1999)
Ground Water
, vol.37
, pp. 505-516
-
-
Brown, C.J.1
Coates, J.D.2
Schoonen, M.A.A.3
-
8
-
-
33646827488
-
The versatile epsilon-proteobacteria: Key players in sulphidic habitats
-
Campbell, B. J., Engel, A. S., Porter, M. L. and Takai, K. (2006) The versatile epsilon-proteobacteria: Key players in sulphidic habitats. Nat Rev Microbiol, 4, pp. 458-468.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 458-468
-
-
Campbell, B.J.1
Engel, A.S.2
Porter, M.L.3
Takai, K.4
-
9
-
-
0030738777
-
A molecular comparison of culturable aerobic heterotrophic bacteria and 16S rDNA clones derived from a deep subsurface sediment
-
Chandler, D. P., Li, S. M., Spadoni, C. M., Drake, G. R., Balkwill, D. L., Fredrickson, J. K. and Brockman, F. J. (1997) A molecular comparison of culturable aerobic heterotrophic bacteria and 16S rDNA clones derived from a deep subsurface sediment. FEMS Microbiol Ecol, 23, pp. 131-144.
-
(1997)
FEMS Microbiol Ecol
, vol.23
, pp. 131-144
-
-
Chandler, D.P.1
Li, S.M.2
Spadoni, C.M.3
Drake, G.R.4
Balkwill, D.L.5
Fredrickson, J.K.6
Brockman, F.J.7
-
10
-
-
0027042311
-
Bacterial biomass and activity in the deep sediment layers of the Japan Sea, Hole 798B
-
127128
-
Cragg, B. A., Harvey, S. M., Fry, J. C., Herbert, R. A. and Parkes, R. J. (1992) Bacterial biomass and activity in the deep sediment layers of the Japan Sea, Hole 798B. Proc Ocean Drill Prog Sci Results, 127128, pp. 761-776.
-
(1992)
Proc Ocean Drill Prog Sci Results
, pp. 761-776
-
-
Cragg, B.A.1
Harvey, S.M.2
Fry, J.C.3
Herbert, R.A.4
Parkes, R.J.5
-
11
-
-
0025625385
-
Bacterial biomass and activity profiles within deep sediment layers
-
Cragg, B. A., Parkes, R. J., Fry, J. C., Herbert, R. A., Wimpenny, J WT and Getliff, J. M. (1990) Bacterial biomass and activity profiles within deep sediment layers. Proc Ocean Drill Prog Sci Results, 112, pp. 607-619.
-
(1990)
Proc Ocean Drill Prog Sci Results
, vol.112
, pp. 607-619
-
-
Cragg, B.A.1
Parkes, R.J.2
Fry, J.C.3
Herbert, R.A.4
Wimpenny, J.W.T.5
Getliff, J.M.6
-
12
-
-
19944399720
-
Distributions of microbial activities in deep subseafloor sediments
-
D'Hondt, S., Jorgensen, B. B., Miller, D. J., Batzke, A., Blake, R. Cragg, B. A. et al. (2004) Distributions of microbial activities in deep subseafloor sediments. Science, 306, pp. 2216-2221.
-
(2004)
Science
, vol.306
, pp. 2216-2221
-
-
D'Hondt, S.1
Jorgensen, B.B.2
Miller, D.J.3
Batzke, A.4
Blake, R.5
Cragg, B.A.6
-
13
-
-
0035208368
-
Sulfate reduction at a lignite seam: Microbial abundance and activity
-
Detmers, J., Schulte, U., Strauss, H. and Kuever, J. (2001) Sulfate reduction at a lignite seam: Microbial abundance and activity. Micro Ecol, 42, pp. 238-247.
-
(2001)
Micro Ecol
, vol.42
, pp. 238-247
-
-
Detmers, J.1
Schulte, U.2
Strauss, H.3
Kuever, J.4
-
14
-
-
3643075295
-
-
Institute of Geological & Nuclear Sciences, Lower Hurt, New Zealand
-
Edbrooke, S. W., Sykes, R. and Pocknall, D. T. (1994) Geology of the Waikato coal measures, Waikato coal region, New Zealand, Institute of Geological & Nuclear Sciences, Lower Hurt, New Zealand
-
(1994)
Geology of the Waikato Coal Measures, Waikato Coal Region, New Zealand
-
-
Edbrooke, S.W.1
Sykes, R.2
Pocknall, D.T.3
-
15
-
-
33845869861
-
Significance of microbial activity in Australian coal bed methane reservoirs-a review
-
Faiz, M. and Hendry, P. (2006) Significance of microbial activity in Australian coal bed methane reservoirs-a review. Bull Can Petrol Geol, 54, pp. 261-272.
-
(2006)
Bull Can Petrol Geol
, vol.54
, pp. 261-272
-
-
Faiz, M.1
Hendry, P.2
-
16
-
-
0032818698
-
Biotechnology and microbiology of coal degradation
-
Fakoussa, R. M. and Hofrichter, M. (1999) Biotechnology and microbiology of coal degradation. Appl Microbiol Biotechnol, 52, pp. 25-40.
-
(1999)
Appl Microbiol Biotechnol
, vol.52
, pp. 25-40
-
-
Fakoussa, R.M.1
Hofrichter, M.2
-
17
-
-
85023819181
-
Geomicrobial processes and biodiversity in the deep terrestrial subsurface
-
Fredrickson, J. K. and Balkwill, D. L. (2006) Geomicrobial processes and biodiversity in the deep terrestrial subsurface. Geomicrobiol J, 23, pp. 345-356.
-
(2006)
Geomicrobiol J
, vol.23
, pp. 345-356
-
-
Fredrickson, J.K.1
Balkwill, D.L.2
-
18
-
-
0028956922
-
Time-dependent changes in viable numbers and activities of aerobic heterotrophic bacteria in subsurface samples
-
Fredrickson, J. K., Li, S. W., Brockman, F. J., Haldeman, D. L., Amy, P. S. and Balkwill, D. L. (1995) Time-dependent changes in viable numbers and activities of aerobic heterotrophic bacteria in subsurface samples. J Microbiol Meth, 21, pp. 253-265.
-
(1995)
J Microbiol Meth
, vol.21
, pp. 253-265
-
-
Fredrickson, J.K.1
Li, S.W.2
Brockman, F.J.3
Haldeman, D.L.4
Amy, P.S.5
Balkwill, D.L.6
-
19
-
-
0025919183
-
Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the Atlantic coastal-plain
-
Fredrickson, J. K., Balkwill, D. L., Zachara, J. M., Li, S MW, Brockman, F. J. and Simmons, M. A. (1991) Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the Atlantic coastal-plain. Appl Environ Microbiol, 57, pp. 402-411.
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 402-411
-
-
Fredrickson, J.K.1
Balkwill, D.L.2
Zachara, J.M.3
Li, S.M.W.4
Brockman, F.J.5
Simmons, M.A.6
-
20
-
-
0031464958
-
Pore-size constraints on the activity and survival of subsurface bacteria in a late Cretaceous shale-sandstone sequence, northwestern New Mexico
-
Fredrickson, J. K., McKinley, J. P., Bjornstad, B. N., Long, P. E., Ringelberg, D. B. White, D. C. et al. (1997) Pore-size constraints on the activity and survival of subsurface bacteria in a late Cretaceous shale-sandstone sequence, northwestern New Mexico. Geomicrobiol J, 14, pp. 183-202.
-
(1997)
Geomicrobiol J
, vol.14
, pp. 183-202
-
-
Fredrickson, J.K.1
McKinley, J.P.2
Bjornstad, B.N.3
Long, P.E.4
Ringelberg, D.B.5
White, D.C.6
-
21
-
-
77956838067
-
Direct methods and biomass estimation
-
Fry, J. C. (1990) Direct methods and biomass estimation. Meth Microbiol, 22, pp. 41-85.
-
(1990)
Meth Microbiol
, vol.22
, pp. 41-85
-
-
Fry, J.C.1
-
22
-
-
33748491732
-
Analysis of DGGE profiles to explore the relationship between prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin
-
Fry, J. C., Webster, G., Cragg, B. A., Weightman, A. J. and Parkes, R. J. (2006) Analysis of DGGE profiles to explore the relationship between prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiol Ecol, 58, pp. 86-98.
-
(2006)
FEMS Microbiol Ecol
, vol.58
, pp. 86-98
-
-
Fry, J.C.1
Webster, G.2
Cragg, B.A.3
Weightman, A.J.4
Parkes, R.J.5
-
23
-
-
53749085723
-
The distribution of microbail taxa in the subsurface water of the Kalahari Shield, South Africa
-
Gihring, T. M., Moser, D. P., Lin, L. H., Davidson, M., Onstott, T. C. Morgan, L. et al. (2006) The distribution of microbail taxa in the subsurface water of the Kalahari Shield, South Africa. Geomicrobiol J, 23, pp. 415-430.
-
(2006)
Geomicrobiol J
, vol.23
, pp. 415-430
-
-
Gihring, T.M.1
Moser, D.P.2
Lin, L.H.3
Davidson, M.4
Onstott, T.C.5
Morgan, L.6
-
24
-
-
0000262823
-
Evolution, diversity, and molecular ecology of marine prokaryotes
-
Wiley, New York
-
Giovannoni, S. J. and Rappe, M. S. (2000) Evolution, diversity, and molecular ecology of marine prokaryotes. Microbial Ecology of the Oceans, pp. 47-84. Wiley, New York
-
(2000)
Microbial Ecology of the Oceans
, pp. 47-84
-
-
Giovannoni, S.J.1
Rappe, M.S.2
-
25
-
-
18144401354
-
Research paper: Microbial survival - The paleome: A sedimentary genetic record of past microbial communities
-
Inagaki, F., Okada, H., Tsapin, A. I. and Nealson, K. H. (2005) Research paper: Microbial survival - The paleome: A sedimentary genetic record of past microbial communities. Astrobiology, 5, pp. 141-153.
-
(2005)
Astrobiology
, vol.5
, pp. 141-153
-
-
Inagaki, F.1
Okada, H.2
Tsapin, A.I.3
Nealson, K.H.4
-
26
-
-
2142857748
-
Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk
-
Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T. Aoki, K. et al. (2003) Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk. Appl Environ Microbiol, 69, pp. 7224-7235.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 7224-7235
-
-
Inagaki, F.1
Suzuki, M.2
Takai, K.3
Oida, H.4
Sakamoto, T.5
Aoki, K.6
-
27
-
-
33644505436
-
Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments, on the Pacific Ocean Margin
-
Inagaki, F., Nunoura, T., Nakagawa, S., Teske, A., Lever, M. Lauer, A. et al. (2006) Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments, on the Pacific Ocean Margin. Proc Natl Acad Sci USA, 103, pp. 2815-2820.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2815-2820
-
-
Inagaki, F.1
Nunoura, T.2
Nakagawa, S.3
Teske, A.4
Lever, M.5
Lauer, A.6
-
28
-
-
25144525184
-
Isolation and characterization of Sulfurospirillum carboxydovorans sp nov., a new microaerophilic carbon monoxide oxidizing epsilon Proteobacterium
-
Jensen, A. and Finster, K. (2005) Isolation and characterization of Sulfurospirillum carboxydovorans sp nov., a new microaerophilic carbon monoxide oxidizing epsilon Proteobacterium. Anto Van Leeuwenhoek Inter J Gen Mol Microbiol, 87, pp. 339-353.
-
(2005)
Anto Van Leeuwenhoek Inter J Gen Mol Microbiol
, vol.87
, pp. 339-353
-
-
Jensen, A.1
Finster, K.2
-
29
-
-
48049105163
-
Techniques for contamination assessment during drilling for terrestrial subsurface sediments
-
Kallmeyer, J., Mangelsdorf, K., Cragg, B. and Horsfield, B. (2006) Techniques for contamination assessment during drilling for terrestrial subsurface sediments. Geomicrobiol J, 23, pp. 227-239.
-
(2006)
Geomicrobiol J
, vol.23
, pp. 227-239
-
-
Kallmeyer, J.1
Mangelsdorf, K.2
Cragg, B.3
Horsfield, B.4
-
30
-
-
14644396355
-
A cold chromium distillation procedure for radiolabeled sulfide applied to sulfate reduction measurements
-
Kallmeyer, J., Ferdelman, T. G., Weber, A., Fossing, H. and Jorgensen, B. B. (2004) A cold chromium distillation procedure for radiolabeled sulfide applied to sulfate reduction measurements. Limnol Oceanog Meth, 2, pp. 171-180.
-
(2004)
Limnol Oceanog Meth
, vol.2
, pp. 171-180
-
-
Kallmeyer, J.1
Ferdelman, T.G.2
Weber, A.3
Fossing, H.4
Jorgensen, B.B.5
-
31
-
-
0028982333
-
Microbiological comparisons within and across contiguous lacustrine, paleosol, and fluvial subsurface sediments
-
Kieft, T. L., Fredrickson, J. K., McKinley, J. P., Bjornstad, B. N., Rawson, S. A. Phelps, T. J. et al. (1995) Microbiological comparisons within and across contiguous lacustrine, paleosol, and fluvial subsurface sediments. Appl Environ Microbiol, 61, pp. 749-757.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 749-757
-
-
Kieft, T.L.1
Fredrickson, J.K.2
McKinley, J.P.3
Bjornstad, B.N.4
Rawson, S.A.5
Phelps, T.J.6
-
32
-
-
0242573334
-
Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware Estuary
-
Kirchman, D. L., Yu, L. and Cottrell, M. T. (2003) Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware Estuary. Appl Environ Microbiol, 69, pp. 6587-6596.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6587-6596
-
-
Kirchman, D.L.1
Yu, L.2
Cottrell, M.T.3
-
33
-
-
12244272161
-
Diversity and distribution of methanotrophic archaea at cold seeps
-
Knittel, K., Losekann, T., Boetius, A., Kort, R. and Amann, R. (2005) Diversity and distribution of methanotrophic archaea at cold seeps. Appl Environ Microbiol, 71, pp. 467-479.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 467-479
-
-
Knittel, K.1
Losekann, T.2
Boetius, A.3
Kort, R.4
Amann, R.5
-
34
-
-
0038107871
-
Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176)
-
Kormas, K. A., Smith, D. C., Edgcomb, V. and Teske, A. (2003) Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176). FEMS Microbiol Ecol, 45, pp. 115-125.
-
(2003)
FEMS Microbiol Ecol
, vol.45
, pp. 115-125
-
-
Kormas, K.A.1
Smith, D.C.2
Edgcomb, V.3
Teske, A.4
-
35
-
-
33644954983
-
Molecular analysis of deep subsurface Cretaceous rock indicates abundant Fe(III)- and S-O-reducing bacteria in a sulfate-rich environment
-
Kovacik, W. P., Takai, K., Mormile, M. R., McKinley, J. P., Brockman, F. J., Fredrickson, J. K. and Holben, W. E. (2006) Molecular analysis of deep subsurface Cretaceous rock indicates abundant Fe(III)- and S-O-reducing bacteria in a sulfate-rich environment. Environ Microbiol, 8, pp. 141-155.
-
(2006)
Environ Microbiol
, vol.8
, pp. 141-155
-
-
Kovacik, W.P.1
Takai, K.2
Mormile, M.R.3
McKinley, J.P.4
Brockman, F.J.5
Fredrickson, J.K.6
Holben, W.E.7
-
36
-
-
49149123994
-
Microbial methane formation from hard coal and timber in an abandoned coal mine
-
Kruger, M., Beckmann, S., Engelen, B., Thielemann, T., Cramer, B., Schippers, A. and Cypionka, H. (2008) Microbial methane formation from hard coal and timber in an abandoned coal mine. Geomicrobiol J, 25, pp. 315-321.
-
(2008)
Geomicrobiol J
, vol.25
, pp. 315-321
-
-
Kruger, M.1
Beckmann, S.2
Engelen, B.3
Thielemann, T.4
Cramer, B.5
Schippers, A.6
Cypionka, H.7
-
37
-
-
0036876847
-
Anaerobic microbial growth from components of cretaceous shales
-
Krumholz, L. R., Harris, S. H. and Suflita, J. M. (2002) Anaerobic microbial growth from components of cretaceous shales. Geomicrobiol J, 19, pp. 593-602.
-
(2002)
Geomicrobiol J
, vol.19
, pp. 593-602
-
-
Krumholz, L.R.1
Harris, S.H.2
Suflita, J.M.3
-
38
-
-
0030620638
-
Confined subsurface microbial communities in Cretaceous rock
-
Krumholz, L. R., McKinley, J. P., Ulrich, F. A. and Suflita, J. M. (1997) Confined subsurface microbial communities in Cretaceous rock. Nature, 386, pp. 64-66.
-
(1997)
Nature
, vol.386
, pp. 64-66
-
-
Krumholz, L.R.1
McKinley, J.P.2
Ulrich, F.A.3
Suflita, J.M.4
-
39
-
-
29144494967
-
Microbial diversity in coastal subsurface sediments: A cultivation approach using various electron acceptors and substrate gradients
-
Kopke, B., Wilms, R., Engelen, B., Cypionka, H. and Sass, H. (2005) Microbial diversity in coastal subsurface sediments: A cultivation approach using various electron acceptors and substrate gradients. Appl Environ Microbiol, 71, pp. 7819-7830.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7819-7830
-
-
Kopke, B.1
Wilms, R.2
Engelen, B.3
Cypionka, H.4
Sass, H.5
-
40
-
-
0031271897
-
Study of the mechanisms by which microorganisms solubilize and/or liquefy Spanish coals
-
Laborda, F., Fernandez, M., Luna, N. and Monistrol, I. F. (1997) Study of the mechanisms by which microorganisms solubilize and/or liquefy Spanish coals. Fuel Process Technol, 52, pp. 95-107.
-
(1997)
Fuel Process Technol
, vol.52
, pp. 95-107
-
-
Laborda, F.1
Fernandez, M.2
Luna, N.3
Monistrol, I.F.4
-
41
-
-
33947239403
-
Molecular phylogenetic diversity of the microbial community associated with a high-temperature petroleum reservoir at an offshore oilfield
-
Li, H., Yang, S. -Z., Mu, B. -Z., Rong, Z. -F. and Zhang, J. (2007) Molecular phylogenetic diversity of the microbial community associated with a high-temperature petroleum reservoir at an offshore oilfield. FEMS Microbiol Ecol, 60, pp. 74-84.
-
(2007)
FEMS Microbiol Ecol
, vol.60
, pp. 74-84
-
-
Li, H.1
Yang, S.-Z.2
Mu, B.-Z.3
Rong, Z.-F.4
Zhang, J.5
-
42
-
-
33750332574
-
Long-term sustainability of a high-energy, low-diversity crustal biome
-
Lin, L. H., Wang, P. L., Rumble, D., Lippmann-Pipke, J., Boice, E. Pratt, L. M. et al. (2006) Long-term sustainability of a high-energy, low-diversity crustal biome. Science, 314, pp. 479-482.
-
(2006)
Science
, vol.314
, pp. 479-482
-
-
Lin, L.H.1
Wang, P.L.2
Rumble, D.3
Lippmann-Pipke, J.4
Boice, E.5
Pratt, L.M.6
-
43
-
-
50049107012
-
Significant contribution of Archaea to extant biomass in marine subsurface sediments
-
Lipp, J. S., Morono, Y., Inagaki, F. and Hinrichs, K. U. (2008) Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature, 454, pp. 991-994.
-
(2008)
Nature
, vol.454
, pp. 991-994
-
-
Lipp, J.S.1
Morono, Y.2
Inagaki, F.3
Hinrichs, K.U.4
-
44
-
-
27144526424
-
A quantitative assessment of pressure dependent adaptive changes in the membrane lipids of piezosensitive deep sub-seafloor bacterium
-
Mangelsdorf, K., Zink, K. G., Birrien, J. L. and Toffin, L. (2005) A quantitative assessment of pressure dependent adaptive changes in the membrane lipids of piezosensitive deep sub-seafloor bacterium. Organ Geochem, 36, pp. 1459-1479.
-
(2005)
Organ Geochem
, vol.36
, pp. 1459-1479
-
-
Mangelsdorf, K.1
Zink, K.G.2
Birrien, J.L.3
Toffin, L.4
-
45
-
-
0034535113
-
Methanogen and bacterial diversity and distribution in deep gas hydrate sediments from the Cascadia Margin as revealed by 16S rRNA molecular analysis
-
Marchesi, J. R., Weightman, A. J., Cragg, B. A., Parkes, R. J. and Fry, J. C. (2001) Methanogen and bacterial diversity and distribution in deep gas hydrate sediments from the Cascadia Margin as revealed by 16S rRNA molecular analysis. FEMS Microbiol Ecol, 34, pp. 221-228.
-
(2001)
FEMS Microbiol Ecol
, vol.34
, pp. 221-228
-
-
Marchesi, J.R.1
Weightman, A.J.2
Cragg, B.A.3
Parkes, R.J.4
Fry, J.C.5
-
46
-
-
33644854313
-
Sensitive determination of microbial growth by nucleic acid staining in aqueous suspension
-
Martens-Habbena, W. and Sass, H. (2006) Sensitive determination of microbial growth by nucleic acid staining in aqueous suspension. Appl Environ Microbiol, 72, pp. 87-95.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 87-95
-
-
Martens-Habbena, W.1
Sass, H.2
-
47
-
-
0031901310
-
Microbial abundance and activity in a low-conductivity aquifer system in east-central Texas
-
Martino, D. P., Grossman, E. L., Ulrich, G. A., Burger, K. C., Schlichenmeyer, J. L., Suflita, J. M. and Ammerman, J. W. (1998) Microbial abundance and activity in a low-conductivity aquifer system in east-central Texas. Microb Ecol, 35, pp. 224-234.
-
(1998)
Microb Ecol
, vol.35
, pp. 224-234
-
-
Martino, D.P.1
Grossman, E.L.2
Ulrich, G.A.3
Burger, K.C.4
Schlichenmeyer, J.L.5
Suflita, J.M.6
Ammerman, J.W.7
-
48
-
-
0032916067
-
Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
-
McCaig, A. E., Glover, L. A. and Prosser, J. I. (1999) Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl Environ Microbiol, 65, pp. 1721-1730.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 1721-1730
-
-
McCaig, A.E.1
Glover, L.A.2
Prosser, J.I.3
-
49
-
-
0347723719
-
Temporal shifts in the geochemistry and microbial community structure of an ultradeep mine borehole following isolation
-
Moser, D. P., Onstott, T. C., Fredrickson, J. K., Brockman, F. J., Balkwill, D. L. Drake, G. R. et al. (2003) Temporal shifts in the geochemistry and microbial community structure of an ultradeep mine borehole following isolation. Geomicrobiol J, 20, pp. 517-548.
-
(2003)
Geomicrobiol J
, vol.20
, pp. 517-548
-
-
Moser, D.P.1
Onstott, T.C.2
Fredrickson, J.K.3
Brockman, F.J.4
Balkwill, D.L.5
Drake, G.R.6
-
50
-
-
0024198391
-
Burial-dominated cementation in non-tropical carbonates of the oligocene Te-Kuiti-Group, New-Zealand
-
Nelson, C. S., Harris, G. J. and Young, H. R. (1988) Burial-dominated cementation in non-tropical carbonates of the oligocene Te-Kuiti-Group, New-Zealand. Sediment Geol, 60, pp. 233-250.
-
(1988)
Sediment Geol
, vol.60
, pp. 233-250
-
-
Nelson, C.S.1
Harris, G.J.2
Young, H.R.3
-
51
-
-
0024190795
-
Subsurface stratigraphy, paleoenvironments, palynology, and depositional history of the Late Neogene Tauranga Group at Ohinewai, Lower Waikato Lowland, South-Auckland, New-Zealand
-
Nelson, C. S., Mildenhall, D. C., Todd, A. J. and Pocknall, D. T. (1988) Subsurface stratigraphy, paleoenvironments, palynology, and depositional history of the Late Neogene Tauranga Group at Ohinewai, Lower Waikato Lowland, South-Auckland, New-Zealand. New Zeal J Geol Geophys, 31, pp. 21-40.
-
(1988)
New Zeal J Geol Geophys
, vol.31
, pp. 21-40
-
-
Nelson, C.S.1
Mildenhall, D.C.2
Todd, A.J.3
Pocknall, D.T.4
-
52
-
-
1342289953
-
Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190
-
Newberry, C. J., Webster, G., Cragg, B. A., Parkes, R. J., Weightman, A. J. and Fry, J. C. (2004) Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190. Environ Microbiol, 6, pp. 274-287.
-
(2004)
Environ Microbiol
, vol.6
, pp. 274-287
-
-
Newberry, C.J.1
Webster, G.2
Cragg, B.A.3
Parkes, R.J.4
Weightman, A.J.5
Fry, J.C.6
-
53
-
-
10744223616
-
Indigenous and contaminant microbes in ultradeep mines
-
Onstott, T. C., Moser, D. P., Pfiffher, S. M., Fredrickson, J. K., Brockman, F. J. Phelps, T. J. et al. (2003) Indigenous and contaminant microbes in ultradeep mines. Environ Microbiol, 5, pp. 1168-1191.
-
(2003)
Environ Microbiol
, vol.5
, pp. 1168-1191
-
-
Onstott, T.C.1
Moser, D.P.2
Pfiffher, S.M.3
Fredrickson, J.K.4
Brockman, F.J.5
Phelps, T.J.6
-
54
-
-
0035317030
-
Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments
-
Orphan, V. J., Hinrichs, K. U., Ussier, W., Paull, C. K., Taylor, L. T. Sylva, S. P. et al. (2001) Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments. Appl Environ Microbiol, 67, pp. 1922-1934.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1922-1934
-
-
Orphan, V.J.1
Hinrichs, K.U.2
Ussier, W.3
Paull, C.K.4
Taylor, L.T.5
Sylva, S.P.6
-
55
-
-
0347794946
-
Recent studies on bacterial populations and processes in subseafloor sediments: A review
-
Parkes, R. J., Cragg, B. A. and Wellsbury, P. (2000) Recent studies on bacterial populations and processes in subseafloor sediments: A review. Hydrogeol J, 8, pp. 11-28.
-
(2000)
Hydrogeol J
, vol.8
, pp. 11-28
-
-
Parkes, R.J.1
Cragg, B.A.2
Wellsbury, P.3
-
56
-
-
0000796093
-
Bacterial biomass and activity in deep sediment layers from the Peru margin
-
Parkes, R. J., Cragg, B. A., Fry, J. C., Herbert, R. A. and Wimpenny, J WT (1990) Bacterial biomass and activity in deep sediment layers from the Peru margin. Philosophical Trans Roy Soc Lond Ser. Vol A-Math Phys Eng Sci, 331, pp. 139-153.
-
(1990)
Philosophical Trans Roy Soc Lond Ser. Vol A-Math Phys Eng Sci
, vol.331
, pp. 139-153
-
-
Parkes, R.J.1
Cragg, B.A.2
Fry, J.C.3
Herbert, R.A.4
Wimpenny, J.W.T.5
-
57
-
-
0029161663
-
A combined ecological and physiological approach to studying sulfate reduction within deep marine sediment layers
-
Parkes, R. J., Cragg, B. A., Bale, S. J., Goodman, K. and Fry, J. C. (1995) A combined ecological and physiological approach to studying sulfate reduction within deep marine sediment layers. J Microbiol Meth, 23, pp. 235-249.
-
(1995)
J Microbiol Meth
, vol.23
, pp. 235-249
-
-
Parkes, R.J.1
Cragg, B.A.2
Bale, S.J.3
Goodman, K.4
Fry, J.C.5
-
58
-
-
0028162155
-
Deep bacterial biosphere in Pacific-Ocean sediments
-
Parkes, R. J., Cragg, B. A., Bale, S. J., Getliff, J. M., Goodman, K. Rochelle, P. A. et al. (1994) Deep bacterial biosphere in Pacific-Ocean sediments. Nature, 371, pp. 410-413.
-
(1994)
Nature
, vol.371
, pp. 410-413
-
-
Parkes, R.J.1
Cragg, B.A.2
Bale, S.J.3
Getliff, J.M.4
Goodman, K.5
Rochelle, P.A.6
-
59
-
-
22944465797
-
Deep sub-seafloor prokaryotes stimulated at interfaces over geological time
-
Parkes, R. J., Webster, G., Cragg, B. A., Weightman, A. J., Newberry, C. J. Ferdelman, T. G. et al. (2005) Deep sub-seafloor prokaryotes stimulated at interfaces over geological time. Nature, 436, pp. 390-394.
-
(2005)
Nature
, vol.436
, pp. 390-394
-
-
Parkes, R.J.1
Webster, G.2
Cragg, B.A.3
Weightman, A.J.4
Newberry, C.J.5
Ferdelman, T.G.6
-
60
-
-
0030875389
-
Microbial life in deep granitic rock
-
Pedersen, K. (1997) Microbial life in deep granitic rock. FEMS Microbiol Rev, 20, pp. 399-414.
-
(1997)
FEMS Microbiol Rev
, vol.20
, pp. 399-414
-
-
Pedersen, K.1
-
61
-
-
0029973821
-
16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Aspo hard rock laboratory, Sweden
-
Pedersen, K., Arlinger, J., Ekendahl, S. and Hallbeck, L. (1996) 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Aspo hard rock laboratory, Sweden. FEMS Microbiol Ecol, 19, pp. 249-262.
-
(1996)
FEMS Microbiol Ecol
, vol.19
, pp. 249-262
-
-
Pedersen, K.1
Arlinger, J.2
Ekendahl, S.3
Hallbeck, L.4
-
62
-
-
44449089591
-
Extending the sub-sea-floor biosphere
-
Roussel, E. G., Bonavita, M AC, Querellou, J., Cragg, B. A., Webster, G., Prieur, D. and Parkes, R. J. (2008) Extending the sub-sea-floor biosphere. Science, 320, p. 1046.
-
(2008)
Science
, vol.320
, pp. 1046
-
-
Roussel, E.G.1
Bonavita, M.A.C.2
Querellou, J.3
Cragg, B.A.4
Webster, G.5
Prieur, D.6
Parkes, R.J.7
-
63
-
-
14544290535
-
Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria
-
Schippers, A., Neretin, L. N., Kallmeyer, J., Ferdelman, T. G., Cragg, B. A., Parkes, R. J. and Jorgensen, B. B. (2005) Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria. Nature, 433, pp. 861-864.
-
(2005)
Nature
, vol.433
, pp. 861-864
-
-
Schippers, A.1
Neretin, L.N.2
Kallmeyer, J.3
Ferdelman, T.G.4
Cragg, B.A.5
Parkes, R.J.6
Jorgensen, B.B.7
-
64
-
-
34247153458
-
Analytical methodology for TEX86 paleothermometry by high-performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometry
-
Schouten, S., Huguet, C., Hopmans, E. G., Kienhuis, M VM and Damste, J SS (2007) Analytical methodology for TEX86 paleothermometry by high-performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometry. Anal Chem, 79, pp. 2940-2944.
-
(2007)
Anal Chem
, vol.79
, pp. 2940-2944
-
-
Schouten, S.1
Huguet, C.2
Hopmans, E.G.3
Kienhuis, M.V.M.4
Damste, J.S.S.5
-
65
-
-
36248931414
-
Molecular characterization of microbial communities in deep coal seam groundwater of northern Japan
-
Shimizu, S., Akiyama, M., Naganuma, T., Fujioka, M., Nako, M. and Ishijima, Y. (2007) Molecular characterization of microbial communities in deep coal seam groundwater of northern Japan. Geobiology, 5, pp. 423-433.
-
(2007)
Geobiology
, vol.5
, pp. 423-433
-
-
Shimizu, S.1
Akiyama, M.2
Naganuma, T.3
Fujioka, M.4
Nako, M.5
Ishijima, Y.6
-
66
-
-
0024842297
-
Distribution of aerobic bacteria, protozoa, algae and fungi in deep subsurface sediments
-
Sinclair, J. L. and Ghiorse, W. C. (1989) Distribution of aerobic bacteria, protozoa, algae and fungi in deep subsurface sediments. Geomicrobiol J, 7, pp. 15-31.
-
(1989)
Geomicrobiol J
, vol.7
, pp. 15-31
-
-
Sinclair, J.L.1
Ghiorse, W.C.2
-
67
-
-
42349093356
-
Methane-producing microbial community in a coal bed of the Illinois Basin
-
Strapoc, D., Picardal, F. W., Turich, C., Schaperdoth, I., Macalady, J. L. Lipp, J. S. et al. (2008) Methane-producing microbial community in a coal bed of the Illinois Basin. Appl Environ Microbiol, 74, pp. 2424-2432.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2424-2432
-
-
Strapoc, D.1
Picardal, F.W.2
Turich, C.3
Schaperdoth, I.4
Macalady, J.L.5
Lipp, J.S.6
-
68
-
-
0031943683
-
Relations between depth of burial, vitrinite reflectance and geothermal gradient
-
Suggate, R. P. (1998) Relations between depth of burial, vitrinite reflectance and geothermal gradient. J Petrol Geol, 21, pp. 5-32.
-
(1998)
J Petrol Geol
, vol.21
, pp. 5-32
-
-
Suggate, R.P.1
-
69
-
-
0036766875
-
Application of Rank(S-r), a maturity index based on chemical analyses of coals
-
Suggate, R. P. (2002) Application of Rank(S-r), a maturity index based on chemical analyses of coals. Mar Petrol Geol, 19, pp. 929-950.
-
(2002)
Mar Petrol Geol
, vol.19
, pp. 929-950
-
-
Suggate, R.P.1
-
70
-
-
0012715939
-
Guidelines for assessing the petroleum potential of coaly source rocks using Rock-Eval pyrolysis
-
Sykes, R. and Snowdon, L. R. (2002) Guidelines for assessing the petroleum potential of coaly source rocks using Rock-Eval pyrolysis. Organ Geochem, 33, pp. 1441-1455.
-
(2002)
Organ Geochem
, vol.33
, pp. 1441-1455
-
-
Sykes, R.1
Snowdon, L.R.2
-
71
-
-
10644294903
-
Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods
-
Suss, J., Engelen, B., Cypionka, H. and Sass, H. (2004) Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods. FEMS Microbiol Ecol, 51, pp. 109-121.
-
(2004)
FEMS Microbiol Ecol
, vol.51
, pp. 109-121
-
-
Suss, J.1
Engelen, B.2
Cypionka, H.3
Sass, H.4
-
72
-
-
0035656111
-
Archaeal diversity in waters from deep South African gold mines
-
Takai, K., Moser, D. P., DeFlaun, M., Onstott, T. C. and Fredrickson, J. K. (2001) Archaeal diversity in waters from deep South African gold mines. Appl Environ Microbiol, 67, pp. 5750-5760.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5750-5760
-
-
Takai, K.1
Moser, D.P.2
DeFlaun, M.3
Onstott, T.C.4
Fredrickson, J.K.5
-
73
-
-
0037383728
-
Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock
-
Takai, K., Mormile, M. R., McKinley, J. P., Brockman, F. J., Holben, W. E., Kovacik, W. P. and Fredrickson, J. K. (2003) Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock. Environ Microbiol, 5, pp. 309-320.
-
(2003)
Environ Microbiol
, vol.5
, pp. 309-320
-
-
Takai, K.1
Mormile, M.R.2
McKinley, J.P.3
Brockman, F.J.4
Holben, W.E.5
Kovacik, W.P.6
Fredrickson, J.K.7
-
74
-
-
0031828298
-
Sulfur cycling in the terrestrial subsurface: Commensal interactions, spatial scales, and microbial heterogeneity
-
Ulrich, G. A., Martino, D., Burger, K., Routh, J., Grossman, E. L., Ammerman, J. W. and Suflita, J. M. (1998) Sulfur cycling in the terrestrial subsurface: Commensal interactions, spatial scales, and microbial heterogeneity. Microb Ecol, 36, pp. 141-151.
-
(1998)
Microb Ecol
, vol.36
, pp. 141-151
-
-
Ulrich, G.A.1
Martino, D.2
Burger, K.3
Routh, J.4
Grossman, E.L.5
Ammerman, J.W.6
Suflita, J.M.7
-
75
-
-
0142091782
-
Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: A cautionary tale
-
Webster, G., Newberry, C. J., Fry, J. C. and Weightman, A. J. (2003) Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: A cautionary tale. J Microbiol Meth, 55, pp. 155-164.
-
(2003)
J Microbiol Meth
, vol.55
, pp. 155-164
-
-
Webster, G.1
Newberry, C.J.2
Fry, J.C.3
Weightman, A.J.4
-
76
-
-
33746716094
-
Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin
-
Webster, G., Parkes, R. J., Cragg, B. A., Newberry, C. J., Weightman, A. J. and Fry, J. C. (2006) Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiol Ecol, 58, pp. 65-85.
-
(2006)
FEMS Microbiol Ecol
, vol.58
, pp. 65-85
-
-
Webster, G.1
Parkes, R.J.2
Cragg, B.A.3
Newberry, C.J.4
Weightman, A.J.5
Fry, J.C.6
-
77
-
-
0036806079
-
Geomicrobiology of deep, low organic carbon sediments in the Woodlark Basin, Pacific Ocean
-
Wellsbury, P., Mather, I. and Parkes, R. J. (2002) Geomicrobiology of deep, low organic carbon sediments in the Woodlark Basin, Pacific Ocean. FEMS Microbiol Ecol, 42, pp. 59-70.
-
(2002)
FEMS Microbiol Ecol
, vol.42
, pp. 59-70
-
-
Wellsbury, P.1
Mather, I.2
Parkes, R.J.3
-
78
-
-
0033997127
-
The geomicrobiology of deep marine sediments from Blake Ridge containing methane hydrate (Sites 994, 995, and 997)
-
Wellsbury, P., Goodman, K., Cragg, B. A. and Parkes, R. J. (2000) The geomicrobiology of deep marine sediments from Blake Ridge containing methane hydrate (Sites 994, 995, and 997). Proc Ocean Drill Prog: Sci Res, 164, pp. 379-391.
-
(2000)
Proc Ocean Drill Prog: Sci Res
, vol.164
, pp. 379-391
-
-
Wellsbury, P.1
Goodman, K.2
Cragg, B.A.3
Parkes, R.J.4
-
79
-
-
0032499758
-
Prokaryotes: The unseen majority
-
Whitman, W. B., Coleman, D. C. and Wiebe, W. J. (1998) Prokaryotes: The unseen majority. Proc Nat Acad Sci USA, 95, pp. 6578-6583.
-
(1998)
Proc Nat Acad Sci USA
, vol.95
, pp. 6578-6583
-
-
Whitman, W.B.1
Coleman, D.C.2
Wiebe, W.J.3
-
80
-
-
0035963378
-
Biodegradation of oil in uplifted basins prevented by deep-burial sterilization
-
Wilhelms, A., Larter, S. R., Head, I., Farrimond, P., di-Primio, R. and Zwach, C. (2001) Biodegradation of oil in uplifted basins prevented by deep-burial sterilization. Nature, 411, pp. 1034-1037.
-
(2001)
Nature
, vol.411
, pp. 1034-1037
-
-
Wilhelms, A.1
Larter, S.R.2
Head, I.3
Farrimond, P.4
di-Primio, R.5
Zwach, C.6
-
81
-
-
11244344442
-
Efficient and rapid method for extraction of intact phospholipids from sediments combined with molecular structure elucidation using LC-ESI-MS-MS analysis
-
Zink, K. G. and Mangelsdorf, K. (2004) Efficient and rapid method for extraction of intact phospholipids from sediments combined with molecular structure elucidation using LC-ESI-MS-MS analysis. Anal Bioanal Chem, 380, pp. 798-812.
-
(2004)
Anal Bioanal Chem
, vol.380
, pp. 798-812
-
-
Zink, K.G.1
Mangelsdorf, K.2
-
82
-
-
0038243714
-
Intact phospholipids-microbial "life markers" in marine deep subsurface sediments
-
Zink, K. G., Wilkes, H., Disko, U., Elvert, M. and Horsfield, B. (2003) Intact phospholipids-microbial "life markers" in marine deep subsurface sediments. Orga Geochem, 34, pp. 755-769.
-
(2003)
Orga Geochem
, vol.34
, pp. 755-769
-
-
Zink, K.G.1
Wilkes, H.2
Disko, U.3
Elvert, M.4
Horsfield, B.5
|