메뉴 건너뛰기




Volumn 40, Issue 1, 2010, Pages 1-54

A generalized method for thermodynamic state analysis of environmental systems

Author keywords

Gibbs free energy; Microbial growth; Stoichiometry; Thermodynamics

Indexed keywords

DRIVING FORCES; ELECTRON TRANSFER; ENVIRONMENTAL SYSTEMS; GENERALIZED METHOD; INTEGRAL PART; MICROBIAL ECO SYSTEM; MICROBIAL GROWTH; MICROBIAL LIFE; MICROBIAL METABOLISM; NEW MATERIAL; STRAIGHT-FORWARD METHOD; THERMODYNAMIC NON-EQUILIBRIUM; THERMODYNAMIC STATE; THERMODYNAMIC SYSTEMS;

EID: 73949145190     PISSN: 10643389     EISSN: 15476537     Source Type: Journal    
DOI: 10.1080/10643380802000974     Document Type: Review
Times cited : (167)

References (42)
  • 1
    • 0035093350 scopus 로고    scopus 로고
    • Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and Bacteria
    • Amend, J.P., and Shock, E.L. (2001). Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and Bacteria. Fems Microbiology Reviews, 25(2), 175-243.
    • (2001) Fems Microbiology Reviews , vol.25 , Issue.2 , pp. 175-243
    • Amend, J.P.1    Shock, E.L.2
  • 2
    • 0034694882 scopus 로고    scopus 로고
    • Analysis of oxygenation reactions in a multi-substrate system\-a new approach for estimating substrate-specific true yields
    • Dahlen, E.P., and Rittmann, B.E. (2000). Analysis of oxygenation reactions in a multi-substrate system\-a new approach for estimating substrate-specific true yields. Biotechnology and Bioengineering, 70(6), 685-692.
    • (2000) Biotechnology and Bioengineering , vol.70 , Issue.6 , pp. 685-692
    • Dahlen, E.P.1    Rittmann, B.E.2
  • 4
    • 0035947513 scopus 로고    scopus 로고
    • A metabolic model for acetate uptake under anaerobic conditions by glycogen accumulating organisms: Stoichiometry, kinetics, and the effect of pH
    • Filipe, C.D.M., Daigger, G.T., and Grady, C.P.L. (2001). A metabolic model for acetate uptake under anaerobic conditions by glycogen accumulating organisms: Stoichiometry, kinetics, and the effect of pH. Biotechnology and Bioengineering, 76(1), 17-31.
    • (2001) Biotechnology and Bioengineering , vol.76 , Issue.1 , pp. 17-31
    • Filipe, C.D.M.1    Daigger, G.T.2    Grady, C.P.L.3
  • 5
    • 0025812675 scopus 로고
    • Microbial energetics applied to waste repositories
    • Hanselmann, K.W. (1991). Microbial energetics applied to waste repositories. Expe-rientia, 47(7), 645-687.
    • (1991) Expe-rientia , vol.47 , Issue.7 , pp. 645-687
    • Hanselmann, K.W.1
  • 6
    • 0035809238 scopus 로고    scopus 로고
    • Sensitivity analysis of a biofilm model describing a one-stage completely autotrophic nitrogen removal (CANON) process
    • Hao, X.D., Heijnen, J.J., and van Loosdrecht, M.C.M. (2002). Sensitivity analysis of a biofilm model describing a one-stage completely autotrophic nitrogen removal (CANON) process. Biotechnology and Bioengineering, 77(3), 266-277.
    • (2002) Biotechnology and Bioengineering , vol.77 , Issue.3 , pp. 266-277
    • Hao, X.D.1    Heijnen, J.J.2    Van Loosdrecht, M.C.M.3
  • 7
  • 9
    • 0027910029 scopus 로고
    • In search of a thermodynamic description of biomass yields for the chemotropic growth of microorganisms\-response
    • Heijnen, J.J., and Vandijken, J.P. (1993). In search of a thermodynamic description of biomass yields for the chemotropic growth of microorganisms\- response. Biotechnology and Bioengineering, 42(9), 1127-1130.
    • (1993) Biotechnology and Bioengineering , vol.42 , Issue.9 , pp. 1127-1130
    • Heijnen, J.J.1    Vandijken, J.P.2
  • 10
    • 0027112993 scopus 로고
    • A black-box mathematical-model to calculate autotrophic and heterotrophic biomass yields based on Gibbs energy-dissipation
    • Heijnen, J.J., Vanloosdrecht, M.C.M., and Tijhuis, L. (1992). A black-box mathematical-model to calculate autotrophic and heterotrophic biomass yields based on Gibbs energy-dissipation. Biotechnology and Bioengineering, 40(10), 1139-1154.
    • (1992) Biotechnology and Bioengineering , vol.40 , Issue.10 , pp. 1139-1154
    • Heijnen, J.J.1    Vanloosdrecht, M.C.M.2    Tijhuis, L.3
  • 12
    • 0032940452 scopus 로고    scopus 로고
    • Thermodynamic aspects of energy conservation by chemoli-totrophic sulfur bacteria in relation to the sulfur oxidation pathways
    • Kelly, D.P. (1999). Thermodynamic aspects of energy conservation by chemoli-totrophic sulfur bacteria in relation to the sulfur oxidation pathways. Arch. Microbiol., 171, 219-229.
    • (1999) Arch. Microbiol. , vol.171 , pp. 219-229
    • Kelly, D.P.1
  • 13
    • 0028805648 scopus 로고
    • The generation of metabolic energy by solute transport
    • Konings, W.N., Lolkema, J.S., and Poolman, B. (1995). The generation of metabolic energy by solute transport. Arch. Microbiol., 164(4), 235-242.
    • (1995) Arch. Microbiol. , vol.164 , Issue.4 , pp. 235-242
    • Konings, W.N.1    Lolkema, J.S.2    Poolman, B.3
  • 15
    • 0025701406 scopus 로고
    • Group contributions for estimating standard Gibbs energies of formation of biochemical compounds in aqueous solution
    • Mavrovouniotis, M.L. (1990). Group contributions for estimating standard Gibbs energies of formation of biochemical compounds in aqueous solution. Biotechnology and Bioengineering, 36, 1070-1082.
    • (1990) Biotechnology and Bioengineering , vol.36 , pp. 1070-1082
    • Mavrovouniotis, M.L.1
  • 16
    • 0026353854 scopus 로고
    • Estimation of standard Gibbs energy changes of bio-transformations
    • Mavrovouniotis, M.L. (1991). Estimation of standard Gibbs energy changes of bio-transformations. J. Biol. Chem., 266(22), 14440-14445.
    • (1991) J. Biol. Chem. , vol.266 , Issue.22 , pp. 14440-14445
    • Mavrovouniotis, M.L.1
  • 17
    • 0013808819 scopus 로고
    • Thermodynamics of biological synthesis and growth
    • McCarty, P.L. (1965). Thermodynamics of biological synthesis and growth. Air and Water Pollution, 9(10), 621-639.
    • (1965) Air and Water Pollution , vol.9 , Issue.10 , pp. 621-639
    • McCarty, P.L.1
  • 18
    • 0002624126 scopus 로고
    • Energetics of organic matter degradation
    • Mitchell, R. (ed.) New York: John Wiley & Sons, Inc.
    • McCarty, P.L. (1972). Energetics of organic matter degradation. In Mitchell, R. (ed.). Water pollution microbiology. New York: John Wiley & Sons, Inc., pp. 91-118.
    • (1972) Water Pollution Microbiology , pp. 91-118
    • McCarty, P.L.1
  • 19
    • 0016778533 scopus 로고
    • Stochiometry of biological reactions
    • McCarty, P.L. (1975). Stochiometry of biological reactions. Progr. Water Technol., 7, 157-172.
    • (1975) Progr. Water Technol. , vol.7 , pp. 157-172
    • McCarty, P.L.1
  • 20
    • 34249809703 scopus 로고    scopus 로고
    • Thermodynamic electron equivalents model for bacterial yield prediction: Modifications and comparative evaluations
    • McCarty, P.L. (2007). Thermodynamic electron equivalents model for bacterial yield prediction: Modifications and comparative evaluations. Biotechnology and Bio-engineering, 97(2), 377-388.
    • (2007) Biotechnology and Bio-engineering , vol.97 , Issue.2 , pp. 377-388
    • McCarty, P.L.1
  • 23
    • 0035916384 scopus 로고    scopus 로고
    • Energy model and metabolic flux analysis for autotrophic nitrifiers
    • Poughon, L., Dussap, C.G., and Gros, J.B. (2001). Energy model and metabolic flux analysis for autotrophic nitrifiers. Biotechnology and Bioengineering, 72(4), 416-433.
    • (2001) Biotechnology and Bioengineering , vol.72 , Issue.4 , pp. 416-433
    • Poughon, L.1    Dussap, C.G.2    Gros, J.B.3
  • 26
    • 0028926047 scopus 로고
    • Energetics of bacterial-growth\-balance of anabolic and catabolic reactions
    • Russell, J.B., and Cook, G.M. (1995). Energetics of bacterial-growth\- balance of anabolic and catabolic reactions. Microbiological Reviews, 59(1), 48-62.
    • (1995) Microbiological Reviews , vol.59 , Issue.1 , pp. 48-62
    • Russell, J.B.1    Cook, G.M.2
  • 27
    • 0030871461 scopus 로고    scopus 로고
    • Energetics of syntrophic cooperation in methanogenic degradation
    • Schink, B. (1997). Energetics of syntrophic cooperation in methanogenic degradation. Microbiology and Molecular Biology Reviews, 61(2), 262-280.
    • (1997) Microbiology and Molecular Biology Reviews , vol.61 , Issue.2 , pp. 262-280
    • Schink, B.1
  • 28
    • 0343907305 scopus 로고    scopus 로고
    • Enzyme activities in and energetics of acetate metabolism by the mesophilic syntrophically acetate-oxidizing anaerobe Clostridium ultunense
    • Schnurer, A., Svensson, B.H., and Schink, B. (1997). Enzyme activities in and energetics of acetate metabolism by the mesophilic syntrophically acetate-oxidizing anaerobe Clostridium ultunense. FEMS Microbiol. Lett., 154(2), 331-336.
    • (1997) FEMS Microbiol. Lett. , vol.154 , Issue.2 , pp. 331-336
    • Schnurer, A.1    Svensson, B.H.2    Schink, B.3
  • 30
    • 0001833934 scopus 로고
    • The search for correlation between theoretical and experimental growth yields
    • Stouthamer, A.H. (1979). The search for correlation between theoretical and experimental growth yields. International Review of Biochemistry, 21, 1-45.
    • (1979) International Review of Biochemistry , vol.21 , pp. 1-45
    • Stouthamer, A.H.1
  • 31
    • 0031762559 scopus 로고    scopus 로고
    • The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms
    • Strous, M., Heijnen, J.J., Kuenen, J.G., and Jetten, M.S.M. (1998). The sequencing batch reactor as a powerful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms. Applied Microbiology and Biotechnology, 50(5), 589-596.
    • (1998) Applied Microbiology and Biotechnology , vol.50 , Issue.5 , pp. 589-596
    • Strous, M.1    Heijnen, J.J.2    Kuenen, J.G.3    Jetten, M.S.M.4
  • 33
    • 0017343370 scopus 로고
    • Energy conservation in chemotropic anaerobic bacteria
    • Thauer, R.K., Jungermann, K., and Decker, K. (1977). Energy conservation in chemotropic anaerobic bacteria. Bacteriological Reviews, 41(1), 100-180.
    • (1977) Bacteriological Reviews , vol.41 , Issue.1 , pp. 100-180
    • Thauer, R.K.1    Jungermann, K.2    Decker, K.3
  • 34
    • 0027909730 scopus 로고
    • A thermodynamically based correlation for maintenance Gibbs energy\-requirements in aerobic and anaerobic chemotropic growth
    • Tijhuis, L., Vanloosdrecht, M.C.M., and Heijnen, J.J. (1993). A thermodynamically based correlation for maintenance Gibbs energy\-requirements in aerobic and anaerobic chemotropic growth. Biotechnology and Bioengineering, 42(4), 509-519.
    • (1993) Biotechnology and Bioengineering , vol.42 , Issue.4 , pp. 509-519
    • Tijhuis, L.1    Vanloosdrecht, M.C.M.2    Heijnen, J.J.3
  • 35
    • 0031554870 scopus 로고    scopus 로고
    • Kinetic modeling of poly(beta-hydroxybutyrate) production and consumption by Paracoccus pantotrophus under dynamic substrate supply
    • vanAalastvanLeeuwen, M.A., Pot, M.A., vanLoosdrecht, M.C.M., and Heijnen, J.J. (1997). Kinetic modeling of poly(beta-hydroxybutyrate) production and consumption by Paracoccus pantotrophus under dynamic substrate supply. Biotechnology and Bioengineering 55(5) 773-782.
    • (1997) Biotechnology and Bioengineering , vol.55 , Issue.5 , pp. 773-782
    • Vanaalastvanleeuwen, M.A.1    Pot, M.A.2    Vanloosdrecht, M.C.M.3    Heijnen, J.J.4
  • 36
    • 0035543906 scopus 로고    scopus 로고
    • Thermodynamic yield predictions for biodegradation through oxygenase activation reactions
    • VanBriesen, J.M. (2001). Thermodynamic yield predictions for biodegradation through oxygenase activation reactions. Biodegradation, 12(4), 263-279.
    • (2001) Biodegradation , vol.12 , Issue.4 , pp. 263-279
    • Vanbriesen, J.M.1
  • 37
    • 0036439074 scopus 로고    scopus 로고
    • Evaluation of methods to predict bacterial yield using thermodynamics
    • VanBriesen, J.M. (2002). Evaluation of methods to predict bacterial yield using thermodynamics. Biodegradation, 13(3), 171-190.
    • (2002) Biodegradation , vol.13 , Issue.3 , pp. 171-190
    • Vanbriesen, J.M.1
  • 38
    • 0034606712 scopus 로고    scopus 로고
    • Mathematical description of microbiological reactions involving intermediates
    • VanBriesen, J.M., and Rittmann, B.E. (2000). Mathematical description of microbiological reactions involving intermediates. Biotechnology and Bioengineering, 67(1), 35-52.
    • (2000) Biotechnology and Bioengineering , vol.67 , Issue.1 , pp. 35-52
    • Vanbriesen, J.M.1    Rittmann, B.E.2
  • 39
    • 0034439467 scopus 로고    scopus 로고
    • Microbial energetics and stoichiometry for biodegradation of aromatic compounds involving oxygenation reactions
    • Woo, S.H., and Rittmann, B.E. (2000). Microbial energetics and stoichiometry for biodegradation of aromatic compounds involving oxygenation reactions. Biodegradation, 11(4), 213-227.
    • (2000) Biodegradation , vol.11 , Issue.4 , pp. 213-227
    • Woo, S.H.1    Rittmann, B.E.2
  • 40
    • 30944451942 scopus 로고    scopus 로고
    • Expanded thermodynamic model for micro-bial true yield prediction
    • Xiao, J.H., and VanBriesen, J.M. (2006). Expanded thermodynamic model for micro-bial true yield prediction. Biotechnology and Bioengineering, 93(1), 110-121.
    • (2006) Biotechnology and Bioengineering , vol.93 , Issue.1 , pp. 110-121
    • Xiao, J.H.1    Vanbriesen, J.M.2
  • 41
    • 0037026965 scopus 로고    scopus 로고
    • Yield prediction and stoichiometry of multi-step biodegradation reactions involving oxygenation
    • Yuan, Z.W., and VanBriesen, J.M. (2002). Yield prediction and stoichiometry of multi-step biodegradation reactions involving oxygenation. Biotechnology and Bioengineering, 80(1), 100-113.
    • (2002) Biotechnology and Bioengineering , vol.80 , Issue.1 , pp. 100-113
    • Yuan, Z.W.1    Vanbriesen, J.M.2
  • 42
    • 0013218367 scopus 로고    scopus 로고
    • Metabolic model for glycogen-accumulating organisms in anaerobic/aerobic activated sludge systems
    • DOI 10.1002/bit.10455
    • Zeng, R.J., van Loosdrecht, M.C.M., Yuan, Z.G., and Keller, J. (2003). Metabolic model for glycogen-accumulating organisms in anaerobic/aerobic activated sludge systems. Biotechnology and Bioengineering, 81(1), 92-105. (Pubitemid 38181642)
    • (2003) Biotechnology and Bioengineering , vol.81 , Issue.1 , pp. 92-105
    • Zeng, R.J.1    Van Loosdrecht, M.C.M.2    Yuan, Z.3    Keller, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.