Discrimination of thermophilic and mesophilic proteins via pattern recognition methods

Process Biochemistry

Volumn 41, Issue 3, 2006, Pages 552-556

  Zhang, Guangya ^a   Fang, Baishan ^a  

^a HUAQIAO UNIVERSITY   (China)

Author keywords

Backpropagation neural network; Partial least square regression; Principal component analysis; Protein thermostability; Sequence characteristic relationship; Stepwise regression

Indexed keywords

BACKPROPAGATION; LEAST SQUARES APPROXIMATIONS; PATTERN RECOGNITION; PRINCIPAL COMPONENT ANALYSIS;

PARTIAL LEAST SQUARE REGRESSION; PROTEIN THERMOSTABILITY; STEPWISE REGRESSION;

PROTEINS;

EID: 32244442728     PISSN: 13595113     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.procbio.2005.09.003     Document Type: Article

References (16)

1. T. McCarthy, O. Hanniffy, E. Lalor, A.V. Savage, and M.G. Tuohy Evaluation of three thermostable fungal endo-β-glucanases from Talaromyces emersonii for brewing and food applications Process Biochem 40 5 2005 1741 1748
2. R. Sharma, S.K. Soni, R.M. Vohra, L.K. Gupta, and J.K. Gupta Purification and characterisation of a thermostable alkaline lipase from a new thermophilic Bacillus sp. RSJ-1 Process Biochem 37 10 2002 1075 1084
3. C.O. Fagain Understanding and increasing protein stability Biochem Biophys Acta 1252 1995 1 14
4. D.P. Kreil, and C.A. Ouzounis Identification of thermophilic species by the amino acid compositions deduced from their genomes Nucleic Acids Res 29 2001 1608 1615
5. N.R. Pal, and S. Pal Computational intelligence for pattern recognition Int J Pattern Recognit Artif Intell 16 2002 773 779
6. P.P. Seung, and Y.J. Yoo Protein thermostability: structure-based difference of amino acid between thermophilic and mesophilic proteins J Biotechnol 1111 2004 269 277
7. Q.Y. Tang, and M.G. Feng Practical statistics and DPS data processing system 2002 Science Press Peking, China p. 241-90
8. D. Duttaa, A.K. Mohanty, R.K. Choudhury, and P. Chand Pattern recognition of particle tracks using principal component analysis and artificial neural network Nucl Instrum Methods Phys Res A 404 1998 445 454
9. P. Geladi, and B.R. Kowalski Partial least-squares regression: a tutorial Anal Chim Acta 185 1986 1 17
10. H. Bahram, A.S. Mohammad, M. Ramin, and N. Nasim Toward an optimal procedure for PC-ANN model building: prediction of the carcinogenic activity of a large set of drugs J Chem Inf Model 45 2005 190 199
11. S. Chakravarty, and R. Varadarajan Elucidation of determinants of protein stability through genome sequence analysis FEBS Lett 470 2000 65 69
12. M.J. Thompson, and D. Eisenberg Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability J Mol Biol 290 1999 595 604
13. C. Vieille, and G.J. Zeikus Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability Microbiol Mol Biol Rev 65 1 2001 1 43
14. J.C. Ma, and D.A. Dougherty The cation-pi interaction Chem Rev 97 1997 1303 1324
15. S. Kumar, C.J. Tsai, and R. Nussinov Factors enhancing protein thermostability Protein Eng 13 2000 179 191
16. E.D. Dorn, G.D. McDonald, M.C. Storrie-Lombardi, and K.H. Nealson Principal component analysis and neural networks for detection of amino acid biosignatures Icarus 166 2003 403 409