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Volumn 38, Issue 3, 2010, Pages 859-867

Using K-minimum increment of diversity to predict secretory proteins of malaria parasite based on groupings of amino acids

Author keywords

Amino acid and dipeptide composition; Increment of diversity; Prediction performance; Reduced amino acids alphabets; Secretory proteins

Indexed keywords

SECRETORY PROTEIN;

EID: 77951666318     PISSN: 09394451     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00726-009-0292-1     Document Type: Article
Times cited : (39)

References (82)
  • 1
    • 3042692704 scopus 로고    scopus 로고
    • Feature-based prediction of non-classical and leaderless protein secretion
    • DOI 10.1093/protein/gzh037
    • JD Bendtsen LJ Jensen N Blom G von Heijne S Brunak 2004 Feature-based prediction of non-classical and leaderless protein secretion Protein Eng Des Sel 17 349 356 10.1093/protein/gzh037 10.1093/protein/gzh037 1:CAS:528: DC%2BD2cXntFagtrY%3D 15115854 (Pubitemid 39093515)
    • (2004) Protein Engineering, Design and Selection , vol.17 , Issue.4 , pp. 349-356
    • Bendtsen, J.D.1    Jensen, L.J.2    Blom, N.3    Von Heijne, G.4    Brunak, S.5
  • 2
    • 33644840330 scopus 로고    scopus 로고
    • Assessing a novel approach for predicting local 3D protein structures from sequence
    • DOI 10.1002/prot.20815
    • C Benros AG de Brevern C Etchebest S Hazout 2006 Assessing a novel approach for predicting local 3D protein structures from sequence Proteins 62 680 865 10.1002/prot.20815 10.1002/prot.20815 (Pubitemid 43364152)
    • (2006) Proteins: Structure, Function and Genetics , vol.62 , Issue.4 , pp. 865-880
    • Benros, C.1    De Brevern, A.G.2    Etchebest, C.3    Hazout, S.4
  • 4
    • 33947390931 scopus 로고    scopus 로고
    • Prediction of the subcellular location of apoptosis proteins
    • DOI 10.1016/j.jtbi.2006.11.010, PII S0022519306005522
    • YL Chen QZ Li 2007 Prediction of the subcellular location of apoptosis proteins J Theor Biol 245 775 783 10.1016/j.jtbi.2006.11.010 10.1016/j.jtbi.2006.11.010 1:CAS:528:DC%2BD2sXjsVCjsLw%3D 17189644 (Pubitemid 46452663)
    • (2007) Journal of Theoretical Biology , vol.245 , Issue.4 , pp. 775-783
    • Chen, Y.-L.1    Li, Q.-Z.2
  • 5
    • 61549096128 scopus 로고    scopus 로고
    • Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine
    • 10.2174/092986609787049420 10.2174/092986609787049420 19149669
    • C Chen L Chen X Zou P Cai 2009 Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine Protein Pept Lett 16 27 31 10.2174/092986609787049420 10.2174/092986609787049420 19149669
    • (2009) Protein Pept Lett , vol.16 , pp. 27-31
    • Chen, C.1    Chen, L.2    Zou, X.3    Cai, P.4
  • 6
    • 0027219970 scopus 로고
    • A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins
    • KC Chou 1993 A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins J Biol Chem 268 16938 16948 1:CAS:528:DyaK3sXlvFygsbY%3D 8349584 (Pubitemid 23236917)
    • (1993) Journal of Biological Chemistry , vol.268 , Issue.23 , pp. 16938-16948
    • Chou, K.-C.1
  • 7
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space
    • 10.1002/prot.340210406 10.1002/prot.340210406 1:CAS:528: DyaK2MXls12rsb0%3D 7567954
    • KC Chou 1995 A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space Proteins 21 319 344 10.1002/prot.340210406 10.1002/prot.340210406 1:CAS:528:DyaK2MXls12rsb0%3D 7567954
    • (1995) Proteins , vol.21 , pp. 319-344
    • Chou, K.C.1
  • 8
    • 0030049315 scopus 로고    scopus 로고
    • Prediction of human immunodeficiency virus protease cleavage sites in proteins
    • DOI 10.1006/abio.1996.0001
    • KC Chou 1996 Review: prediction of HIV protease cleavage sites in proteins Anal Biochem 233 1 14 10.1006/abio.1996.0001 10.1006/abio.1996.0001 1:CAS:528:DyaK28XmtVKmsA%3D%3D 8789141 (Pubitemid 26036360)
    • (1996) Analytical Biochemistry , vol.233 , Issue.1 , pp. 1-14
    • Chou, K.-C.1
  • 9
    • 0034285487 scopus 로고    scopus 로고
    • Review: Prediction of protein structural classes and subcellular locations
    • 10.2174/1389203003381379 10.2174/1389203003381379 1:CAS:528: DC%2BD3cXnsVeisL0%3D 12369916
    • KC Chou 2000 Review: prediction of protein structural classes and subcellular locations Curr Protein Pept Sci 1 171 208 10.2174/1389203003381379 10.2174/1389203003381379 1:CAS:528:DC%2BD3cXnsVeisL0%3D 12369916
    • (2000) Curr Protein Pept Sci , vol.1 , pp. 171-208
    • Chou, K.C.1
  • 10
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo-amino acid composition
    • DOI 10.1002/prot.1035
    • KC Chou 2001 Prediction of protein cellular attributes using pseudo amino acid composition Proteins 43 246 255 10.1002/prot.1035 10.1002/prot.1035 1:CAS:528:DC%2BD3MXjtFOls74%3D 11288174 (Pubitemid 32367799)
    • (2001) Proteins: Structure, Function and Genetics , vol.43 , Issue.3 , pp. 246-255
    • Chou, K.-C.1
  • 11
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    • 10.1093/bioinformatics/bth466 10.1093/bioinformatics/bth466 1:CAS:528:DC%2BD2MXisVWitw%3D%3D 15308540
    • KC Chou 2005 Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes Bioinformatics 21 10 19 10.1093/bioinformatics/bth466 10.1093/bioinformatics/bth466 1:CAS:528:DC%2BD2MXisVWitw%3D%3D 15308540
    • (2005) Bioinformatics , vol.21 , pp. 10-19
    • Chou, K.C.1
  • 12
    • 3843117638 scopus 로고    scopus 로고
    • Predicting protein structural class by functional domain composition
    • DOI 10.1016/j.bbrc.2004.07.059, PII S0006291X04015554
    • KC Chou YD Cai 2004 Predicting protein structural class by functional domain composition Biochem Biophys Res Commun 321 1007 1009 10.1016/j.bbrc.2004. 07.059 10.1016/j.bbrc.2004.07.059 1:CAS:528:DC%2BD2cXmt1Ogtb0%3D 15358128 (Pubitemid 39044409)
    • (2004) Biochemical and Biophysical Research Communications , vol.321 , Issue.4 , pp. 1007-1009
    • Chou, K.-C.1    Cai, Y.-D.2
  • 13
    • 33745759451 scopus 로고    scopus 로고
    • Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
    • DOI 10.1016/j.bbrc.2006.06.059, PII S0006291X06013593
    • KC Chou HB Shen 2006 Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization Biochem Biophys Res Commun 347 150 157 10.1016/j.bbrc.2006.06.059 10.1016/j.bbrc.2006.06.059 1:CAS:528: DC%2BD28Xmslyrsbc%3D 16808903 (Pubitemid 44015660)
    • (2006) Biochemical and Biophysical Research Communications , vol.347 , Issue.1 , pp. 150-157
    • Chou, K.-C.1    Shen, H.-B.2
  • 14
    • 33747197197 scopus 로고    scopus 로고
    • Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers
    • DOI 10.1021/pr060167c
    • KC Chou HB Shen 2006 Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers J Proteome Res 5 1888 1897 10.1021/pr060167c 10.1021/pr060167c 1:CAS:528: DC%2BD28XmvVeitr0%3D 16889410 (Pubitemid 44232701)
    • (2006) Journal of Proteome Research , vol.5 , Issue.8 , pp. 1888-1897
    • Chou, K.-C.1    Shen, H.-B.2
  • 15
    • 34249318001 scopus 로고    scopus 로고
    • Euk-mPLoc: A fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites
    • DOI 10.1021/pr060635i
    • KC Chou HB Shen 2007 Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites J Proteome Res 6 1728 1734 10.1021/pr060635i 10.1021/pr060635i 1:CAS:528:DC%2BD2sXjs1SrsbY%3D 17397210 (Pubitemid 46814497)
    • (2007) Journal of Proteome Research , vol.6 , Issue.5 , pp. 1728-1734
    • Chou, K.-C.1    Shen, H.-B.2
  • 16
    • 33846605183 scopus 로고    scopus 로고
    • Large-scale plant protein subcellular location prediction
    • DOI 10.1002/jcb.21096
    • KC Chou HB Shen 2007 Large-scale plant protein subcellular location prediction J Cell Biochem 100 665 678 10.1002/jcb.21096 10.1002/jcb.21096 1:CAS:528:DC%2BD2sXht1Slu7c%3D 16983686 (Pubitemid 46180530)
    • (2007) Journal of Cellular Biochemistry , vol.100 , Issue.3 , pp. 665-678
    • Chou, K.-C.1    Shen, H.-B.2
  • 17
    • 34447095147 scopus 로고    scopus 로고
    • MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
    • DOI 10.1016/j.bbrc.2007.06.027, PII S0006291X07012521
    • KC Chou HB Shen 2007 MemType-2L: a web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM Biochem Biophys Res Commun 360 339 345 10.1016/j.bbrc.2007.06.027 10.1016/j.bbrc.2007.06.027 1:CAS:528:DC%2BD2sXnslSqtLw%3D 17586467 (Pubitemid 47030350)
    • (2007) Biochemical and Biophysical Research Communications , vol.360 , Issue.2 , pp. 339-345
    • Chou, K.-C.1    Shen, H.-B.2
  • 18
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • DOI 10.1016/j.ab.2007.07.006, PII S0003269707004423
    • KC Chou HB Shen 2007 Review: recent progresses in protein subcellular location prediction Anal Biochem 370 1 16 10.1016/j.ab.2007.07.006 10.1016/j.ab.2007.07.006 1:CAS:528:DC%2BD2sXhtVOmur%2FF 17698024 (Pubitemid 47404494)
    • (2007) Analytical Biochemistry , vol.370 , Issue.1 , pp. 1-16
    • Chou, K.-C.1    Shen, H.-B.2
  • 19
    • 34247544233 scopus 로고    scopus 로고
    • Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
    • DOI 10.1016/j.bbrc.2007.03.162, PII S0006291X0700664X
    • KC Chou HB Shen 2007 Signal-CF: a subsite-coupled and window-fusing approach for predicting signal peptides Biochem Biophys Res Commun 357 633 640 10.1016/j.bbrc.2007.03.162 10.1016/j.bbrc.2007.03.162 1:CAS:528: DC%2BD2sXkslCju78%3D 17434148 (Pubitemid 46653826)
    • (2007) Biochemical and Biophysical Research Communications , vol.357 , Issue.3 , pp. 633-640
    • Chou, K.-C.1    Shen, H.-B.2
  • 20
    • 39449105071 scopus 로고    scopus 로고
    • Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms
    • DOI 10.1038/nprot.2007.494, PII NPROT.2007.494
    • KC Chou HB Shen 2008 Cell-PLoc: a package of web-servers for predicting subcellular localization of proteins in various organisms Nat Protocols 3 153 162 10.1038/nprot.2007.494 10.1038/nprot.2007.494 1:CAS:528:DC%2BD1cXhvVylsrs%3D (Pubitemid 351266500)
    • (2008) Nature Protocols , vol.3 , Issue.2 , pp. 153-162
    • Chou, K.-C.1    Shen, H.-B.2
  • 21
    • 53149132374 scopus 로고    scopus 로고
    • ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information
    • 10.1016/j.bbrc.2008.08.125 10.1016/j.bbrc.2008.08.125 1:CAS:528:DC%2BD1cXhtFyqtLjL 18774775
    • KC Chou HB Shen 2008 ProtIdent: a web server for identifying proteases and their types by fusing functional domain and sequential evolution information Biochem Biophys Res Commun 376 321 325 10.1016/j.bbrc.2008.08.125 10.1016/j.bbrc.2008.08.125 1:CAS:528:DC%2BD1cXhtFyqtLjL 18774775
    • (2008) Biochem Biophys Res Commun , vol.376 , pp. 321-325
    • Chou, K.C.1    Shen, H.B.2
  • 22
    • 0029157083 scopus 로고
    • Review: Prediction of protein structural classes
    • 10.3109/10409239509083488 10.3109/10409239509083488 1:CAS:528: DyaK2MXosFentb8%3D 7587280
    • KC Chou CT Zhang 1995 Review: prediction of protein structural classes Crit Rev Biochem Mol Biol 30 275 349 10.3109/10409239509083488 10.3109/10409239509083488 1:CAS:528:DyaK2MXosFentb8%3D 7587280
    • (1995) Crit Rev Biochem Mol Biol , vol.30 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 23
    • 0041848237 scopus 로고    scopus 로고
    • Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS
    • DOI 10.1016/S0006-291X(03)01342-1
    • KC Chou DQ Wei WZ Zhong 2003 Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS Biochem Biophys Res Commun 308 148 151 10.1016/S0006-291X(03)01342-1 10.1016/S0006-291X(03)01342-1 1:CAS:528:DC%2BD3sXlvVCktbk%3D 12890493 (Pubitemid 36904134)
    • (2003) Biochemical and Biophysical Research Communications , vol.308 , Issue.1 , pp. 148-151
    • Chou, K.-C.1    Wei, D.-Q.2    Zhong, W.-Z.3
  • 24
    • 33750554701 scopus 로고    scopus 로고
    • Progress in computational approach to drug development againt SARS
    • DOI 10.2174/092986706778773077
    • KC Chou DQ Wei QS Du S Sirois WZ Zhong 2006 Review: progress in computational approach to drug development against SARS Curr Med Chem 13 3263 3270 10.2174/092986706778773077 10.2174/092986706778773077 1:CAS:528: DC%2BD28XhtFyrtr%2FL 17168850 (Pubitemid 44669774)
    • (2006) Current Medicinal Chemistry , vol.13 , Issue.27 , pp. 3263-3270
    • Chou, K.-C.1    Wei, D.-Q.2    Du, Q.-S.3    Sirois, S.4    Zhong, W.-Z.5
  • 25
    • 23144437382 scopus 로고    scopus 로고
    • New assessment of a structural alphabet
    • AG de Brevern 2005 New assessment of a structural alphabet Silico Biol 5 283 289
    • (2005) Silico Biol , vol.5 , pp. 283-289
    • De Brevern, A.G.1
  • 26
    • 48649105466 scopus 로고    scopus 로고
    • Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier
    • 10.1016/j.patrec.2008.06.007 10.1016/j.patrec.2008.06.007 1:CAS:528:DC%2BD1MXhtlOnu7bM
    • YS Ding TL Zhang 2008 Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: an approach with immune genetic algorithm-based ensemble classifier Pattern Recognit Lett 29 1887 1892 10.1016/j.patrec.2008.06.007 10.1016/j.patrec.2008.06.007 1:CAS:528: DC%2BD1MXhtlOnu7bM
    • (2008) Pattern Recognit Lett , vol.29 , pp. 1887-1892
    • Ding, Y.S.1    Zhang, T.L.2
  • 27
    • 0034697980 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
    • 10.1006/jmbi.2000.3903 10.1006/jmbi.2000.3903 1:CAS:528: DC%2BD3cXks1OntrY%3D 10891285
    • O Emanuelsson H Nielsen S Brunak G Heijne 2000 Predicting subcellular localization of proteins based on their N-terminal amino acid sequence J Mol Biol 300 1005 1016 10.1006/jmbi.2000.3903 10.1006/jmbi.2000.3903 1:CAS:528:DC%2BD3cXks1OntrY%3D 10891285
    • (2000) J Mol Biol , vol.300 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    Heijne, G.4
  • 28
    • 35748976251 scopus 로고    scopus 로고
    • A reduced amino acid alphabet for understanding and designing protein adaptation to mutation
    • DOI 10.1007/s00249-007-0188-5
    • C Etchebest C Benros A Bornot AC Camproux AG de Brevern 2007 A reduced amino acid alphabet for understanding and designing protein adaptation to mutation Eur Biophys J 36 1059 1069 10.1007/s00249-007-0188-5 10.1007/s00249-007-0188-5 1:CAS:528:DC%2BD2sXht1CnsLfP 17565494 (Pubitemid 350045038)
    • (2007) European Biophysics Journal , vol.36 , Issue.8 , pp. 1059-1069
    • Etchebest, C.1    Benros, C.2    Bornot, A.3    Camproux, A.-C.4    De Brevern, A.G.5
  • 30
    • 48949107706 scopus 로고    scopus 로고
    • A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search
    • A Garg GPS Raghava 2008 A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search In Silico Biol 8 0012 (Pubitemid 352003632)
    • (2008) Silico Biology , vol.8 , Issue.2 , pp. 129-140
    • Garg, A.1    Raghava, G.P.S.2
  • 31
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • 10.1073/pnas.89.22.10915 10.1073/pnas.89.22.10915 1:CAS:528: DyaK3sXjsFCgsQ%3D%3D 1438297
    • S Henikoff JG Henikoff 1992 Amino acid substitution matrices from protein blocks Proc Natl Acad Sci USA 89 10915 10919 10.1073/pnas.89.22.10915 10.1073/pnas.89.22.10915 1:CAS:528:DyaK3sXjsFCgsQ%3D%3D 1438297
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 32
    • 47549095849 scopus 로고    scopus 로고
    • Using support vector machine to predict β- And γ-turns in proteins
    • 10.1002/jcc.20929 10.1002/jcc.20929 1:CAS:528:DC%2BD1cXptVegtrk%3D 18432623
    • XZ Hu QZ Li 2008 Using support vector machine to predict β- and γ-turns in proteins J Comput Chem 29 1867 1875 10.1002/jcc.20929 10.1002/jcc.20929 1:CAS:528:DC%2BD1cXptVegtrk%3D 18432623
    • (2008) J Comput Chem , vol.29 , pp. 1867-1875
    • Hu, X.Z.1    Li, Q.Z.2
  • 33
    • 43549087105 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: An approach by approximate entropy
    • DOI 10.2174/092986608784246443
    • X Jiang R Wei TL Zhang Q Gu 2008 Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: an approach by approximate entropy Protein Pept Lett 15 392 396 10.2174/092986608784246443 10.2174/092986608784246443 1:CAS:528: DC%2BD1cXlsVOiurY%3D 18473953 (Pubitemid 351679342)
    • (2008) Protein and Peptide Letters , vol.15 , Issue.4 , pp. 392-396
    • Jiang, X.1    Wei, R.2    Zhang, T.3    Gu, Q.4
  • 34
    • 23444436172 scopus 로고
    • Protein design by binary patterning of polar and nonpolar amino acids
    • S Kamtekar 1993 Protein design by binary patterning of polar and nonpolar amino acids Science 262 1680 1685 10.1126/science.8259512 10.1126/science. 8259512 1:CAS:528:DyaK2cXht1Oqtb8%3D 8259512 (Pubitemid 24030088)
    • (1993) Science , vol.262 , Issue.5140 , pp. 1680-1685
    • Kamtekar, S.1    Schiffer, J.M.2    Xiong, H.3    Babik, J.M.4    Hecht, M.H.5
  • 35
    • 0018262333 scopus 로고
    • The measure of diversity
    • 10.1016/0022-5193(78)90302-8 10.1016/0022-5193(78)90302-8
    • RR Laxton 1978 The measure of diversity J Theor Biol 71 51 67 10.1016/0022-5193(78)90302-8 10.1016/0022-5193(78)90302-8
    • (1978) J Theor Biol , vol.71 , pp. 51-67
    • Laxton, R.R.1
  • 36
    • 38149120433 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach
    • 10.1007/s00726-007-0545-9 10.1007/s00726-007-0545-9 1:CAS:528: DC%2BD1cXlt1Clug%3D%3D 17514493
    • FM Li QZ Li 2008 Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach Amino Acids 34 119 125 10.1007/s00726-007-0545-9 10.1007/s00726-007-0545-9 1:CAS:528: DC%2BD1cXlt1Clug%3D%3D 17514493
    • (2008) Amino Acids , vol.34 , pp. 119-125
    • Li, F.M.1    Li, Q.Z.2
  • 37
    • 47249153247 scopus 로고    scopus 로고
    • Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach
    • DOI 10.2174/092986608784966930
    • FM Li QZ Li 2008 Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach Protein Pept Lett 15 612 616 10.2174/092986608784966930 10.2174/092986608784966930 18680458 (Pubitemid 351991249)
    • (2008) Protein and Peptide Letters , vol.15 , Issue.6 , pp. 612-616
    • Li, F.-M.1    Li, Q.-Z.2
  • 38
    • 0035824718 scopus 로고    scopus 로고
    • The prediction of the structural class of protein: Application of the measure of diversity
    • DOI 10.1006/jtbi.2001.2441
    • QZ Li ZQ Lu 2001 The prediction of the structural class of protein: application of the measure of diversity J Theor Biol 213 493 502 10.1006/jtbi.2001.2441 10.1006/jtbi.2001.2441 1:CAS:528:DC%2BD3MXovV2msbs%3D 11735294 (Pubitemid 34014412)
    • (2001) Journal of Theoretical Biology , vol.213 , Issue.3 , pp. 493-502
    • Li, Q.-Z.1    Lu, Z.-Q.2
  • 39
    • 34447131677 scopus 로고    scopus 로고
    • Grouping of amino acids and recognition of protein structurally conserved regions by reduced alphabets of amino acids
    • DOI 10.1007/s11427-007-0023-3
    • J Li W Wang 2007 Grouping of amino acids and recognition of protein structurally conserved regions by reduced alphabets of amino acids Sci China C Life Sci 50 392 402 10.1007/s11427-007-0023-3 10.1007/s11427-007-0023-3 1:CAS:528:DC%2BD2sXosF2hs70%3D 17609897 (Pubitemid 47036725)
    • (2007) Science in China, Series C: Life Sciences , vol.50 , Issue.3 , pp. 392-402
    • Li, J.1    Wang, W.2
  • 40
    • 0038451355 scopus 로고    scopus 로고
    • Reduction of protein sequence complexity by residue grouping
    • T Li K Fan J Wang W Wang 2003 Reduction of protein sequence complexity by residue grouping Protein Eng 16 323 330 10.1093/protein/gzg044 10.1093/protein/gzg044 1:CAS:528:DC%2BD3sXltVWitr8%3D 12826723 (Pubitemid 36806923)
    • (2003) Protein Engineering , vol.16 , Issue.5 , pp. 323-330
    • Li, T.1    Fan, K.2    Wang, J.3    Wang, W.4
  • 41
    • 42749090472 scopus 로고    scopus 로고
    • The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
    • 10.1016/j.jtbi.2008.02.004 10.1016/j.jtbi.2008.02.004 1:CAS:528:DC%2BD1cXlslWisL8%3D 18355838
    • H Lin 2008 The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition J Theor Biol 252 350 356 10.1016/j.jtbi.2008.02.004 10.1016/j.jtbi.2008.02.004 1:CAS:528:DC%2BD1cXlslWisL8%3D 18355838
    • (2008) J Theor Biol , vol.252 , pp. 350-356
    • Lin, H.1
  • 42
    • 34249807035 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components
    • DOI 10.1002/jcc.20554
    • H Lin QZ Li 2007 Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components J Comput Chem 28 1463 1466 10.1002/jcc.20554 10.1002/jcc.20554 1:CAS:528: DC%2BD2sXlslSgs7w%3D 17330882 (Pubitemid 46853785)
    • (2007) Journal of Computational Chemistry , vol.28 , Issue.9 , pp. 1463-1466
    • Lin, H.1    Li, Q.-Z.2
  • 43
    • 33846524311 scopus 로고    scopus 로고
    • Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant
    • DOI 10.1016/j.bbrc.2007.01.011, PII S0006291X07000459
    • H Lin QZ Li 2007 Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant Biochem Biophys Res Commun 354 548 551 10.1016/j.bbrc.2007.01.011 10.1016/j.bbrc.2007. 01.011 1:CAS:528:DC%2BD2sXhtlOgtLo%3D 17239817 (Pubitemid 46161358)
    • (2007) Biochemical and Biophysical Research Communications , vol.354 , Issue.2 , pp. 548-551
    • Lin, H.1    Li, Q.-Z.2
  • 44
    • 49449087313 scopus 로고    scopus 로고
    • Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition
    • 10.2174/092986608785133681 10.2174/092986608785133681 1:CAS:528:DC%2BD1cXnsVygu7o%3D 18782071
    • H Lin H Ding FB Guo AY Zhang J Huang 2008 Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition Protein Pept Lett 15 739 744 10.2174/092986608785133681 10.2174/092986608785133681 1:CAS:528:DC%2BD1cXnsVygu7o%3D 18782071
    • (2008) Protein Pept Lett , vol.15 , pp. 739-744
    • Lin, H.1    Ding, H.2    Guo, F.B.3    Zhang, A.Y.4    Huang, J.5
  • 45
    • 33846974401 scopus 로고    scopus 로고
    • Using a new alignment kernel function to identify secretory proteins
    • DOI 10.2174/092986607779816087
    • H Liu J Yang DQ Liu HB Shen KC Chou 2007 Using a new alignment kernel function to identify secretory proteins Protein Pept Lett 14 203 208 10.2174/092986607779816087 10.2174/092986607779816087 17305609 (Pubitemid 46246797)
    • (2007) Protein and Peptide Letters , vol.14 , Issue.2 , pp. 203-208
    • Liu, H.1    Yang, J.2    Liu, D.-Q.3    Shen, H.-B.4    Chou, K.-C.5
  • 47
    • 40549084359 scopus 로고    scopus 로고
    • In silico local structure approach: A case study on Outer Membrane Proteins
    • DOI 10.1002/prot.21659
    • J Martin AG de Brevern AC Camproux 2008 In silico local structure approach: a case study on outer membrane proteins Proteins 71 92 109 10.1002/prot.21659 10.1002/prot.21659 1:CAS:528:DC%2BD1cXjt1Cktb8%3D 17932925 (Pubitemid 351358594)
    • (2008) Proteins: Structure, Function and Genetics , vol.71 , Issue.1 , pp. 92-109
    • Martin, J.1    De Brevern, A.G.2    Camproux, A.-C.3
  • 48
    • 39549116279 scopus 로고    scopus 로고
    • A genetic approach for building different alphabets for peptide and protein classification
    • DOI 10.1186/1471-2105-9-45
    • L Nanni A Lumini 2008 A genetic approach for building different alphabets for peptide and protein classification BMC Bioinform 9 45 10.1186/1471-2105-9- 45 10.1186/1471-2105-9-45 (Pubitemid 351280032)
    • (2008) BMC Bioinformatics , vol.9 , pp. 45
    • Nanni, L.1    Lumini, A.2
  • 50
    • 37349065829 scopus 로고    scopus 로고
    • An amino acid map of inter-residue contact energies using metric multi-dimensional scaling
    • DOI 10.1016/j.jtbi.2007.09.032, PII S002251930700450X
    • S Rakshit GK Ananthasuresh 2008 An amino acid map of inter-residue contact energies using metric multi-dimensional scaling J Theor Biol 250 291 297 10.1016/j.jtbi.2007.09.032 10.1016/j.jtbi.2007.09.032 1:CAS:528: DC%2BD1cXhtFakug%3D%3D 17981305 (Pubitemid 350297314)
    • (2008) Journal of Theoretical Biology , vol.250 , Issue.2 , pp. 291-297
    • Rakshit, S.1    Ananthasuresh, G.K.2
  • 51
    • 0023812695 scopus 로고
    • Characterization of a helical protein designed from first principles
    • 10.1126/science.3043666 10.1126/science.3043666 1:CAS:528: DyaL1cXmtVKqtrc%3D 3043666
    • L Regan WF Degrado 1988 Characterization of a helical protein designed from first principles Science 241 976 978 10.1126/science.3043666 10.1126/science.3043666 1:CAS:528:DyaL1cXmtVKqtrc%3D 3043666
    • (1988) Science , vol.241 , pp. 976-978
    • Regan, L.1    Degrado, W.F.2
  • 52
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • CE Shannon 1948 A mathematical theory of communication Bell Syst Tech J 27 379 423
    • (1948) Bell Syst Tech J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 53
    • 26844455291 scopus 로고    scopus 로고
    • Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition
    • DOI 10.1016/j.bbrc.2005.09.117, PII S0006291X05021388
    • HB Shen KC Chou 2005 Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition Biochem Biophys Res Commun 337 752 756 1:CAS:528: DC%2BD2MXhtFCjs7%2FI 16213466 (Pubitemid 41446979)
    • (2005) Biochemical and Biophysical Research Communications , vol.337 , Issue.3 , pp. 752-756
    • Shen, H.-B.1    Chou, K.-C.2
  • 54
    • 22144487766 scopus 로고    scopus 로고
    • Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo-amino acid composition to predict membrane protein types
    • DOI 10.1016/j.bbrc.2005.06.087, PII S0006291X0501301X
    • HB Shen KC Chou 2005 Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo amino acid composition to predict membrane protein types Biochem Biophys Res Commun 334 288 292 10.1016/j.bbrc.2005.06.087 10.1016/j.bbrc.2005.06.087 1:CAS:528:DC%2BD2MXmt1aqsLw%3D 16002049 (Pubitemid 40978537)
    • (2005) Biochemical and Biophysical Research Communications , vol.334 , Issue.1 , pp. 288-292
    • Shen, H.1    Chou, K.-C.2
  • 55
    • 33747880465 scopus 로고    scopus 로고
    • Ensemble classifier for protein fold pattern recognition
    • DOI 10.1093/bioinformatics/btl170
    • HB Shen KC Chou 2006 Ensemble classifier for protein fold pattern recognition Bioinformatics 22 1717 1722 10.1093/bioinformatics/btl170 10.1093/bioinformatics/btl170 1:CAS:528:DC%2BD28Xotl2rsLY%3D 16672258 (Pubitemid 44288333)
    • (2006) Bioinformatics , vol.22 , Issue.14 , pp. 1717-1722
    • Shen, H.-B.1    Chou, K.-C.2
  • 56
    • 35348973511 scopus 로고    scopus 로고
    • EzyPred: A top-down approach for predicting enzyme functional classes and subclasses
    • DOI 10.1016/j.bbrc.2007.09.098, PII S0006291X07020864
    • HB Shen KC Chou 2007 EzyPred: a top-down approach for predicting enzyme functional classes and subclasses Biochem Biophys Res Commun 364 53 59 10.1016/j.bbrc.2007.09.098 10.1016/j.bbrc.2007.09.098 1:CAS:528: DC%2BD2sXht1aktbvF 17931599 (Pubitemid 47599445)
    • (2007) Biochemical and Biophysical Research Communications , vol.364 , Issue.1 , pp. 53-59
    • Shen, H.-B.1    Chou, K.-C.2
  • 57
    • 34748902270 scopus 로고    scopus 로고
    • Signal-3L: A 3-layer approach for predicting signal peptides
    • DOI 10.1016/j.bbrc.2007.08.140, PII S0006291X07018426
    • HB Shen KC Chou 2007 Signal-3L: a 3-layer approach for predicting signal peptide Biochem Biophys Res Commun 363 297 303 10.1016/j.bbrc.2007.08.140 10.1016/j.bbrc.2007.08.140 1:CAS:528:DC%2BD2sXhtFWgsrbJ 17880924 (Pubitemid 47484331)
    • (2007) Biochemical and Biophysical Research Communications , vol.363 , Issue.2 , pp. 297-303
    • Shen, H.-B.1    Chou, K.-C.2
  • 58
    • 33847080827 scopus 로고    scopus 로고
    • Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
    • DOI 10.1093/protein/gzl053
    • HB Shen KC Chou 2007 Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins Protein Eng Des Sel 20 39 46 10.1093/protein/gzl053 10.1093/protein/gzl053 1:CAS:528: DC%2BD2sXhvFWmtr8%3D 17244638 (Pubitemid 46269434)
    • (2007) Protein Engineering, Design and Selection , vol.20 , Issue.1 , pp. 39-46
    • Shen, H.-B.1    Chou, K.-C.2
  • 59
    • 33847668306 scopus 로고    scopus 로고
    • Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
    • DOI 10.1016/j.bbrc.2007.02.071, PII S0006291X07003452
    • HB Shen KC Chou 2007 Hum-mPLoc: an ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites Biochem Biophys Res Commun 355 1006 1011 10.1016/j.bbrc.2007.02. 071 10.1016/j.bbrc.2007.02.071 1:CAS:528:DC%2BD2sXivVahur0%3D 17346678 (Pubitemid 46366927)
    • (2007) Biochemical and Biophysical Research Communications , vol.355 , Issue.4 , pp. 1006-1011
    • Shen, H.-B.1    Chou, K.-C.2
  • 60
    • 40649104302 scopus 로고    scopus 로고
    • HIVcleave: A web-server for predicting HIV protease cleavage sites in proteins
    • 10.1016/j.ab.2008.01.012 10.1016/j.ab.2008.01.012 1:CAS:528: DC%2BD1cXjtleqt78%3D 18249180
    • HB Shen KC Chou 2008 HIVcleave: a web-server for predicting HIV protease cleavage sites in proteins Anal Biochem 375 388 390 10.1016/j.ab.2008.01.012 10.1016/j.ab.2008.01.012 1:CAS:528:DC%2BD1cXjtleqt78%3D 18249180
    • (2008) Anal Biochem , vol.375 , pp. 388-390
    • Shen, H.B.1    Chou, K.C.2
  • 61
    • 37549004451 scopus 로고    scopus 로고
    • PseAAC: A flexible web-server for generating various kinds of protein pseudo amino acid composition
    • 10.1016/j.ab.2007.10.012 10.1016/j.ab.2007.10.012 1:CAS:528: DC%2BD1cXivVGqsw%3D%3D 17976365
    • HB Shen KC Chou 2008 PseAAC: a flexible web-server for generating various kinds of protein pseudo amino acid composition Anal Biochem 373 386 388 10.1016/j.ab.2007.10.012 10.1016/j.ab.2007.10.012 1:CAS:528: DC%2BD1cXivVGqsw%3D%3D 17976365
    • (2008) Anal Biochem , vol.373 , pp. 386-388
    • Shen, H.B.1    Chou, K.C.2
  • 62
    • 57749188687 scopus 로고    scopus 로고
    • Identification of proteases and their types
    • 10.1016/j.ab.2008.10.020 10.1016/j.ab.2008.10.020 1:CAS:528: DC%2BD1cXhsFCmsb%2FJ 19007742
    • HB Shen KC Chou 2009 Identification of proteases and their types Anal Biochem 385 153 160 10.1016/j.ab.2008.10.020 10.1016/j.ab.2008.10.020 1:CAS:528:DC%2BD1cXhsFCmsb%2FJ 19007742
    • (2009) Anal Biochem , vol.385 , pp. 153-160
    • Shen, H.B.1    Chou, K.C.2
  • 63
    • 22144498433 scopus 로고    scopus 로고
    • Using supervised fuzzy clustering to predict protein structural classes
    • DOI 10.1016/j.bbrc.2005.06.128, PII S0006291X05012696
    • HB Shen J Yang XJ Liu KC Chou 2005 Using supervised fuzzy clustering to predict protein structural classes Biochem Biophys Res Commun 334 577 581 10.1016/j.bbrc.2005.06.128 10.1016/j.bbrc.2005.06.128 1:CAS:528: DC%2BD2MXmsVOgurg%3D 16023077 (Pubitemid 40982405)
    • (2005) Biochemical and Biophysical Research Communications , vol.334 , Issue.2 , pp. 577-581
    • Shen, H.-B.1    Yang, J.2    Liu, X.-J.3    Chou, K.-C.4
  • 64
    • 33748150984 scopus 로고    scopus 로고
    • Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition
    • DOI 10.1016/j.jtbi.2005.08.016, PII S0022519305003565
    • HB Shen J Yang KC Chou 2006 Fuzzy KNN for predicting membrane protein types from pseudo amino acid composition J Theor Biol 240 9 13 10.1016/j.jtbi.2005.08.016 10.1016/j.jtbi.2005.08.016 1:CAS:528: DC%2BD28Xjs1Knt70%3D 16197963 (Pubitemid 44313787)
    • (2006) Journal of Theoretical Biology , vol.240 , Issue.1 , pp. 9-13
    • Shen, H.-B.1    Yang, J.2    Chou, K.-C.3
  • 65
    • 33847637338 scopus 로고    scopus 로고
    • Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction
    • DOI 10.1007/s00726-006-0478-8
    • HB Shen J Yang KC Chou 2007 Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction Amino Acids 33 57 67 10.1007/s00726-006-0478-8 10.1007/s00726-006-0478-8 1:CAS:528: DC%2BD2sXotVWru7Y%3D 17235453 (Pubitemid 47101466)
    • (2007) Amino Acids , vol.33 , Issue.1 , pp. 57-67
    • Shen, H.-B.1    Yang, J.2    Chou, K.-C.3
  • 66
    • 2942750460 scopus 로고    scopus 로고
    • Virtual screening for SARS-CoV protease based on KZ7088 pharmacophore points
    • 10.1021/ci034270n 1:CAS:528:DC%2BD2cXhs1yitLc%3D 15154780
    • S Sirois DQ Wei QS Du KC Chou 2004 Virtual screening for SARS-CoV protease based on KZ7088 pharmacophore points J Chem Inf Comput Sci 44 1111 1122 10.1021/ci034270n 1:CAS:528:DC%2BD2cXhs1yitLc%3D 15154780
    • (2004) J Chem Inf Comput Sci , vol.44 , pp. 1111-1122
    • Sirois, S.1    Wei, D.Q.2    Du, Q.S.3    Chou, K.C.4
  • 67
    • 15044338866 scopus 로고    scopus 로고
    • The global distribution of clinical episodes of Plasmodium falciparum malaria
    • DOI 10.1038/nature03342
    • RW Snow CA Guerra AM Noor HY Myint SI Hay 2005 The global distribution of clinical episodes of Plasmodium falciparum malaria Nature 434 214 217 10.1038/nature03342 10.1038/nature03342 1:CAS:528:DC%2BD2MXitV2hsr4%3D 15759000 (Pubitemid 40388051)
    • (2005) Nature , vol.434 , Issue.7030 , pp. 214-217
    • Snow, R.W.1    Guerra, C.A.2    Noor, A.M.3    Myint, H.Y.4    Hay, S.I.5
  • 68
    • 35748943561 scopus 로고    scopus 로고
    • On reduced amino acid alphabets for phylogenetic inference
    • 10.1093/molbev/msm144 10.1093/molbev/msm144 1:CAS:528:DC%2BD2sXhtFSjsb7P 17652333
    • E Susko AJ Roger 2007 On reduced amino acid alphabets for phylogenetic inference Mol Biol Evol 24 2139 2150 10.1093/molbev/msm144 10.1093/molbev/msm144 1:CAS:528:DC%2BD2sXhtFSjsb7P 17652333
    • (2007) Mol Biol Evol , vol.24 , pp. 2139-2150
    • Susko, E.1    Roger, A.J.2
  • 69
    • 42949165918 scopus 로고    scopus 로고
    • Identification of proteins secreted by malaria parasite into erythrocyte using SVM and PSSM profiles
    • DOI 10.1186/1471-2105-9-201
    • R Verma A Tiwari S Kaur GC Varshney GPS Raghava 2008 Identification of proteins secreted by malaria parasite into erythrocyte using SVM and PSSM profiles BMC Bioinform 9 201 10.1186/1471-2105-9-201 10.1186/1471-2105-9-201 (Pubitemid 351619136)
    • (2008) BMC Bioinformatics , vol.9 , pp. 201
    • Verma, R.1    Tiwari, A.2    Kaur, S.3    Varshney, G.C.4    Raghava, G.P.S.5
  • 70
    • 38849107581 scopus 로고    scopus 로고
    • Molecular modeling of two CYP2C19 SNPs and its implications for personalized drug design
    • DOI 10.2174/092986608783330305
    • JF Wang DQ Wei C Chen Y Li KC Chou 2008 Molecular modeling of two CYP2C19 SNPs and its implications for personalized drug design Protein Pept Lett 15 27 32 10.2174/092986608783330305 10.2174/092986608783330305 18221009 (Pubitemid 351206472)
    • (2008) Protein and Peptide Letters , vol.15 , Issue.1 , pp. 27-32
    • Wang, J.-F.1    Wei, D.-Q.2    Chen, C.3    Li, Y.4    Chou, K.-C.5
  • 71
    • 52149087297 scopus 로고    scopus 로고
    • Predicting membrane protein types by the LLDA algorithm
    • 10.2174/092986608785849308 10.2174/092986608785849308 1:CAS:528:DC%2BD1MXjsVansLo%3D 18991767
    • T Wang J Yang HB Shen KC Chou 2008 Predicting membrane protein types by the LLDA algorithm Protein Pept Lett 15 915 921 10.2174/092986608785849308 10.2174/092986608785849308 1:CAS:528:DC%2BD1MXjsVansLo%3D 18991767
    • (2008) Protein Pept Lett , vol.15 , pp. 915-921
    • Wang, T.1    Yang, J.2    Shen, H.B.3    Chou, K.C.4
  • 72
    • 6344277430 scopus 로고    scopus 로고
    • Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein
    • DOI 10.1016/j.febslet.2004.09.036, PII S0014579304011512
    • EA Weathers ME Paulaitis TB Woolf JH Hoh 2004 Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein FEBS Lett 576 348 352 10.1016/j.febslet.2004.09.036 10.1016/j.febslet.2004.09.036 1:CAS:528:DC%2BD2cXovV2it7k%3D 15498561 (Pubitemid 39388626)
    • (2004) FEBS Letters , vol.576 , Issue.3 , pp. 348-352
    • Weathers, E.A.1    Paulaitis, M.E.2    Woolf, T.B.3    Hoh, J.H.4
  • 73
    • 53649096054 scopus 로고    scopus 로고
    • Malaria research in the post-genomic era
    • 10.1038/nature07361 10.1038/nature07361 1:CAS:528:DC%2BD1cXht1Wktb%2FO 18843360
    • EA Winzeler 2008 Malaria research in the post-genomic era Nature 455 751 756 10.1038/nature07361 10.1038/nature07361 1:CAS:528:DC%2BD1cXht1Wktb%2FO 18843360
    • (2008) Nature , vol.455 , pp. 751-756
    • Winzeler, E.A.1
  • 74
    • 51349105695 scopus 로고    scopus 로고
    • Predicting protein structural classes with pseudo amino acid composition: An approach using geometric moments of cellular automaton image
    • 10.1016/j.jtbi.2008.06.016 10.1016/j.jtbi.2008.06.016 1:CAS:528:DC%2BD1cXhtFWmu7nN 18634802
    • X Xiao P Wang KC Chou 2008 Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image J Theor Biol 254 691 696 10.1016/j.jtbi.2008.06.016 10.1016/j.jtbi.2008.06.016 1:CAS:528:DC%2BD1cXhtFWmu7nN 18634802
    • (2008) J Theor Biol , vol.254 , pp. 691-696
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 75
    • 67651164110 scopus 로고    scopus 로고
    • Correlation of metabolic pathways with the primary structure in acetylated proteins
    • 10.2174/1875036200802010090 10.2174/1875036200802010090 1:CAS:528:DC%2BD1MXptFSmur8%3D
    • ZR Yang KC Chou 2008 Correlation of metabolic pathways with the primary structure in acetylated proteins Open Bioinform J 2 90 96 10.2174/ 1875036200802010090 10.2174/1875036200802010090 1:CAS:528:DC%2BD1MXptFSmur8%3D
    • (2008) Open Bioinform J , vol.2 , pp. 90-96
    • Yang, Z.R.1    Chou, K.C.2
  • 76
    • 45649083292 scopus 로고    scopus 로고
    • Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition
    • 10.1016/j.jtbi.2008.03.015 10.1016/j.jtbi.2008.03.015 1:CAS:528:DC%2BD1cXnvVyisrs%3D 18471832
    • GY Zhang BS Fang 2008 Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition J Theor Biol 253 310 315 10.1016/j.jtbi.2008.03.015 10.1016/j.jtbi.2008.03.015 1:CAS:528:DC%2BD1cXnvVyisrs%3D 18471832
    • (2008) J Theor Biol , vol.253 , pp. 310-315
    • Zhang, G.Y.1    Fang, B.S.2
  • 77
    • 54249139729 scopus 로고    scopus 로고
    • Predicting lipase types by improved Chou's pseudo-amino acid composition
    • 10.2174/092986608786071184 10.2174/092986608786071184 1:CAS:528:DC%2BD1cXht1Sru7fM 19075826
    • GY Zhang HC Li BS Fang 2008 Predicting lipase types by improved Chou's pseudo-amino acid composition Protein Pept Lett 15 1132 1137 10.2174/092986608786071184 10.2174/092986608786071184 1:CAS:528: DC%2BD1cXht1Sru7fM 19075826
    • (2008) Protein Pept Lett , vol.15 , pp. 1132-1137
    • Zhang, G.Y.1    Li, H.C.2    Fang, B.S.3
  • 78
    • 36348994911 scopus 로고    scopus 로고
    • Prediction protein structural classes with pseudo-amino acid composition: Approximate entropy and hydrophobicity pattern
    • DOI 10.1016/j.jtbi.2007.09.014, PII S0022519307004420
    • TL Zhang YS Ding KC Chou 2008 Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern J Theor Biol 250 186 193 10.1016/j.jtbi.2007.09.014 10.1016/j.jtbi.2007.09.014 1:CAS:528:DC%2BD2sXhsVSmtb%2FN 17959199 (Pubitemid 350160710)
    • (2008) Journal of Theoretical Biology , vol.250 , Issue.1 , pp. 186-193
    • Zhang, T.-L.1    Ding, Y.-S.2    Chou, K.-C.3
  • 79
    • 54749084166 scopus 로고    scopus 로고
    • An intriguing controversy over protein structural class prediction
    • DOI 10.1023/A:1020713915365
    • GP Zhou 1998 An intriguing controversy over protein structural class prediction J Protein Chem 17 729 738 10.1023/A:1020713915365 10.1023/A:1020713915365 1:CAS:528:DyaK1MXnslaltw%3D%3D 9988519 (Pubitemid 29062040)
    • (1998) Journal of Protein Chemistry , vol.17 , Issue.8 , pp. 729-738
    • Zhou, G.-P.1
  • 80
    • 0035400226 scopus 로고    scopus 로고
    • Some insights into protein structural class prediction
    • DOI 10.1002/prot.1071
    • GP Zhou N Assa-Munt 2001 Some insights into protein structural class prediction Proteins 44 57 59 10.1002/prot.1071 10.1002/prot.1071 1:CAS:528:DC%2BD3MXktlSnsbk%3D 11354006 (Pubitemid 32510584)
    • (2001) Proteins: Structure, Function and Genetics , vol.44 , Issue.1 , pp. 57-59
    • Zhou, G.P.1    Assa-Munt, N.2
  • 81
    • 0037233515 scopus 로고    scopus 로고
    • Subcellular location prediction of apoptosis proteins
    • DOI 10.1002/prot.10251
    • GP Zhou K Doctor 2003 Subcellular location prediction of apoptosis proteins Proteins 50 44 48 10.1002/prot.10251 10.1002/prot.10251 1:CAS:528:DC%2BD3sXlsVKmug%3D%3D 12471598 (Pubitemid 36090607)
    • (2003) Proteins: Structure, Function and Genetics , vol.50 , Issue.1 , pp. 44-48
    • Zhou, G.-P.1    Doctor, K.2
  • 82
    • 34548439881 scopus 로고    scopus 로고
    • Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
    • DOI 10.1016/j.jtbi.2007.06.001, PII S0022519307002809
    • XB Zhou C Chen ZC Li XY Zou 2007 Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes J Theor Biol 248 546 551 10.1016/j.jtbi.2007.06.001 10.1016/j.jtbi.2007. 06.001 1:CAS:528:DC%2BD2sXhtVWhsrnI 17628605 (Pubitemid 47368372)
    • (2007) Journal of Theoretical Biology , vol.248 , Issue.3 , pp. 546-551
    • Zhou, X.-B.1    Chen, C.2    Li, Z.-C.3    Zou, X.-Y.4


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