Practical single molecule force spectroscopy: How to determine fundamental thermodynamic parameters of intermolecular bonds with an atomic force microscope

Methods

Volumn 60, Issue 2, 2013, Pages 142-150

  Noy, Aleksandr ^a,b   Friddle, Raymond W ^c  

^a LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c SANDIA NATIONAL LABORATORIES   (United States)

Author keywords

Atomic force microscopy; Dynamic force spectroscopy; Single molecule force spectroscopy

Indexed keywords

ANALYTIC METHOD; ARTICLE; ATOMIC FORCE MICROSCOPY; CHEMICAL BINDING; CHEMICAL STRUCTURE; ENERGY; KINETICS; MATHEMATICAL MODEL; MOLECULAR MODEL; NOISE; PRIORITY JOURNAL; PROCESS DESIGN; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; SINGLE MOLECULE FORCE SPECTROSCOPY; SPECTROSCOPY; THERMODYNAMICS;

ALGORITHMS; DATA INTERPRETATION, STATISTICAL; KINETICS; MECHANICAL PHENOMENA; MICROSCOPY, ATOMIC FORCE; MODELS, CHEMICAL; SIGNAL-TO-NOISE RATIO; THERMODYNAMICS;

EID: 84878229230     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2013.03.014     Document Type: Article

References (45)

1. Muller D.J., Dufrene Y.F. Nat. Nanotechnol. 2008, 3(5):261-269.
2. Bustamante C., Bryant Z., Smith S.B. Nature 2003, 421(6921):423-427.
3. Bustamante C., Macosko J.C., Wuite G.J.L. Nat. Rev. Mol. Cell Biol. 2000, 1(2):130-136.
4. Handbook of Molecular Force Spectroscopy 2008, Springer, New York. A. Noy (Ed.).
5. Frisbie C.D., et al. Science 1994, 265:2071.
6. Florin E.L., Moy V.T., Gaub H.E. Science 1994, 264(5157):415-417.
7. Merkel R., et al. Nature 1999, 397(6714):50-53.
8. Manalis S.R., et al. Appl. Phys. Lett. 1996, 69:3944-3946.
9. Israelachvili, J. Intermolecular and Surface Forces 1992, Academic Press, New York.
10. Binnig G., Quate C.F., Gerber C. Phys. Rev. Lett. 1986, 56(9):930-933.
11. Mate C., et al. Phys. Rev. Lett. 1987, 59:1942-1945.
12. Meyer G., Amer N.M. Appl. Phys. Lett. 1988, 53(12):1045-1047.
13. Noy A., et al. J. Am. Chem. Soc. 1995, 117(30):7943-7951.
14. Ducker W.A., Senden T.J., Pashley R.M. Nature 1991, 353:239-241.
15. Muller D.J., et al. Nat. Chem. Biol. 2009, 5(6):383-390.
16. Friddle R., et al. Nat. Nanotechnol. 2007, 2:692-697.
17. Green J.-B.D., et al. J. Phys. Chem. 1995, 99:10960.
18. Hinterdorfer P., Dufrene Y.F. Nat. Methods 2006, 3(5):347-355.
19. Fuhrmann A., Ros R. Nanomedicine 2010, 5(4):657-666.
20. Clausen-Schaumann H., et al. Curr. Opin. Chem. Biol. 2000, 4(5):524-530.
21. Neuman K.C., Nagy A. Nat. Methods 2008, 5(6):491-505.
22. Bell G.I. Science 1978, 200(4342):618-627.
23. Evans E., Ritchie K. Biophys. J. 1997, 72(4):1541-1555.
24. Evans E., Williams P. Physics of Bio-Molecules and Cells 2002, 147-185. Springer and EDP Sciences, Heidelberg. H. Flyvbjerg (Ed.).
25. Friddle R., et al. J. Phys. Chem. C 2008, 112(13):4986-4990.
26. Walton E., Lee S., Van Vliet K. Biophys. J . 2008, 94(7):2621.
27. Tshiprut Z., Klafter J., Urbakh M. Biophys. J . 2008, 95(6):L42-L44.
28. Evans E. Ann. Rev. Biophys. Biomol. Struct. 2001, 30:105-128.
29. Friddle R., Noy A., De Yoreo J. Proc. Natl. Acad. Sci. USA 2012, 109(34):13573-13578.
30. Blanchette C.D., Loui A., Ratto T.V. Hanbook of Molecular Force Spectroscopy 2008, Springer. A. Noy (Ed.).
31. Wong S.S., et al. Nature 1998, 394(6688):52-55.
32. Wong S.S., et al. J. Am. Chem. Soc. 1998, 120(3):603-604.
33. Kennedy S.J., Cole D.G., Clark R.L. Rev. Sci. Instrum. 2011, 82(11):116107-116107-3.
34. Sader J.E. J. Appl. Phys. 1998, 84(1):64-76.
35. Pirzer T., Hugel T. Rev. Sci. Instrum. 2009, 80(3):035110-035110-6.
36. Dey A., Szoszkiewicz R. Nanotechnology 2012, 23(17):175101.
37. Smith D.P.E. Rev. Sci. Instrum. 1995, 66(5):3191-3195.
38. Viani M.B., et al. J. Appl. Phys. 1999, 86(4):2258-2262.
39. Sulchek T., Friddle R.W., Noy A. Biophys. J. 2006, 90(12):4686-4691.
40. Sulchek T.A., et al. Proc. Natl. Acad. Sci. USA 2005, 102(46):16638-16643.
41. Friedsam C., et al. J. Phys. Condens. Matter 2003, 15(18):S1709-S1723.
42. Ray C., Brown J.R., Akhremitchev B.B. J. Phys. Chem. B 2007, 111(8):1963-1974.
43. Oesterhelt F., Rief M., Gaub H.E. New J. Phys. 1999, 1(1):1-11.
44. Baumann C.G., et al. Proc. Natl. Acad. Sci. USA 1997, 94(12):6185-6190.
45. Brockwell D.J., et al. Nat. Struct. Biol. 2003, 10(9):731-737.