메뉴 건너뛰기




Volumn 84, Issue 1, 2011, Pages 67-70

Prediction of thermophilic proteins using feature selection technique

Author keywords

Amino acid; Feature selection; Protein thermostability; Support vector machine

Indexed keywords

AMINO ACID; DIPEPTIDE;

EID: 78650209947     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2010.10.013     Document Type: Article
Times cited : (100)

References (31)
  • 2
    • 23144461249 scopus 로고    scopus 로고
    • I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
    • Capriotti E., Fariselli P., Casadio R. I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res. 2005, 33:W306-W310.
    • (2005) Nucleic Acids Res. , vol.33
    • Capriotti, E.1    Fariselli, P.2    Casadio, R.3
  • 4
    • 33846486316 scopus 로고    scopus 로고
    • All-atom contact potential approach to protein thermostability analysis
    • Chen C., Li L., Xiao Y. All-atom contact potential approach to protein thermostability analysis. Biopolymers 2007, 85:28-37.
    • (2007) Biopolymers , vol.85 , pp. 28-37
    • Chen, C.1    Li, L.2    Xiao, Y.3
  • 5
    • 34548606295 scopus 로고    scopus 로고
    • Review: recent progresses in protein subcellular location prediction
    • Chou K.C., Shen H.B. Review: recent progresses in protein subcellular location prediction. Anal. Biochem. 2007, 370:1-16.
    • (2007) Anal. Biochem. , vol.370 , pp. 1-16
    • Chou, K.C.1    Shen, H.B.2
  • 6
    • 0029157083 scopus 로고
    • Review: prediction of protein structural classes
    • Chou K.C., Zhang C.T. Review: prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol. 1995, 30:275-349.
    • (1995) Crit. Rev. Biochem. Mol. Biol. , vol.30 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 7
    • 3042644625 scopus 로고    scopus 로고
    • The influence of dipeptide composition on protein thermostability
    • Ding Y., Cai Y., Zhang G., Xu W. The influence of dipeptide composition on protein thermostability. FEBS Lett. 2004, 569:284-288.
    • (2004) FEBS Lett. , vol.569 , pp. 284-288
    • Ding, Y.1    Cai, Y.2    Zhang, G.3    Xu, W.4
  • 8
    • 4444362321 scopus 로고    scopus 로고
    • An electrostatic basis for the stability of thermophilic proteins
    • Dominy B.N., Minoux H., Brooks C.L. An electrostatic basis for the stability of thermophilic proteins. Proteins 2004, 57:128-141.
    • (2004) Proteins , vol.57 , pp. 128-141
    • Dominy, B.N.1    Minoux, H.2    Brooks, C.L.3
  • 9
    • 0035876479 scopus 로고    scopus 로고
    • Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria
    • Fukuchi S., Nishikawa K. Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria. J. Mol. Biol. 2001, 309:835-843.
    • (2001) J. Mol. Biol. , vol.309 , pp. 835-843
    • Fukuchi, S.1    Nishikawa, K.2
  • 10
    • 39749148317 scopus 로고    scopus 로고
    • Discrimination of mesophilic and thermophilic proteins using machine learning algorithms
    • Gromiha M.M., Suresh M.X. Discrimination of mesophilic and thermophilic proteins using machine learning algorithms. Proteins 2008, 70:1274-1279.
    • (2008) Proteins , vol.70 , pp. 1274-1279
    • Gromiha, M.M.1    Suresh, M.X.2
  • 11
    • 0032715527 scopus 로고    scopus 로고
    • Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins
    • Gromiha M.M., Oobatake M., Sarai A. Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins. Biophys. Chem. 1999, 82:51-67.
    • (1999) Biophys. Chem. , vol.82 , pp. 51-67
    • Gromiha, M.M.1    Oobatake, M.2    Sarai, A.3
  • 12
    • 69949115157 scopus 로고    scopus 로고
    • Reliable prediction of protein thermostability change upon double mutation from amino acid sequence
    • Huang L.T., Gromiha M.M. Reliable prediction of protein thermostability change upon double mutation from amino acid sequence. Bioinformatics 2009, 25:2181-2187.
    • (2009) Bioinformatics , vol.25 , pp. 2181-2187
    • Huang, L.T.1    Gromiha, M.M.2
  • 13
    • 77949601825 scopus 로고    scopus 로고
    • CD-HIT Suite: a web server for clustering and comparing biological sequences
    • Huang Y., Niu B., Gao Y., Fu L., Li W. CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 2010, 26:680-682.
    • (2010) Bioinformatics , vol.26 , pp. 680-682
    • Huang, Y.1    Niu, B.2    Gao, Y.3    Fu, L.4    Li, W.5
  • 14
    • 8444244797 scopus 로고    scopus 로고
    • Role of weak interactions in thermal stability of proteins
    • Ibrahim B.S., Pattabhi V. Role of weak interactions in thermal stability of proteins. Biochem. Biophys. Res. Commun. 2004, 325:1082-1089.
    • (2004) Biochem. Biophys. Res. Commun. , vol.325 , pp. 1082-1089
    • Ibrahim, B.S.1    Pattabhi, V.2
  • 15
    • 14644397188 scopus 로고    scopus 로고
    • Amino acid coupling patterns in thermophilic proteins
    • Liang H.K., Huang C.M., Ko M.T., Hwang J.K. Amino acid coupling patterns in thermophilic proteins. Proteins 2005, 59:58-63.
    • (2005) Proteins , vol.59 , pp. 58-63
    • Liang, H.K.1    Huang, C.M.2    Ko, M.T.3    Hwang, J.K.4
  • 16
    • 42749090472 scopus 로고    scopus 로고
    • The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
    • Lin H. The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J. Theor. Biol. 2008, 252:350-356.
    • (2008) J. Theor. Biol. , vol.252 , pp. 350-356
    • Lin, H.1
  • 17
    • 78650178724 scopus 로고    scopus 로고
    • Prediction of subcellular location of mycobacterial protein using feature selection techniques
    • Lin H., Ding H., Guo F.B., Huang J. Prediction of subcellular location of mycobacterial protein using feature selection techniques. Mol. Divers 2009, 10.1007/s11030-009-9205-1.
    • (2009) Mol. Divers
    • Lin, H.1    Ding, H.2    Guo, F.B.3    Huang, J.4
  • 18
    • 70350437815 scopus 로고    scopus 로고
    • Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition
    • Lin H., Wang H., Ding H., Chen Y.L., Li Q.Z. Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition. Acta Biotheor. 2009, 57:321-330.
    • (2009) Acta Biotheor. , vol.57 , pp. 321-330
    • Lin, H.1    Wang, H.2    Ding, H.3    Chen, Y.L.4    Li, Q.Z.5
  • 19
    • 46249096540 scopus 로고    scopus 로고
    • Predicting protein thermostability changes from sequence upon multiple mutations
    • Montanucci L., Fariselli P., Martelli P.L., Casadio R. Predicting protein thermostability changes from sequence upon multiple mutations. Bioinformatics 2008, 24:i190-i195.
    • (2008) Bioinformatics , vol.24
    • Montanucci, L.1    Fariselli, P.2    Martelli, P.L.3    Casadio, R.4
  • 20
    • 28444448722 scopus 로고    scopus 로고
    • Discrimination of outer membrane proteins using support vector machines
    • Park K.J., Gromiha M.M., Horton P., Suwa M. Discrimination of outer membrane proteins using support vector machines. Bioinformatics 2005, 21:4223-4229.
    • (2005) Bioinformatics , vol.21 , pp. 4223-4229
    • Park, K.J.1    Gromiha, M.M.2    Horton, P.3    Suwa, M.4
  • 21
    • 32044454841 scopus 로고    scopus 로고
    • Effective factors in thermostability of thermophilic proteins
    • Sadeghi M., Naderi-Manesh H., Zarrabi M., Ranjbar B. Effective factors in thermostability of thermophilic proteins. Biophys. Chem. 2006, 119:256-270.
    • (2006) Biophys. Chem. , vol.119 , pp. 256-270
    • Sadeghi, M.1    Naderi-Manesh, H.2    Zarrabi, M.3    Ranjbar, B.4
  • 22
    • 77952507530 scopus 로고    scopus 로고
    • Discrimination of thermophilic and mesophilic proteins
    • Taylor T.J., Vaisman I.I. Discrimination of thermophilic and mesophilic proteins. BMC Struct. Biol. 2010, 10(Suppl 1):S5.
    • (2010) BMC Struct. Biol. , vol.10 , Issue.SUPPL. 1
    • Taylor, T.J.1    Vaisman, I.I.2
  • 23
    • 70349897637 scopus 로고    scopus 로고
    • Using the nonlinear dimensionality reduction method for the prediction of subcellular localization of Gram-negative bacterial proteins
    • Wang T., Yang J. Using the nonlinear dimensionality reduction method for the prediction of subcellular localization of Gram-negative bacterial proteins. Mol. Divers. 2009, 13:475-481.
    • (2009) Mol. Divers. , vol.13 , pp. 475-481
    • Wang, T.1    Yang, J.2
  • 25
    • 60849137473 scopus 로고    scopus 로고
    • An expert system to predict protein thermostability using decision tree
    • Wu L.C., Lee J.X., Huang H.D., Liu B.J., Horng J.T. An expert system to predict protein thermostability using decision tree. Expert Syst. Appl. 2009, 36:9007-9014.
    • (2009) Expert Syst. Appl. , vol.36 , pp. 9007-9014
    • Wu, L.C.1    Lee, J.X.2    Huang, H.D.3    Liu, B.J.4    Horng, J.T.5
  • 26
    • 78650171810 scopus 로고    scopus 로고
    • Prediction of interactiveness of proteins and nucleic acids based on feature selections
    • Yuan Y., Shi X., Li X., Lu W., Cai Y., Gu L., Liu L., Li M., Kong X., Xing M. Prediction of interactiveness of proteins and nucleic acids based on feature selections. Mol. Divers 2009, 10.1007/s11030-009-9198-9.
    • (2009) Mol. Divers
    • Yuan, Y.1    Shi, X.2    Li, X.3    Lu, W.4    Cai, Y.5    Gu, L.6    Liu, L.7    Li, M.8    Kong, X.9    Xing, M.10
  • 27
    • 33646789420 scopus 로고    scopus 로고
    • Application of Amino acid distribution along the sequence for discriminating mesophilic and thermophilic proteins
    • Zhang G., Fang B. Application of Amino acid distribution along the sequence for discriminating mesophilic and thermophilic proteins. Process Biochem. 2006, 41:1792-1798.
    • (2006) Process Biochem. , vol.41 , pp. 1792-1798
    • Zhang, G.1    Fang, B.2
  • 28
    • 32244442728 scopus 로고    scopus 로고
    • Discrimination of thermophilic and mesophilic proteins via pattern recognition methods
    • Zhang G., Fang B. Discrimination of thermophilic and mesophilic proteins via pattern recognition methods. Process Biochem. 2006, 41:552-556.
    • (2006) Process Biochem. , vol.41 , pp. 552-556
    • Zhang, G.1    Fang, B.2
  • 29
    • 33750622270 scopus 로고    scopus 로고
    • Support vector machine for discrimination of thermophilic and mesophilic proteins based on amino acid composition
    • Zhang G., Fang B. Support vector machine for discrimination of thermophilic and mesophilic proteins based on amino acid composition. Protein Pept. Lett. 2006, 13:965-970.
    • (2006) Protein Pept. Lett. , vol.13 , pp. 965-970
    • Zhang, G.1    Fang, B.2
  • 30
    • 37849186878 scopus 로고    scopus 로고
    • LogitBoost classifier for discriminating thermophilic and mesophilic proteins
    • Zhang G., Fang B. LogitBoost classifier for discriminating thermophilic and mesophilic proteins. J. Biotechnol. 2007, 127:417-424.
    • (2007) J. Biotechnol. , vol.127 , pp. 417-424
    • Zhang, G.1    Fang, B.2
  • 31
    • 38149111171 scopus 로고    scopus 로고
    • Differences in amino acids composition and coupling patterns between mesophilic and thermophilic proteins
    • Zhou X.X., Wang Y.B., Pan Y.J., Li W.F. Differences in amino acids composition and coupling patterns between mesophilic and thermophilic proteins. Amino Acids 2008, 34:25-33.
    • (2008) Amino Acids , vol.34 , pp. 25-33
    • Zhou, X.X.1    Wang, Y.B.2    Pan, Y.J.3    Li, W.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.