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Volumn 132, Issue 2, 2013, Pages 93-104

Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information

Author keywords

Evolution; Gene structure; Mutual Information

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BIOLOGICAL MODEL; EXON; GENETIC DATABASE; GENETICS; GENOME; INTRON; INVERTEBRATE; MOLECULAR EVOLUTION; PHYLOGENY; PROBABILITY; SEQUENCE ALIGNMENT; STATISTICAL MODEL;

EID: 84878017570     PISSN: 14317613     EISSN: 16117530     Source Type: Journal    
DOI: 10.1007/s12064-012-0173-0     Document Type: Article
Times cited : (2)

References (55)
  • 1
    • 3042683172 scopus 로고    scopus 로고
    • Information theory in molecular biology
    • 10.1016/j.plrev.2004.01.002
    • Adami C (2004) Information theory in molecular biology. Phys Life Rev 1(1):3-22
    • (2004) Phys Life Rev , vol.1 , Issue.1 , pp. 3-22
    • Adami, C.1
  • 2
    • 77649287495 scopus 로고    scopus 로고
    • Evolution of spliceosomal introns following endosymbiotic gene transfer
    • 20178587 10.1186/1471-2148-10-57
    • Ahmadinejad N, Dagan T, Gruenheit N, Martin W, Gabaldon T (2010) Evolution of spliceosomal introns following endosymbiotic gene transfer. BMC Evol Biol 10(1):57
    • (2010) BMC Evol Biol , vol.10 , Issue.1 , pp. 57
    • Ahmadinejad, N.1    Dagan, T.2    Gruenheit, N.3    Martin, W.4    Gabaldon, T.5
  • 3
    • 41549106766 scopus 로고    scopus 로고
    • The average mutual information profile as a genomic signature
    • 10.1186/1471-2105-9-48
    • Bauer M, Schuster SM, Sayood K (2008) The average mutual information profile as a genomic signature. BMC Bioinformatics 9:48
    • (2008) BMC Bioinforma , vol.9 , pp. 48
    • Bauer, M.1    Schuster, S.M.2    Sayood, K.3
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc Ser B (Methodol) 57(1):289-300
    • (1995) J R Stat Soc ser B (Methodol) , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 0036884167 scopus 로고    scopus 로고
    • The use and analysis of microarray data
    • 12461517 10.1038/nrd961 1:CAS:528:DC%2BD38XptFKmsL4%3D
    • Butte A (2002) The use and analysis of microarray data. Nat Rev Drug Discov 1(12):951-60
    • (2002) Nat Rev Drug Discov , vol.1 , Issue.12 , pp. 951-960
    • Butte, A.1
  • 6
    • 34347398058 scopus 로고    scopus 로고
    • Evolutionarily conserved genes preferentially accumulate introns
    • 17495009 10.1101/gr.5978207 1:CAS:528:DC%2BD2sXnvVWkuro%3D
    • Carmel L, Rogozin IB, Wolf YI, Koonin EV (2007) Evolutionarily conserved genes preferentially accumulate introns. Genome Res 17(7):1045-1050
    • (2007) Genome Res , vol.17 , Issue.7 , pp. 1045-1050
    • Carmel, L.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 7
    • 3543107924 scopus 로고    scopus 로고
    • A phylogeny of caenorhabditis reveals frequent loss of introns during nematode evolution
    • 15231741 10.1101/gr.2639304 1:CAS:528:DC%2BD2cXlvFWjsb4%3D
    • Cho S, Jin S, Cohen A, Ellis RE (2004) A phylogeny of caenorhabditis reveals frequent loss of introns during nematode evolution. Genome Res 14(7):1207-1220
    • (2004) Genome Res , vol.14 , Issue.7 , pp. 1207-1220
    • Cho, S.1    Jin, S.2    Cohen, A.3    Ellis, R.E.4
  • 8
    • 46249111264 scopus 로고    scopus 로고
    • Malin: Maximum likelihood analysis of intron evolution in eukaryotes
    • 18474506 10.1093/bioinformatics/btn226
    • Csurös M (2008) Malin: maximum likelihood analysis of intron evolution in eukaryotes. Bioinform Biol Insights 24(13):1538-1539
    • (2008) Bioinformatics , vol.24 , Issue.13 , pp. 1538-1539
    • Csurös, M.1
  • 11
    • 68849131258 scopus 로고    scopus 로고
    • HaMStR: Profile hidden markov model based search for orthologs in ESTs
    • 19586527 10.1186/1471-2148-9-157
    • Ebersberger I, Strauss S, von Haeseler A (2009) HaMStR: profile hidden markov model based search for orthologs in ESTs. BMC Evol Biol 9:157-157
    • (2009) BMC Evol Biol , vol.9 , pp. 157-157
    • Ebersberger, I.1    Strauss, S.2    Von Haeseler, A.3
  • 12
    • 84959795073 scopus 로고
    • Phylogenetic analysis under dollo's law
    • 10.2307/2412867
    • Farris JS (1977) Phylogenetic analysis under dollo's law. Syst Zool 26(1):77-88
    • (1977) Syst Zool , vol.26 , Issue.1 , pp. 77-88
    • Farris, J.S.1
  • 13
    • 0037058978 scopus 로고    scopus 로고
    • Large-scale comparison of intron positions among animal, plant, and fungal genes
    • 10.1073/pnas.242624899 1:CAS:528:DC%2BD38Xps1ensL4%3D
    • Fedorov A, Merican AF, Gilbert W (2002) Large-scale comparison of intron positions among animal, plant, and fungal genes. Proc Nat Acad Sci USA 99(25):16,128-16,133
    • (2002) Proc Nat Acad Sci USA , vol.99 , Issue.25 , pp. 16
    • Fedorov, A.1    Merican, A.F.2    Gilbert, W.3
  • 14
    • 0003437302 scopus 로고    scopus 로고
    • Distributed by the author Department of Genome Sciences, University of Washington, Seattle
    • Felsenstein J (2005) PHYLIP (phylogeny inference package) version 3.6. Distributed by the author Department of Genome Sciences, University of Washington, Seattle
    • (2005) PHYLIP (Phylogeny Inference Package) Version 3.6
    • Felsenstein, J.1
  • 15
    • 0242268536 scopus 로고    scopus 로고
    • Evolution: Ending incongruence
    • 14574398 10.1038/425782a 1:CAS:528:DC%2BD3sXotlWqsL4%3D
    • Gee H (2003) Evolution: ending incongruence. Nat Biotechnol 425(6960):782
    • (2003) Nature , vol.425 , Issue.6960 , pp. 782
    • Gee, H.1
  • 16
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • 15461798 10.1186/gb-2004-5-10-r80
    • Gentleman RC, Carey VJ, Bates DM et al (2004) Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol 5:R80
    • (2004) Genome Biol , vol.5 , pp. 80
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3
  • 17
    • 77954505678 scopus 로고    scopus 로고
    • Data integration using scanners with sql output-the bioscanners project at sourceforge
    • Groth D, Hartmann S, Friemel M, Hill N, Müller S, Poustka AJ, Panopoulou G (2010) Data integration using scanners with sql output-the bioscanners project at sourceforge. J Integr Bioinforma 7(3)
    • (2010) J Integr Bioinforma , vol.7 , Issue.3
    • Groth D, H.1
  • 18
    • 43249090276 scopus 로고    scopus 로고
    • Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment
    • 18366758 10.1186/1471-2148-8-95
    • Hartmann S, Vision TJ (2008) Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment. BMC Evol Biol 8:95-95
    • (2008) BMC Evol Biol , vol.8 , pp. 95-95
    • Hartmann, S.1    Vision, T.J.2
  • 20
    • 77958450862 scopus 로고    scopus 로고
    • Deep Genomic-Scale analyses of the metazoa reject coelomata: Evidence from single- and multigene families analyzed under a supertree and supermatrix paradigm
    • 20624736 10.1093/gbe/evq016
    • Holton TA, Pisani D (2010) Deep Genomic-Scale analyses of the metazoa reject coelomata: Evidence from single- and multigene families analyzed under a supertree and supermatrix paradigm. Genome Biol Evol 2:310-324
    • (2010) Genome Biol Evol , vol.2 , pp. 310-324
    • Holton, T.A.1    Pisani, D.2
  • 21
    • 25444465885 scopus 로고    scopus 로고
    • Species-specific analysis of protein sequence motifs using mutual information
    • 10.1186/1471-2105-6-164
    • Hummel J, Keshvari N, Weckwerth W, Selbig J (2005) Species-specific analysis of protein sequence motifs using mutual information. BMC Bioinformatics 6:164
    • (2005) BMC Bioinforma , vol.6 , pp. 164
    • Hummel, J.1    Keshvari, N.2    Weckwerth, W.3    Selbig, J.4
  • 22
    • 41149095429 scopus 로고    scopus 로고
    • Spliceosomal introns as tools for genomic and evolutionary analysis
    • 18263615 10.1093/nar/gkn012 1:CAS:528:DC%2BD1cXjsValsbg%3D
    • Irimia M, Roy SW (2008) Spliceosomal introns as tools for genomic and evolutionary analysis. Nucleic Acids Res Suppl 36(5):1703-1712
    • (2008) Nucleic Acids Res , vol.36 , Issue.5 , pp. 1703-1712
    • Irimia, M.1    Roy, S.W.2
  • 23
    • 33645850710 scopus 로고    scopus 로고
    • Phylogenomics: The beginning of incongruence
    • 16490279 10.1016/j.tig.2006.02.003 1:CAS:528:DC%2BD28XjtFCqsbk%3D
    • Jeffroy O, Brinkmann H, Delsuc F, Philippe H (2006) Phylogenomics: the beginning of incongruence. Trends Genet 22(4):225-231
    • (2006) Trends Genet , vol.22 , Issue.4 , pp. 225-231
    • Jeffroy, O.1    Brinkmann, H.2    Delsuc, F.3    Philippe, H.4
  • 24
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: Improvement in accuracy of multiple sequence alignment
    • 15661851 10.1093/nar/gki198 1:CAS:528:DC%2BD2MXhtV2qsbc%3D
    • Katoh K, ichi Kuma K, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res Suppl 33(2):511-518
    • (2005) Nucleic Acids Res , vol.33 , Issue.2 , pp. 511-518
    • Katoh, K.1    Ichi Kuma, K.2    Toh, H.3    Miyata, T.4
  • 25
    • 69249211050 scopus 로고    scopus 로고
    • Intron-dominated genomes of early ancestors of eukaryotes
    • 19617525 10.1093/jhered/esp056 1:CAS:528:DC%2BD1MXhtVGrsbnN
    • Koonin EV (2009) Intron-dominated genomes of early ancestors of eukaryotes. J Hered 100(5):618-623
    • (2009) J Hered , vol.100 , Issue.5 , pp. 618-623
    • Koonin, E.V.1
  • 26
    • 10344222940 scopus 로고    scopus 로고
    • Phylogenetic mapping of intron positions: A case study of translation initiation factor eIF2
    • 15356279 10.1093/molbev/msh255 1:CAS:528:DC%2BD2cXhtFansrbO
    • Krauss V, Pecyna M, Kurz K, Sass H (2005) Phylogenetic mapping of intron positions: a case study of translation initiation factor eIF2. Mol Biol Evol 22(1):74-84
    • (2005) Mol Biol Evol , vol.22 , Issue.1 , pp. 74-84
    • Krauss, V.1    Pecyna, M.2    Kurz, K.3    Sass, H.4
  • 27
    • 49849088157 scopus 로고    scopus 로고
    • Near intron positions are reliable phylogenetic markers: An application to holometabolous insects
    • 18296416 10.1093/molbev/msn013 1:CAS:528:DC%2BD1cXlvVKhur8%3D
    • Krauss V, Thümmler C, Georgi F, Lehmann J, Stadler PF, Eisenhardt C (2008) Near intron positions are reliable phylogenetic markers: an application to holometabolous insects. Mol Biol Evol 25(5):821-830
    • (2008) Mol Biol Evol , vol.25 , Issue.5 , pp. 821-830
    • Krauss, V.1    Thümmler, C.2    Georgi, F.3    Lehmann, J.4    Stadler, P.F.5    Eisenhardt, C.6
  • 28
    • 70849137211 scopus 로고    scopus 로고
    • Extensive, recent intron gains in daphnia populations
    • 19965475 10.1126/science.1179302 1:CAS:528:DC%2BD1MXhsVKhtbbL
    • Li W, Tucker AE, Sung W, Thomas WK, Lynch M (2009) Extensive, recent intron gains in daphnia populations. Sci Agric 326(5957):1260-1262
    • (2009) Science , vol.326 , Issue.5957 , pp. 1260-1262
    • Li, W.1    Tucker, A.E.2    Sung, W.3    Thomas, W.K.4    Lynch, M.5
  • 29
    • 84872246297 scopus 로고    scopus 로고
    • New maximum likelihood estimators for eukaryotic intron evolution
    • 16389300 10.1371/journal.pcbi.0010079
    • Nguyen HD, Yoshihama M, Kenmochi N (2005) New maximum likelihood estimators for eukaryotic intron evolution. PLoS Comput Biol 1(7):e79
    • (2005) PLoS Comput Biol , vol.1 , Issue.7 , pp. 79
    • Nguyen, H.D.1    Yoshihama, M.2    Kenmochi, N.3
  • 30
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • 14734327 10.1093/bioinformatics/btg412 1:CAS:528:DC%2BD2cXms1eitg%3D%3D
    • Paradis E, Claude J, Strimmer K (2004) APE: analyses of phylogenetics and evolution in R language. Bioinform Biol Insights 20:289-290
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 31
    • 79251587451 scopus 로고    scopus 로고
    • Sequence alignment, mutual information, and dissimilarity measures for constructing phylogenies
    • 10.1371/journal.pone.0014373 1:CAS:528:DC%2BC3MXosVKrtg%3D%3D
    • Penner O, Grassberger P, Paczuski M (2011) Sequence alignment, mutual information, and dissimilarity measures for constructing phylogenies. PLoS One 6(1):e14,373
    • (2011) PLoS One , vol.6 , Issue.1 , pp. 14
    • Penner, O.1    Grassberger, P.2    Paczuski, M.3
  • 32
    • 17744386162 scopus 로고    scopus 로고
    • Multigene analyses of bilaterian animals corroborate the monophyly of ecdysozoa, lophotrochozoa, and protostomia
    • 15703236 10.1093/molbev/msi111 1:CAS:528:DC%2BD2MXjvVKitbg%3D
    • Philippe H, Lartillot N, Brinkmann H (2005) Multigene analyses of bilaterian animals corroborate the monophyly of ecdysozoa, lophotrochozoa, and protostomia. Mol Biol Evol 22(5):1246-1253
    • (2005) Mol Biol Evol , vol.22 , Issue.5 , pp. 1246-1253
    • Philippe, H.1    Lartillot, N.2    Brinkmann, H.3
  • 33
    • 3042548834 scopus 로고    scopus 로고
    • The evolutionary gain of spliceosomal introns: Sequence and phase preferences
    • 15014153 10.1093/molbev/msh120 1:CAS:528:DC%2BD2cXltlKls78%3D
    • Qiu W, Schisler N, Stoltzfus A (2004) The evolutionary gain of spliceosomal introns: sequence and phase preferences. Mol Biol Evol 21(7):1252-1263
    • (2004) Mol Biol Evol , vol.21 , Issue.7 , pp. 1252-1263
    • Qiu, W.1    Schisler, N.2    Stoltzfus, A.3
  • 35
    • 0042921194 scopus 로고    scopus 로고
    • Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution
    • 12956953 10.1016/S0960-9822(03)00558-X 1:CAS:528:DC%2BD3sXntVKhsr0%3D
    • Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV (2003) Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr Biol 13(17):1512-1517
    • (2003) Curr Biol , vol.13 , Issue.17 , pp. 1512-1517
    • Rogozin, I.B.1    Wolf, Y.I.2    Sorokin, A.V.3    Mirkin, B.G.4    Koonin, E.V.5
  • 36
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • Rokas, Holland (2000) Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 15(11):454-459
    • (2000) Trends Ecol Evol , vol.15 , Issue.11 , pp. 454-459
    • Holland, R.1
  • 37
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • 14574403 10.1038/nature02053 1:CAS:528:DC%2BD3sXotlWqsbc%3D
    • Rokas A, Williams BL, King N, Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nat Biotechnol 425(6960):798-804
    • (2003) Nature , vol.425 , Issue.6960 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 38
    • 59149097358 scopus 로고    scopus 로고
    • Algorithm of OMA for large-scale orthology inference
    • 10.1186/1471-2105-9-518
    • Roth A, Gonnet G, Dessimoz C (2008) Algorithm of OMA for large-scale orthology inference. BMC Bioinformatics 9(1):518
    • (2008) BMC Bioinforma , vol.9 , Issue.1 , pp. 518
    • Roth, A.1    Gonnet, G.2    Dessimoz, C.3
  • 39
    • 33747188649 scopus 로고    scopus 로고
    • Intron-rich ancestors
    • 16857287 10.1016/j.tig.2006.07.002 1:CAS:528:DC%2BD28XotlGksLY%3D
    • Roy SW (2006) Intron-rich ancestors. Trends Genet 22(9):468-471
    • (2006) Trends Genet , vol.22 , Issue.9 , pp. 468-471
    • Roy, S.W.1
  • 40
    • 15444379114 scopus 로고    scopus 로고
    • Resolution of a deep animal divergence by the pattern of intron conservation
    • 15769859 10.1073/pnas.0409891102 1:CAS:528:DC%2BD2MXivFCrtbc%3D
    • Roy SW, Gilbert W (2005a) Resolution of a deep animal divergence by the pattern of intron conservation. Proc Nat Acad Sci USA 102(12):4403-4408
    • (2005) Proc Nat Acad Sci USA , vol.102 , Issue.12 , pp. 4403-4408
    • Roy, S.W.1    Gilbert, W.2
  • 41
    • 17644379051 scopus 로고    scopus 로고
    • Rates of intron loss and gain: Implications for early eukaryotic evolution
    • 15827119 10.1073/pnas.0500383102 1:CAS:528:DC%2BD2MXjslaktLg%3D
    • Roy SW, Gilbert W (2005b) Rates of intron loss and gain: implications for early eukaryotic evolution. Proc Nat Acad Sci USA 102(16):5773-5778
    • (2005) Proc Nat Acad Sci USA , vol.102 , Issue.16 , pp. 5773-5778
    • Roy, S.W.1    Gilbert, W.2
  • 42
    • 13844309569 scopus 로고    scopus 로고
    • Complex early genes
    • 15687506 10.1073/pnas.0408355101 1:CAS:528:DC%2BD2MXhvFGrurg%3D
    • Roy SW, Gilbert W (2005c) Complex early genes. Proc Nat Acad Sci USA 102(6):1986-1991
    • (2005) Proc Nat Acad Sci USA , vol.102 , Issue.6 , pp. 1986-1991
    • Roy, S.W.1    Gilbert, W.2
  • 43
    • 33644847698 scopus 로고    scopus 로고
    • The evolution of spliceosomal introns: Patterns, puzzles and progress
    • 16485020
    • Roy SW, Gilbert W (2006) The evolution of spliceosomal introns: patterns, puzzles and progress. Nat Rev Genet 7(3):211-221
    • (2006) Nat Rev Genet , vol.7 , Issue.3 , pp. 211-221
    • Roy, S.W.1    Gilbert, W.2
  • 44
    • 33845868781 scopus 로고    scopus 로고
    • Patterns of intron loss and gain in plants: Intron loss-dominated evolution and genome-wide comparison of O. sativa and A. thaliana
    • 17065597 10.1093/molbev/msl159 1:CAS:528:DC%2BD2sXnvFWmsw%3D%3D
    • Roy SW, Penny D (2007) Patterns of intron loss and gain in plants: intron loss-dominated evolution and genome-wide comparison of O. sativa and A. thaliana. Mol Biol Evol 24(1):171-181
    • (2007) Mol Biol Evol , vol.24 , Issue.1 , pp. 171-181
    • Roy, S.W.1    Penny, D.2
  • 45
    • 59349107038 scopus 로고    scopus 로고
    • Mystery of intron gain: New data and new models
    • 19070397 10.1016/j.tig.2008.11.004 1:CAS:528:DC%2BD1MXhs1ais74%3D
    • Roy SW, Irimia M (2009) Mystery of intron gain: new data and new models. Trends Genet 25(2):67-73
    • (2009) Trends Genet , vol.25 , Issue.2 , pp. 67-73
    • Roy, S.W.1    Irimia, M.2
  • 46
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • 623-656
    • Shannon CE (1948) A mathematical theory of communication. Bell Syst Tech J 27:379-423, 623-656
    • (1948) Bell Syst Tech J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 47
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • 16928733 10.1093/bioinformatics/btl446 1:CAS:528:DC%2BD28XhtFKlsbfI
    • Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinform Biol Insights 22(21):2688-2690
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 48
    • 15944384932 scopus 로고    scopus 로고
    • Conservation versus parallel gains in intron evolution
    • 15788746 10.1093/nar/gki316 1:CAS:528:DC%2BD2MXjtlens7o%3D
    • Sverdlov AV, Rogozin IB, Babenko VN, Koonin EV (2005) Conservation versus parallel gains in intron evolution. Nucleic Acids Res Suppl 33(6):1741-1748
    • (2005) Nucleic Acids Res , vol.33 , Issue.6 , pp. 1741-1748
    • Sverdlov, A.V.1    Rogozin, I.B.2    Babenko, V.N.3    Koonin, E.V.4
  • 50
    • 0033621045 scopus 로고    scopus 로고
    • Late changes in spliceosomal introns define clades in vertebrate evolution
    • 10.1073/pnas.96.18.10267 1:CAS:528:DyaK1MXlvFensrY%3D
    • Venkatesh B, Ning Y, Brenner S (1999) Late changes in spliceosomal introns define clades in vertebrate evolution. Proc Nat Acad Sci USA 96(18):10,267-10,271
    • (1999) Proc Nat Acad Sci USA , vol.96 , Issue.18 , pp. 10
    • Venkatesh, B.1    Ning, Y.2    Brenner, S.3
  • 51
    • 0035949652 scopus 로고    scopus 로고
    • Molecular synapomorphies resolve evolutionary relationships of extant jawed vertebrates
    • 11553795 10.1073/pnas.201415598 1:CAS:528:DC%2BD3MXnt1yqtbY%3D
    • Venkatesh B, Erdmann MV, Brenner S (2001) Molecular synapomorphies resolve evolutionary relationships of extant jawed vertebrates. Proc Nat Acad Sci USA 98(20):11382-11387
    • (2001) Proc Nat Acad Sci USA , vol.98 , Issue.20 , pp. 11382-11387
    • Venkatesh, B.1    Erdmann, M.V.2    Brenner, S.3
  • 52
    • 0042672578 scopus 로고    scopus 로고
    • Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information
    • 12893252 10.1016/S0006-291X(03)01182-3 1:CAS:528:DC%2BD3sXlvVCrsrw%3D
    • Weckwerth W, Selbig J (2003) Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information. Biochem Biophys Res Commun 307(3):516-21
    • (2003) Biochem Biophys Res Commun , vol.307 , Issue.3 , pp. 516-521
    • Weckwerth, W.1    Selbig, J.2
  • 53
    • 70450202479 scopus 로고    scopus 로고
    • Common introns within orthologous genes: Software and application to plants
    • 10.1093/bib/bbp051 1:CAS:528:DC%2BD1MXhsVKntbjF
    • Wilkerson MD, Ru Y, Brendel VP (2009) Common introns within orthologous genes: software and application to plants. Brief Bioinforma 10(6):631-644
    • (2009) Brief Bioinforma , vol.10 , Issue.6 , pp. 631-644
    • Wilkerson, M.D.1    Ru, Y.2    Brendel, V.P.3
  • 55
    • 35848952076 scopus 로고    scopus 로고
    • Support for the coelomata clade of animals from a rigorous analysis of the pattern of intron conservation
    • 17893400 10.1093/molbev/msm207 1:CAS:528:DC%2BD2sXhtlGmtr7K
    • Zheng J, Rogozin IB, Koonin EV, Przytycka TM (2007) Support for the coelomata clade of animals from a rigorous analysis of the pattern of intron conservation. Mol Biol Evol 24(11):2583-2592
    • (2007) Mol Biol Evol , vol.24 , Issue.11 , pp. 2583-2592
    • Zheng, J.1    Rogozin, I.B.2    Koonin, E.V.3    Przytycka, T.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.