메뉴 건너뛰기




Volumn 110, Issue 7, 2013, Pages 1884-1894

A modified metabolic model for mixed culture fermentation with energy conserving electron bifurcation reaction and metabolite transport energy

Author keywords

Energy conserving electron bifurcation reaction; Metabolic modeling; Metabolite transport energy; Mixed culture fermentation; Transport rate coefficient; Variable stoichiometry

Indexed keywords

ENERGY-CONSERVING; METABOLIC MODELING; METABOLITE TRANSPORTS; MIXED CULTURES; TRANSPORT RATE;

EID: 84878379659     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.24855     Document Type: Article
Times cited : (40)

References (48)
  • 1
    • 64549154964 scopus 로고    scopus 로고
    • Anaerobic homolactate fermentation with Saccharomyces cerevisiae results in depletion of ATP and impaired metabolic activity
    • Abbott DA, Brink Jvd, Minneboo IMK, Pronk JT, Maris AJAv. 2009. Anaerobic homolactate fermentation with Saccharomyces cerevisiae results in depletion of ATP and impaired metabolic activity. FEMS Yeast Res 9(3):349-357.
    • (2009) FEMS Yeast Res , vol.9 , Issue.3 , pp. 349-357
    • Abbott, D.A.1    Brink, J.2    Minneboo, I.M.K.3    Pronk, J.T.4    Maris, AJA.5
  • 2
    • 34547868108 scopus 로고    scopus 로고
    • Generic and specific transcriptional responses to different weak organic acids in anaerobic chemostat cultures of Saccharomyces cerevisiae
    • Abbott DA, Knijnenburg TA, De Poorter LMI, Reinders MJT, Pronk JT, Van Maris AJA. 2007. Generic and specific transcriptional responses to different weak organic acids in anaerobic chemostat cultures of Saccharomyces cerevisiae. FEMS Yeast Res 7(6):819-833.
    • (2007) FEMS Yeast Res , vol.7 , Issue.6 , pp. 819-833
    • Abbott, D.A.1    Knijnenburg, T.A.2    De Poorter, L.M.I.3    Reinders, M.J.T.4    Pronk, J.T.5    Van Maris, A.J.A.6
  • 3
    • 43049153255 scopus 로고    scopus 로고
    • A pseudo-stoichiometric dynamic model of anaerobic hydrogen production from molasses
    • Aceves-Lara C-A, Latrille E, Bernet N, Buffière P, Steyer J-P. 2008. A pseudo-stoichiometric dynamic model of anaerobic hydrogen production from molasses. Water Res 42(10-11):2539-2550.
    • (2008) Water Res , vol.42 , Issue.10-11 , pp. 2539-2550
    • Aceves-Lara, C.-A.1    Latrille, E.2    Bernet, N.3    Buffière, P.4    Steyer, J.-P.5
  • 4
    • 33144475990 scopus 로고    scopus 로고
    • Pure-culture growth of fermentative bacteria, facilitated by H2 removal: Bioenergetics and H2 production
    • Adams CJ, Redmond MC, Valentine DL. 2006. Pure-culture growth of fermentative bacteria, facilitated by H2 removal: Bioenergetics and H2 production. Appl Environ Microbiol 72(2):1079-1085.
    • (2006) Appl Environ Microbiol , vol.72 , Issue.2 , pp. 1079-1085
    • Adams, C.J.1    Redmond, M.C.2    Valentine, D.L.3
  • 5
    • 33751354264 scopus 로고    scopus 로고
    • Control of fatty acid desaturation: A mechanism conserved from bacteria to humans
    • Aguilar PS, De Mendoza D. 2006. Control of fatty acid desaturation: A mechanism conserved from bacteria to humans. Mol Microbiol 62(6):1507-1514.
    • (2006) Mol Microbiol , vol.62 , Issue.6 , pp. 1507-1514
    • Aguilar, P.S.1    De Mendoza, D.2
  • 7
    • 79951579402 scopus 로고    scopus 로고
    • Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes
    • Biegel E, Schmidt S, González J, Müller V. 2011. Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes. Cell Mol Life Sci 68(4):613-634.
    • (2011) Cell Mol Life Sci , vol.68 , Issue.4 , pp. 613-634
    • Biegel, E.1    Schmidt, S.2    González, J.3    Müller, V.4
  • 9
    • 7244259181 scopus 로고    scopus 로고
    • Bacterial Na+- or H+-coupled ATP synthases operating at low electrochemical potential
    • Dimroth P, Cook GM. 2004. Bacterial Na+- or H+-coupled ATP synthases operating at low electrochemical potential. Adv Microb Physiol 49:175-218.
    • (2004) Adv Microb Physiol , vol.49 , pp. 175-218
    • Dimroth, P.1    Cook, G.M.2
  • 10
    • 0036138487 scopus 로고    scopus 로고
    • Effect of pH on hydrogen production from glucose by a mixed culture
    • Fang HHP, Liu H. 2002. Effect of pH on hydrogen production from glucose by a mixed culture. Bioresour Technol 82(1):87-93.
    • (2002) Bioresour Technol , vol.82 , Issue.1 , pp. 87-93
    • Fang, H.H.P.1    Liu, H.2
  • 11
    • 77951125481 scopus 로고    scopus 로고
    • Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity
    • DOI: 10.1038/msb.2010.11
    • Fendt S-M, Buescher JM, Rudroff F, Picotti P, Zamboni N, Sauer U. 2010. Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity. Mol Syst Biol 6:356. DOI: 10.1038/msb.2010.11
    • (2010) Mol Syst Biol , vol.6 , pp. 356
    • Fendt, S.-M.1    Buescher, J.M.2    Rudroff, F.3    Picotti, P.4    Zamboni, N.5    Sauer, U.6
  • 12
    • 0030987623 scopus 로고    scopus 로고
    • Control of the shift from homolactic acid to mixed-acid fermentation in Lactococcus lactis: Predominant role of the NADH/NAD+ ratio
    • Garrigues C, Loubiere P, Lindley N, Cocaign-Bousquet M. 1997. Control of the shift from homolactic acid to mixed-acid fermentation in Lactococcus lactis: Predominant role of the NADH/NAD+ ratio. J Bacteriol 179(17):5282-5287.
    • (1997) J Bacteriol , vol.179 , Issue.17 , pp. 5282-5287
    • Garrigues, C.1    Loubiere, P.2    Lindley, N.3    Cocaign-Bousquet, M.4
  • 14
    • 38649143651 scopus 로고    scopus 로고
    • Energy conservation via electron-transferring flavoprotein in anaerobic bacteria
    • Herrmann G, Jayamani E, Mai G, Buckel W. 2008. Energy conservation via electron-transferring flavoprotein in anaerobic bacteria. J Bacteriol 190(3):784-791.
    • (2008) J Bacteriol , vol.190 , Issue.3 , pp. 784-791
    • Herrmann, G.1    Jayamani, E.2    Mai, G.3    Buckel, W.4
  • 15
    • 33748551648 scopus 로고    scopus 로고
    • Effect of gas sparging on continuous fermentative hydrogen production
    • Kim D-H, Han S-K, Kim S-H, Shin H-S. 2006. Effect of gas sparging on continuous fermentative hydrogen production. Int J Hydrogen Energy 31(15):2158-2169.
    • (2006) Int J Hydrogen Energy , vol.31 , Issue.15 , pp. 2158-2169
    • Kim, D.-H.1    Han, S.-K.2    Kim, S.-H.3    Shin, H.-S.4
  • 16
    • 34249952423 scopus 로고    scopus 로고
    • Mixed culture biotechnology for bioenergy production
    • Kleerebezem R, van Loosdrecht MCM. 2007. Mixed culture biotechnology for bioenergy production. Curr Opin Biotechnol 18(3):207-212.
    • (2007) Curr Opin Biotechnol , vol.18 , Issue.3 , pp. 207-212
    • Kleerebezem, R.1    van Loosdrecht, M.C.M.2
  • 17
    • 73949145190 scopus 로고    scopus 로고
    • A generalized method for thermodynamic state analysis of environmental systems
    • Kleerebezem R, Van Loosdrecht MCM. 2010. A generalized method for thermodynamic state analysis of environmental systems. Crit Rev Environ Sci Technol 40(1):1-54.
    • (2010) Crit Rev Environ Sci Technol , vol.40 , Issue.1 , pp. 1-54
    • Kleerebezem, R.1    Van Loosdrecht, M.C.M.2
  • 18
    • 77949385752 scopus 로고    scopus 로고
    • Bacterial adaptation through distributed sensing of metabolic fluxes
    • DOI: 10.1038/msb.2010.11
    • Kotte O, Zaugg JB, Heinemann M. 2010. Bacterial adaptation through distributed sensing of metabolic fluxes. Mol Syst Biol 6:355. DOI: 10.1038/msb.2010.11
    • (2010) Mol Syst Biol , vol.6 , pp. 355
    • Kotte, O.1    Zaugg, J.B.2    Heinemann, M.3
  • 20
    • 70350489219 scopus 로고    scopus 로고
    • An electron-flow model can predict complex redox reactions in mixed-culture fermentative BioH(2): Microbial ecology evidence
    • Lee HS, Krajmalinik-Brown R, Zhang HS, Rittmann BE. 2009. An electron-flow model can predict complex redox reactions in mixed-culture fermentative BioH(2): Microbial ecology evidence. Biotechnol Bioeng 104(4):687-697.
    • (2009) Biotechnol Bioeng , vol.104 , Issue.4 , pp. 687-697
    • Lee, H.S.1    Krajmalinik-Brown, R.2    Zhang, H.S.3    Rittmann, B.E.4
  • 21
    • 41649109093 scopus 로고    scopus 로고
    • Thermodynamic evaluation on H-2 production in glucose fermentation
    • Lee HS, Salerno MB, Rittmann BE. 2008. Thermodynamic evaluation on H-2 production in glucose fermentation. Environ Sci Technol 42(7):2401-2407.
    • (2008) Environ Sci Technol , vol.42 , Issue.7 , pp. 2401-2407
    • Lee, H.S.1    Salerno, M.B.2    Rittmann, B.E.3
  • 24
    • 38649099718 scopus 로고    scopus 로고
    • Coupled ferredoxin and crotonyl coenzyme A (CoA) reduction with NADH catalyzed by the butyryl-CoA dehydrogenase/Etf complex from clostridium kluyveri
    • Li F, Hinderberger J, Seedorf H, Zhang J, Buckel W, Thauer RK. 2008. Coupled ferredoxin and crotonyl coenzyme A (CoA) reduction with NADH catalyzed by the butyryl-CoA dehydrogenase/Etf complex from clostridium kluyveri. J Bacteriol 190(3):843-850.
    • (2008) J Bacteriol , vol.190 , Issue.3 , pp. 843-850
    • Li, F.1    Hinderberger, J.2    Seedorf, H.3    Zhang, J.4    Buckel, W.5    Thauer, R.K.6
  • 25
    • 1642277665 scopus 로고    scopus 로고
    • Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon
    • Louis P, Duncan SH, McCrae SI, Millar J, Jackson MS, Flint HJ. 2004. Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon. J Bacteriol 186(7):2099-2106.
    • (2004) J Bacteriol , vol.186 , Issue.7 , pp. 2099-2106
    • Louis, P.1    Duncan, S.H.2    McCrae, S.I.3    Millar, J.4    Jackson, M.S.5    Flint, H.J.6
  • 26
    • 63849241608 scopus 로고    scopus 로고
    • Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine
    • Louis P, Flint HJ. 2009. Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine. FEMS Microbiol Lett 294(1):1-8.
    • (2009) FEMS Microbiol Lett , vol.294 , Issue.1 , pp. 1-8
    • Louis, P.1    Flint, H.J.2
  • 27
    • 6044224979 scopus 로고    scopus 로고
    • Microbial export of lactic and 3-hydroxypropanoic acid: Implications for industrial fermentation processes
    • Maris AJAv, Konings WN, Dijken JPv, Pronk JT. 2004. Microbial export of lactic and 3-hydroxypropanoic acid: Implications for industrial fermentation processes. Metab Eng 6(4):245-255.
    • (2004) Metab Eng , vol.6 , Issue.4 , pp. 245-255
    • Maris, AJA.1    Konings, W.N.2    Dijken, JP.3    Pronk, J.T.4
  • 28
    • 27744527638 scopus 로고    scopus 로고
    • How reliable are thermodynamic feasibility statements of biochemical pathways
    • Maskow T, Stockar Uv. 2005. How reliable are thermodynamic feasibility statements of biochemical pathways? Biotechnol Bioeng 92(2):223-230.
    • (2005) Biotechnol Bioeng , vol.92 , Issue.2 , pp. 223-230
    • Maskow, T.1    Stockar, U.2
  • 29
    • 33644870880 scopus 로고    scopus 로고
    • Putative ABC transporter responsible for acetic acid resistance in acetobacter aceti
    • Nakano S, Fukaya M, Horinouchi S. 2006. Putative ABC transporter responsible for acetic acid resistance in acetobacter aceti. Appl Environ Microbiol 72(1):497-505.
    • (2006) Appl Environ Microbiol , vol.72 , Issue.1 , pp. 497-505
    • Nakano, S.1    Fukaya, M.2    Horinouchi, S.3
  • 30
    • 12244253037 scopus 로고    scopus 로고
    • Substrate and product inhibition of hydrogen production by the extreme thermophile, Caldicellulosiruptor saccharolyticus
    • Niel EWJv, Claassen PAM, Stams AJM. 2003. Substrate and product inhibition of hydrogen production by the extreme thermophile, Caldicellulosiruptor saccharolyticus. Biotechnol Bioeng 81(3):255-262.
    • (2003) Biotechnol Bioeng , vol.81 , Issue.3 , pp. 255-262
    • Niel, EWJ.1    Claassen, P.A.M.2    Stams, A.J.M.3
  • 32
    • 0032452737 scopus 로고    scopus 로고
    • The effects of fermentation acids on bacterial growth
    • Russell JB, Diez-Gonzalez F. 1997. The effects of fermentation acids on bacterial growth. Adv Microb Physiol 39:205-234.
    • (1997) Adv Microb Physiol , vol.39 , pp. 205-234
    • Russell, J.B.1    Diez-Gonzalez, F.2
  • 33
    • 0037934657 scopus 로고    scopus 로고
    • A simple energy-conserving system: Proton reduction coupled to proton translocation
    • Sapra R, Bagramyan K, Adams MWW. 2003. A simple energy-conserving system: Proton reduction coupled to proton translocation. Proc Natl Acad Sci USA 100(13):7545-7550.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.13 , pp. 7545-7550
    • Sapra, R.1    Bagramyan, K.2    Adams, M.W.W.3
  • 34
    • 67649413347 scopus 로고    scopus 로고
    • The iron-hydrogenase of thermotoga maritima utilizes ferredoxin and NADH synergistically: A new perspective on anaerobic hydrogen production
    • Schut GJ, Adams MWW. 2009. The iron-hydrogenase of thermotoga maritima utilizes ferredoxin and NADH synergistically: A new perspective on anaerobic hydrogen production. J Bacteriol 191(13):4451-4457.
    • (2009) J Bacteriol , vol.191 , Issue.13 , pp. 4451-4457
    • Schut, G.J.1    Adams, M.W.W.2
  • 36
    • 2242471038 scopus 로고    scopus 로고
    • Energetics and kinetics of lactate fermentation to acetate and propionate via methylmalonyl-CoA or acrylyl-CoA
    • Seeliger S, Janssen P, Schink B. 2002. Energetics and kinetics of lactate fermentation to acetate and propionate via methylmalonyl-CoA or acrylyl-CoA. FEMS Microbiol Lett 211(1):65-70.
    • (2002) FEMS Microbiol Lett , vol.211 , Issue.1 , pp. 65-70
    • Seeliger, S.1    Janssen, P.2    Schink, B.3
  • 38
    • 0029066951 scopus 로고
    • A variable-temperature direct electrochemical study of metalloproteins from hyperthermophilic microorganisms involved in hydrogen production from pyruvate
    • Smith ET, Blamey JM, Zhou ZH, Adams MWW. 1995. A variable-temperature direct electrochemical study of metalloproteins from hyperthermophilic microorganisms involved in hydrogen production from pyruvate. Biochemistry 34(21):7161-7169.
    • (1995) Biochemistry , vol.34 , Issue.21 , pp. 7161-7169
    • Smith, E.T.1    Blamey, J.M.2    Zhou, Z.H.3    Adams, M.W.W.4
  • 39
    • 4344700076 scopus 로고    scopus 로고
    • A multisubunit membrane-bound [NiFe] hydrogenase and an NADH-dependent Fe-only hydrogenase in the fermenting bacterium thermoanaerobacter tengcongensis
    • Soboh B, Linder D, Hedderich R. 2004. A multisubunit membrane-bound [NiFe] hydrogenase and an NADH-dependent Fe-only hydrogenase in the fermenting bacterium thermoanaerobacter tengcongensis. Microbiology 150(7):2451-2463.
    • (2004) Microbiology , vol.150 , Issue.7 , pp. 2451-2463
    • Soboh, B.1    Linder, D.2    Hedderich, R.3
  • 41
    • 67651202726 scopus 로고    scopus 로고
    • Electron transfer in syntrophic communities of anaerobic bacteria and archaea
    • Stams AJM, Plugge CM. 2009. Electron transfer in syntrophic communities of anaerobic bacteria and archaea. Nat Rev Microbiol 7(8):568-577.
    • (2009) Nat Rev Microbiol , vol.7 , Issue.8 , pp. 568-577
    • Stams, A.J.M.1    Plugge, C.M.2
  • 42
    • 34249932212 scopus 로고    scopus 로고
    • Influence of the pH on (open) mixed culture fermentation of glucose: A chemostat study
    • Temudo MF, Kleerebezem R, van Loosdrecht M. 2007. Influence of the pH on (open) mixed culture fermentation of glucose: A chemostat study. Biotechnol Bioeng 98(1):69-79.
    • (2007) Biotechnol Bioeng , vol.98 , Issue.1 , pp. 69-79
    • Temudo, M.F.1    Kleerebezem, R.2    van Loosdrecht, M.3
  • 43
    • 47549119041 scopus 로고    scopus 로고
    • Methanogenic archaea: Ecologically relevant differences in energy conservation
    • Thauer RK, Kaster AK, Seedorf H, Buckel W, Hedderich R. 2008. Methanogenic archaea: Ecologically relevant differences in energy conservation. Nat Rev Microbiol 6(8):579-591.
    • (2008) Nat Rev Microbiol , vol.6 , Issue.8 , pp. 579-591
    • Thauer, R.K.1    Kaster, A.K.2    Seedorf, H.3    Buckel, W.4    Hedderich, R.5
  • 44
    • 0027909730 scopus 로고
    • A thermodynamically based correlation for maintenance gibbs energy requirements in aerobic and anaerobic chemotrophic growth
    • Tijhuis L, Loosdrecht MCMV, Heijnen JJ. 1993. A thermodynamically based correlation for maintenance gibbs energy requirements in aerobic and anaerobic chemotrophic growth. Biotechnol Bioeng 42(4):509-519.
    • (1993) Biotechnol Bioeng , vol.42 , Issue.4 , pp. 509-519
    • Tijhuis, L.1    Loosdrecht, M.C.M.V.2    Heijnen, J.J.3
  • 45
    • 0022187188 scopus 로고
    • Glucose fermentation by Clostridium butyricum grown under a self generated gas atmosphere in chemostat culture
    • van Andel J, Zoutberg G, Crabbendam P, Breure A. 1985. Glucose fermentation by Clostridium butyricum grown under a self generated gas atmosphere in chemostat culture. Appl Microbiol Biotechnol 23(1):21-26.
    • (1985) Appl Microbiol Biotechnol , vol.23 , Issue.1 , pp. 21-26
    • van Andel, J.1    Zoutberg, G.2    Crabbendam, P.3    Breure, A.4
  • 46
    • 28444497004 scopus 로고    scopus 로고
    • Inhibition of biohydrogen production by undissociated acetic and butyric acids
    • Van Ginkel S, Logan BE. 2005a. Inhibition of biohydrogen production by undissociated acetic and butyric acids. Environ Sci Technol 39(23):9351-9356.
    • (2005) Environ Sci Technol , vol.39 , Issue.23 , pp. 9351-9356
    • Van Ginkel, S.1    Logan, B.E.2
  • 47
    • 24944432242 scopus 로고    scopus 로고
    • Increased biological hydrogen production with reduced organic loading
    • Van Ginkel SW, Logan B. 2005b. Increased biological hydrogen production with reduced organic loading. Water Res 39(16):3819-3826.
    • (2005) Water Res , vol.39 , Issue.16 , pp. 3819-3826
    • Van Ginkel, S.W.1    Logan, B.2
  • 48
    • 79952705331 scopus 로고    scopus 로고
    • Microbial production of bulk chemicals: Development of anaerobic processes
    • Weusthuis RA, Lamot I, van der Oost J, Sanders JPM. 2011. Microbial production of bulk chemicals: Development of anaerobic processes. Trends Biotechnol 29(4):153-158.
    • (2011) Trends Biotechnol , vol.29 , Issue.4 , pp. 153-158
    • Weusthuis, R.A.1    Lamot, I.2    van der Oost, J.3    Sanders, J.P.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.