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Volumn 44, Issue 2, 2013, Pages 573-580

A similarity distance of diversity measure for discriminating mesophilic and thermophilic proteins

Author keywords

Amino acids; Increment of diversity; K nearest neighbor; Prediction performance; Thermophilic protein

Indexed keywords

MESOPHILIC PROTEIN; PROTEIN; THERMOPHILIC PROTEIN; UNCLASSIFIED DRUG;

EID: 84878375446     PISSN: 09394451     EISSN: 14382199     Source Type: Journal    
DOI: 10.1007/s00726-012-1374-z     Document Type: Article
Times cited : (33)

References (58)
  • 3
    • 0034693042 scopus 로고    scopus 로고
    • Structural and genomic correlates of hyperthermostability
    • 10940293 1:CAS:528:DC%2BD3cXnslOisLc%3D 10.1074/jbc.C000497200
    • Cambillau C, Claverie JM (2000) Structural and genomic correlates of hyperthermostability. J Biol Chem 275:32383-32386
    • (2000) J Biol Chem , vol.275 , pp. 32383-32386
    • Cambillau, C.1    Claverie, J.M.2
  • 4
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space
    • 7567954 1:CAS:528:DyaK2MXls12rsb0%3D 10.1002/prot.340210406
    • Chou KC (1995) A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Proteins Struct Funct Genet 21:319-344
    • (1995) Proteins Struct Funct Genet , vol.21 , pp. 319-344
    • Chou, K.C.1
  • 5
    • 33747197197 scopus 로고    scopus 로고
    • Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers
    • 16889410 1:CAS:528:DC%2BD28XmvVeitr0%3D 10.1021/pr060167c
    • Chou KC, Shen HB (2006) Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers. J Proteome Res 5:1888-1897
    • (2006) J Proteome Res , vol.5 , pp. 1888-1897
    • Chou, K.C.1    Shen, H.B.2
  • 6
    • 34249318001 scopus 로고    scopus 로고
    • Euk-mPLoc: A fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites
    • 17397210 1:CAS:528:DC%2BD2sXjs1SrsbY%3D 10.1021/pr060635i
    • Chou KC, Shen HB (2007a) Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites. J Proteome Res 6:1728-1734
    • (2007) J Proteome Res , vol.6 , pp. 1728-1734
    • Chou, K.C.1    Shen, H.B.2
  • 7
    • 33846605183 scopus 로고    scopus 로고
    • Large-scale plant protein subcellular location prediction
    • 16983686 1:CAS:528:DC%2BD2sXht1Slu7c%3D 10.1002/jcb.21096
    • Chou KC, Shen HB (2007b) Large-scale plant protein subcellular location prediction. J Cell Biochem 100:665-678
    • (2007) J Cell Biochem , vol.100 , pp. 665-678
    • Chou, K.C.1    Shen, H.B.2
  • 8
    • 34548606295 scopus 로고    scopus 로고
    • Review: Recent progresses in protein subcellular location prediction
    • 17698024 1:CAS:528:DC%2BD2sXhtVOmur%2FF 10.1016/j.ab.2007.07.006
    • Chou KC, Shen HB (2007c) Review: recent progresses in protein subcellular location prediction. Anal Biochem 370:1-16
    • (2007) Anal Biochem , vol.370 , pp. 1-16
    • Chou, K.C.1    Shen, H.B.2
  • 9
    • 0034191064 scopus 로고    scopus 로고
    • The stability of thermophilic proteins: A study based on comprehensive genome comparison
    • 11793224 1:CAS:528:DC%2BD3cXktVGhtLc%3D
    • Das R, Gerstein M (2000) The stability of thermophilic proteins: a study based on comprehensive genome comparison. Funct Integr Genomics 1:76-88
    • (2000) Funct Integr Genomics , vol.1 , pp. 76-88
    • Das, R.1    Gerstein, M.2
  • 10
    • 0032573431 scopus 로고    scopus 로고
    • The stability of salt bridges at high temperatures: Implications for hyperthermophilic proteins
    • 9813132 1:CAS:528:DyaK1cXnvVequ7s%3D 10.1006/jmbi.1998.2159
    • Elcock AH (1998) The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins. J Mol Biol 284:489-502
    • (1998) J Mol Biol , vol.284 , pp. 489-502
    • Elcock, A.H.1
  • 11
    • 2542451914 scopus 로고    scopus 로고
    • Preferred amino acids and thermostability
    • 15011142 1:CAS:528:DC%2BD2cXltVSlt74%3D
    • Farias ST, Bonato MC (2003) Preferred amino acids and thermostability. Genet Mol Res 2:383-393
    • (2003) Genet Mol Res , vol.2 , pp. 383-393
    • Farias, S.T.1    Bonato, M.C.2
  • 12
    • 0035876479 scopus 로고    scopus 로고
    • Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria
    • 11399062 1:CAS:528:DC%2BD3MXkt1SgsLY%3D 10.1006/jmbi.2001.4718
    • Fukuchi S, Nishikawa K (2001) Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria. J Mol Biol 309:835-843
    • (2001) J Mol Biol , vol.309 , pp. 835-843
    • Fukuchi, S.1    Nishikawa, K.2
  • 13
    • 23644435930 scopus 로고    scopus 로고
    • Motifs in outer membrane protein sequences: Applications for discrimination
    • 1:CAS:528:DC%2BD2MXnslymsbc%3D 10.1016/j.bpc.2005.04.005
    • Gromiha MM (2005) Motifs in outer membrane protein sequences: applications for discrimination. Biophy Chem 117:65-71
    • (2005) Biophy Chem , vol.117 , pp. 65-71
    • Gromiha, M.M.1
  • 14
    • 39749148317 scopus 로고    scopus 로고
    • Discrimination of mesophilic and thermophilic proteins using machine learning algorithms
    • 17876820 1:CAS:528:DC%2BD1cXisFyrt7k%3D 10.1002/prot.21616
    • Gromiha MM, Suresh MX (2008) Discrimination of mesophilic and thermophilic proteins using machine learning algorithms. Proteins 70:1274-1279
    • (2008) Proteins , vol.70 , pp. 1274-1279
    • Gromiha, M.M.1    Suresh, M.X.2
  • 15
    • 0032715527 scopus 로고    scopus 로고
    • Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins
    • 10584295 1:CAS:528:DyaK1MXntVCgs7g%3D 10.1016/S0301-4622(99)00103-9
    • Gromiha MM, Oobatake M, Sarai A (1999) Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins. Biophys Chem 82:51-67
    • (1999) Biophys Chem , vol.82 , pp. 51-67
    • Gromiha, M.M.1    Oobatake, M.2    Sarai, A.3
  • 16
    • 0033616712 scopus 로고    scopus 로고
    • Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
    • 10097079 1:CAS:528:DyaK1MXjslCitLY%3D 10.1073/pnas.96.7.3578
    • Haney PJ, Badger JH, Buldak GL, Reich CI, Woese CR, Olsen GJ (1999) Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species. Proc Natl Acad Sci USA 96:3578-3583
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 3578-3583
    • Haney, P.J.1    Badger, J.H.2    Buldak, G.L.3    Reich, C.I.4    Woese, C.R.5    Olsen, G.J.6
  • 17
    • 0033768088 scopus 로고    scopus 로고
    • Towards the ecology of hyperthermophiles: Biotopes, new isolation strategies and novel metabolic properties
    • 11077154 1:CAS:528:DC%2BD3cXotVCksLk%3D 10.1111/j.1574-6976.2000.tb00562. x
    • Huber R, Huber H, Stetter KO (2000) Towards the ecology of hyperthermophiles: biotopes, new isolation strategies and novel metabolic properties. FEMS Microbiol Rev 24:615-623
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 615-623
    • Huber, R.1    Huber, H.2    Stetter, K.O.3
  • 18
    • 0031731672 scopus 로고    scopus 로고
    • Proteins from thermophilic and mesophilic organisms essentially do not differ in packing
    • 9862205 1:CAS:528:DyaK1cXnvVCmsLw%3D 10.1093/protein/11.10.867
    • Karshikoff A, Ladenstein R (1998) Proteins from thermophilic and mesophilic organisms essentially do not differ in packing. Protein Eng 11:867-872
    • (1998) Protein Eng , vol.11 , pp. 867-872
    • Karshikoff, A.1    Ladenstein, R.2
  • 20
    • 0034017055 scopus 로고    scopus 로고
    • Factors enhancing protein thermostability
    • 10775659 1:CAS:528:DC%2BD3cXjtlKmur8%3D 10.1093/protein/13.3.179
    • Kumar S, Tsai CJ, Nussinov R (2000) Factors enhancing protein thermostability. Protein Eng 13:179-191
    • (2000) Protein Eng , vol.13 , pp. 179-191
    • Kumar, S.1    Tsai, C.J.2    Nussinov, R.3
  • 21
    • 0018262333 scopus 로고
    • The measure of diversity
    • 10.1016/0022-5193(78)90302-8
    • Laxton RR (1978) The measure of diversity. J Theor Biol 71:51-67
    • (1978) J Theor Biol , vol.71 , pp. 51-67
    • Laxton, R.R.1
  • 22
    • 77953026193 scopus 로고    scopus 로고
    • Distance-dependent statistical potentials for discriminating thermophilic and mesophilic proteins
    • 20451495 1:CAS:528:DC%2BC3cXntFSms70%3D 10.1016/j.bbrc.2010.05.005
    • Li Y, Fang J (2010) Distance-dependent statistical potentials for discriminating thermophilic and mesophilic proteins. Biochem Biophys Res Commun 396:736-741
    • (2010) Biochem Biophys Res Commun , vol.396 , pp. 736-741
    • Li, Y.1    Fang, J.2
  • 23
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • 16731699 1:CAS:528:DC%2BD28XmsVent7s%3D 10.1093/bioinformatics/btl158
    • Li WZ, Godzik A (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22:1658-1659
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.Z.1    Godzik, A.2
  • 24
    • 38149120433 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach
    • Li FM, Li QZ (2008) Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach. Amino Acids 34:119-125
    • (2008) Amino Acids , vol.34 , pp. 119-125
    • Li, F.M.1    Li, Q.Z.2
  • 25
    • 0035824718 scopus 로고    scopus 로고
    • The prediction of the structural class of protein: Application of the measure of diversity
    • 11735294 1:CAS:528:DC%2BD3MXovV2msbs%3D 10.1006/jtbi.2001.2441
    • Li QZ, Lu ZQ (2001) The prediction of the structural class of protein: application of the measure of diversity. J Theor Biol 213:493-502
    • (2001) J Theor Biol , vol.213 , pp. 493-502
    • Li, Q.Z.1    Lu, Z.Q.2
  • 26
    • 17644365489 scopus 로고    scopus 로고
    • Structural features of thermozymes
    • 15848038 1:CAS:528:DC%2BD2MXjsVehu7Y%3D 10.1016/j.biotechadv.2005.01.002
    • Li WF, Zhou XX, Lu P (2005) Structural features of thermozymes. Biotechnol Adv 23:271-281
    • (2005) Biotechnol Adv , vol.23 , pp. 271-281
    • Li, W.F.1    Zhou, X.X.2    Lu, P.3
  • 27
    • 14644397188 scopus 로고    scopus 로고
    • The amino acid coupling patterns in thermophilic proteins
    • 15688447 1:CAS:528:DC%2BD2MXitFynsrc%3D 10.1002/prot.20386
    • Liang HK, Huang CM, Ko MT, Hwang JK (2005) The amino acid coupling patterns in thermophilic proteins. Proteins 59:58-63
    • (2005) Proteins , vol.59 , pp. 58-63
    • Liang, H.K.1    Huang, C.M.2    Ko, M.T.3    Hwang, J.K.4
  • 28
    • 78650209947 scopus 로고    scopus 로고
    • Prediction of thermophilic proteins using feature selection technique
    • 1:CAS:528:DC%2BC3cXhsF2is7%2FM 10.1016/j.mimet.2010.10.013
    • Lin H, Chen W (2011) Prediction of thermophilic proteins using feature selection technique. J Microbiol Meth 84:67-70
    • (2011) J Microbiol Meth , vol.84 , pp. 67-70
    • Lin, H.1    Chen, W.2
  • 29
    • 34249807035 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components
    • 17330882 1:CAS:528:DC%2BD2sXlslSgs7w%3D 10.1002/jcc.20554
    • Lin H, Li QZ (2007) Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components. J Comput Chem 28:1463-1466
    • (2007) J Comput Chem , vol.28 , pp. 1463-1466
    • Lin, H.1    Li, Q.Z.2
  • 30
    • 46249096540 scopus 로고    scopus 로고
    • Predicting protein thermostability changes from sequence upon multiple mutations
    • 18586713 1:CAS:528:DC%2BD1cXnvV2rsbY%3D 10.1093/bioinformatics/btn166
    • Montanucci L, Fariselli P, Martelli PL, Casadio R (2008) Predicting protein thermostability changes from sequence upon multiple mutations. Bioinformatics 24:i190-i195
    • (2008) Bioinformatics , vol.24
    • Montanucci, L.1    Fariselli, P.2    Martelli, P.L.3    Casadio, R.4
  • 31
    • 0001338954 scopus 로고    scopus 로고
    • Simplified amino acid alphabets for protein fold recognition and implications for folding
    • 10775656 1:CAS:528:DC%2BD3cXjtlKmtbY%3D 10.1093/protein/13.3.149
    • Murphy LR, Wallqvist A, Levy RM (2000) Simplified amino acid alphabets for protein fold recognition and implications for folding. Protein Eng 13:149-152
    • (2000) Protein Eng , vol.13 , pp. 149-152
    • Murphy, L.R.1    Wallqvist, A.2    Levy, R.M.3
  • 32
    • 84862775250 scopus 로고    scopus 로고
    • Detecting thermophilic proteins through selecting amino acid and dipeptide composition features
    • 21547362 1:CAS:528:DC%2BC38XlsFertLc%3D 10.1007/s00726-011-0923-1
    • Nakariyakul S, Liu ZP, Chen L (2012) Detecting thermophilic proteins through selecting amino acid and dipeptide composition features. Amino Acids 42:1947-1953
    • (2012) Amino Acids , vol.42 , pp. 1947-1953
    • Nakariyakul, S.1    Liu, Z.P.2    Chen, L.3
  • 33
    • 0016771835 scopus 로고
    • Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2
    • 1143325 1:CAS:528:DyaE2MXkslertrw%3D 10.1038/255256a0
    • Perutz MF, Raidt H (1975) Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2. Nature 255:256-259
    • (1975) Nature , vol.255 , pp. 256-259
    • Perutz, M.F.1    Raidt, H.2
  • 34
    • 0035782661 scopus 로고    scopus 로고
    • Protein design-where we were, where we are, where we're going
    • 1:CAS:528:DC%2BD3MXms1altrg%3D 10.1006/jsbi.2001.4349
    • Pokala N, Handel TM (2001) Protein design-where we were, where we are, where we're going. J Struct Biolo 134:269-281
    • (2001) J Struct Biolo , vol.134 , pp. 269-281
    • Pokala, N.1    Handel, T.M.2
  • 35
    • 32044454841 scopus 로고    scopus 로고
    • Effective factors in thermostability of thermophilic proteins
    • 16253416 1:CAS:528:DC%2BD28Xhtlehsbc%3D 10.1016/j.bpc.2005.09.018
    • Sadeghi M, Naderi-Manesh H, Zarrabi M, Ranjbar B (2006) Effective factors in thermostability of thermophilic proteins. Biophys Chem 119:256-270
    • (2006) Biophys Chem , vol.119 , pp. 256-270
    • Sadeghi, M.1    Naderi-Manesh, H.2    Zarrabi, M.3    Ranjbar, B.4
  • 36
    • 33745104981 scopus 로고    scopus 로고
    • Activity based proteomics: Enzymatic activity profiling in complex proteomes
    • 16773240 1:CAS:528:DC%2BD28Xls1egsro%3D 10.1007/s00726-006-0305-2
    • Schmidinger H, Hermetter A, Birner-Gruenberger R (2006) Activity based proteomics: enzymatic activity profiling in complex proteomes. Amino Acids 30:333-350
    • (2006) Amino Acids , vol.30 , pp. 333-350
    • Schmidinger, H.1    Hermetter, A.2    Birner-Gruenberger, R.3
  • 37
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • Shannon CE (1948) A mathematical theory of communication. Bell Syst Tech J 27:379-423
    • (1948) Bell Syst Tech J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 38
    • 22144487766 scopus 로고    scopus 로고
    • Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo amino acid composition to predict membrane protein types
    • 16002049 1:CAS:528:DC%2BD2MXmt1aqsLw%3D 10.1016/j.bbrc.2005.06.087
    • Shen HB, Chou KC (2005) Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo amino acid composition to predict membrane protein types. Biochem Biophys Res Commun 334:288-292
    • (2005) Biochem Biophys Res Commun , vol.334 , pp. 288-292
    • Shen, H.B.1    Chou, K.C.2
  • 39
    • 33747880465 scopus 로고    scopus 로고
    • Ensemble classifier for protein fold pattern recognition
    • 16672258 1:CAS:528:DC%2BD28Xotl2rsLY%3D 10.1093/bioinformatics/btl170
    • Shen HB, Chou KC (2006) Ensemble classifier for protein fold pattern recognition. Bioinformatics 22:1717-1722
    • (2006) Bioinformatics , vol.22 , pp. 1717-1722
    • Shen, H.B.1    Chou, K.C.2
  • 40
    • 33847080827 scopus 로고    scopus 로고
    • Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
    • 17244638 1:CAS:528:DC%2BD2sXhvFWmtr8%3D 10.1093/protein/gzl053
    • Shen HB, Chou KC (2007a) Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins. Protein Eng Des Sel 20:39-46
    • (2007) Protein Eng des Sel , vol.20 , pp. 39-46
    • Shen, H.B.1    Chou, K.C.2
  • 41
    • 35348973511 scopus 로고    scopus 로고
    • EzyPred: A top-down approach for predicting enzyme functional classes and subclasses
    • 17931599 1:CAS:528:DC%2BD2sXht1aktbvF 10.1016/j.bbrc.2007.09.098
    • Shen HB, Chou KC (2007b) EzyPred: a top-down approach for predicting enzyme functional classes and subclasses. Biochem Biophys Res Commun 364:53-59
    • (2007) Biochem Biophys Res Commun , vol.364 , pp. 53-59
    • Shen, H.B.1    Chou, K.C.2
  • 42
    • 22144498433 scopus 로고    scopus 로고
    • Using supervised fuzzy clustering to predict protein structural classes
    • 16023077 1:CAS:528:DC%2BD2MXmsVOgurg%3D 10.1016/j.bbrc.2005.06.128
    • Shen HB, Yang J, Liu XJ, Chou KC (2005) Using supervised fuzzy clustering to predict protein structural classes. Biochem Biophys Res Commun 334:577-581
    • (2005) Biochem Biophys Res Commun , vol.334 , pp. 577-581
    • Shen, H.B.1    Yang, J.2    Liu, X.J.3    Chou, K.C.4
  • 43
    • 33748150984 scopus 로고    scopus 로고
    • Fuzzy KNN for predicting membrane protein types from pseudo amino acid composition
    • 16197963 1:CAS:528:DC%2BD28Xjs1Knt70%3D 10.1016/j.jtbi.2005.08.016
    • Shen HB, Yang J, Chou KC (2006) Fuzzy KNN for predicting membrane protein types from pseudo amino acid composition. J Theor Biol 240:9-13
    • (2006) J Theor Biol , vol.240 , pp. 9-13
    • Shen, H.B.1    Yang, J.2    Chou, K.C.3
  • 44
    • 0037931826 scopus 로고    scopus 로고
    • Genomic correlates of hyperthermostability, an update
    • 12600994 1:CAS:528:DC%2BD3sXjsVKmsrY%3D 10.1074/jbc.M301327200
    • Suhre K, Claverie JM (2003) Genomic correlates of hyperthermostability, an update. J Biol Chem 278:17198-17202
    • (2003) J Biol Chem , vol.278 , pp. 17198-17202
    • Suhre, K.1    Claverie, J.M.2
  • 45
    • 0039116206 scopus 로고    scopus 로고
    • Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: Results of a comprehensive survey
    • 1:CAS:528:DC%2BD3cXjsleqtb4%3D 10.1016/S0969-2126(00)00133-7
    • Szilagyi A, Zavodszky P (2000) Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey. Struct Fold Des 8:493-504
    • (2000) Struct Fold des , vol.8 , pp. 493-504
    • Szilagyi, A.1    Zavodszky, P.2
  • 46
    • 0033538553 scopus 로고    scopus 로고
    • Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability
    • 10390356 1:CAS:528:DyaK1MXktFehsb8%3D 10.1006/jmbi.1999.2889
    • Thompson MJ, Eisenberg D (1999) Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability. J Mol Biol 290:595-604
    • (1999) J Mol Biol , vol.290 , pp. 595-604
    • Thompson, M.J.1    Eisenberg, D.2
  • 47
    • 0035098779 scopus 로고    scopus 로고
    • Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability
    • 11238984 1:CAS:528:DC%2BD3MXisFyms74%3D 10.1128/MMBR.65.1.1-43.2001
    • Vieille C, Zeikus GJ (2001) Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability. Microbiol Mol Biol Rev 65:1-43
    • (2001) Microbiol Mol Biol Rev , vol.65 , pp. 1-43
    • Vieille, C.1    Zeikus, G.J.2
  • 48
    • 0035214616 scopus 로고    scopus 로고
    • Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase
    • 11733026 1:STN:280:DC%2BD3MnoslWgsg%3D%3D 10.1046/j.0014-2956.2001.02587. x
    • Vieille C, Epting KL, Kelly RM, Zeikus JG (2001) Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase. Eur J Biochem 268:6291-6301
    • (2001) Eur J Biochem , vol.268 , pp. 6291-6301
    • Vieille, C.1    Epting, K.L.2    Kelly, R.M.3    Zeikus, J.G.4
  • 49
    • 79955751504 scopus 로고    scopus 로고
    • Prediction of thermophilic protein with pseudo amino acid composition: An approach from combined feature selection and reduction
    • 21413920 1:CAS:528:DC%2BC3MXnvVGru74%3D 10.2174/092986611795446085
    • Wang D, Yang L, Fu Z, Xia J (2011) Prediction of thermophilic protein with pseudo amino acid composition: an approach from combined feature selection and reduction. Protein Pept Lett 18:684-689
    • (2011) Protein Pept Lett , vol.18 , pp. 684-689
    • Wang, D.1    Yang, L.2    Fu, Z.3    Xia, J.4
  • 50
    • 33846519263 scopus 로고    scopus 로고
    • Protein and DNA sequence determinants of thermophilic adaptation
    • 17222055 10.1371/journal.pcbi.0030005
    • Zeldovich KB, Berezovsky IN, Shakhnovich EI (2007) Protein and DNA sequence determinants of thermophilic adaptation. PLoS Comput Biol 3:e5
    • (2007) PLoS Comput Biol , vol.3 , pp. 5
    • Zeldovich, K.B.1    Berezovsky, I.N.2    Shakhnovich, E.I.3
  • 51
    • 33646789420 scopus 로고    scopus 로고
    • Application of amino acid distribution along the sequence for discriminating mesophilic and thermophilic proteins
    • 1:CAS:528:DC%2BD28XltFCktrw%3D 10.1016/j.procbio.2006.03.026
    • Zhang GY, Fang BS (2006a) Application of amino acid distribution along the sequence for discriminating mesophilic and thermophilic proteins. Proc Biochem 41:1792-1798
    • (2006) Proc Biochem , vol.41 , pp. 1792-1798
    • Zhang, G.Y.1    Fang, B.S.2
  • 52
    • 32244442728 scopus 로고    scopus 로고
    • Discrimination of thermophilic and mesophilic proteins via pattern recognition methods
    • 1:CAS:528:DC%2BD28Xhtlaru70%3D 10.1016/j.procbio.2005.09.003
    • Zhang GY, Fang BS (2006b) Discrimination of thermophilic and mesophilic proteins via pattern recognition methods. Proc Biochem 41:552-556
    • (2006) Proc Biochem , vol.41 , pp. 552-556
    • Zhang, G.Y.1    Fang, B.S.2
  • 53
    • 37849186878 scopus 로고    scopus 로고
    • LogitBoost classifier for discriminating thermophilic and mesophilic proteins
    • 17045354 1:CAS:528:DC%2BD28Xht1Klsr%2FF 10.1016/j.jbiotec.2006.07.020
    • Zhang GY, Fang BS (2007) LogitBoost classifier for discriminating thermophilic and mesophilic proteins. J Biotechnol 127:417-424
    • (2007) J Biotechnol , vol.127 , pp. 417-424
    • Zhang, G.Y.1    Fang, B.S.2
  • 54
    • 36348994911 scopus 로고    scopus 로고
    • Prediction protein structural classes with pseudo-amino acid composition: Approximate entropy and hydrophobicity pattern
    • 17959199 1:CAS:528:DC%2BD2sXhsVSmtb%2FN 10.1016/j.jtbi.2007.09.014
    • Zhang TL, Ding YS, Chou KC (2008) Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern. J Theor Biol 250:186-193
    • (2008) J Theor Biol , vol.250 , pp. 186-193
    • Zhang, T.L.1    Ding, Y.S.2    Chou, K.C.3
  • 55
    • 38149111171 scopus 로고    scopus 로고
    • Differences in amino acids composition and coupling patterns between mesophilic and thermophilic proteins
    • 17710363 1:CAS:528:DC%2BD1cXlt1Clsw%3D%3D 10.1007/s00726-007-0589-x
    • Zhou XX, Wang YB, Pan YJ, Li WF (2008) Differences in amino acids composition and coupling patterns between mesophilic and thermophilic proteins. Amino Acids 34:25-33
    • (2008) Amino Acids , vol.34 , pp. 25-33
    • Zhou, X.X.1    Wang, Y.B.2    Pan, Y.J.3    Li, W.F.4
  • 56
    • 70349333875 scopus 로고    scopus 로고
    • Using reduced amino acid composition to predict defensin family and subfamily: Integrating similarity measure and structural alphabet
    • 19591890 1:CAS:528:DC%2BD1MXhtFyqtrfL 10.1016/j.peptides.2009.06.032
    • Zuo YC, Li QZ (2009) Using reduced amino acid composition to predict defensin family and subfamily: Integrating similarity measure and structural alphabet. Peptides 30:1788-1793
    • (2009) Peptides , vol.30 , pp. 1788-1793
    • Zuo, Y.C.1    Li, Q.Z.2
  • 57
    • 77951666318 scopus 로고    scopus 로고
    • Using K-minimum increment of diversity to predict secretory proteins of malaria parasite based on groupings of amino acids
    • 19387791 1:CAS:528:DC%2BC3cXjt1eqsr0%3D 10.1007/s00726-009-0292-1
    • Zuo YC, Li QZ (2010) Using K-minimum increment of diversity to predict secretory proteins of malaria parasite based on groupings of amino acids. Amino Acids 38:859-867
    • (2010) Amino Acids , vol.38 , pp. 859-867
    • Zuo, Y.C.1    Li, Q.Z.2
  • 58
    • 79451472198 scopus 로고    scopus 로고
    • Identification of TATA and TATA-less promoters in plant genomes by integrating diversity measure, GC-Skew and DNA geometric flexibility
    • 21112384 1:CAS:528:DC%2BC3MXhsFars74%3D 10.1016/j.ygeno.2010.11.002
    • Zuo YC, Li QZ (2011) Identification of TATA and TATA-less promoters in plant genomes by integrating diversity measure, GC-Skew and DNA geometric flexibility. Genomics 97:112-120
    • (2011) Genomics , vol.97 , pp. 112-120
    • Zuo, Y.C.1    Li, Q.Z.2


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