-
1
-
-
0018263844
-
Why genes in pieces?
-
10.1038/271501a0. 622185
-
Why genes in pieces? W Gilbert, Nature 1978 271 5645 501 10.1038/271501a0 622185
-
(1978)
Nature
, vol.271
, Issue.5645
, pp. 501
-
-
Gilbert, W.1
-
2
-
-
0344198459
-
The spliceosome: The most complex macromolecular machine in the cell?
-
10.1002/bies.10394. 14635248
-
The spliceosome: the most complex macromolecular machine in the cell? TW Nilsen, Bioessays 2003 25 12 1147 1149 10.1002/bies.10394 14635248
-
(2003)
Bioessays
, vol.25
, Issue.12
, pp. 1147-1149
-
-
Nilsen, T.W.1
-
3
-
-
16344385067
-
Complex spliceosomal organization ancestral to extant eukaryotes
-
10.1093/molbev/msi091. 15659557
-
Complex spliceosomal organization ancestral to extant eukaryotes. L Collins D Penny, Mol Biol Evol 2005 22 4 1053 1066 10.1093/molbev/msi091 15659557
-
(2005)
Mol Biol Evol
, vol.22
, Issue.4
, pp. 1053-1066
-
-
Collins, L.1
Penny, D.2
-
4
-
-
0027771868
-
On the ancient nature of introns
-
10.1016/0378-1119(93)90058-B. 8276250
-
On the ancient nature of introns. W Gilbert M Glynias, Gene 1993 135 1-2 137 144 10.1016/0378-1119(93)90058-B 8276250
-
(1993)
Gene
, vol.135
, Issue.1-2
, pp. 137-144
-
-
Gilbert, W.1
Glynias, M.2
-
5
-
-
0022552726
-
The generality of self-splicing RNA: Relationship to nuclear mRNA splicing
-
10.1016/0092-8674(86)90751-8. 2417724
-
The generality of self-splicing RNA: relationship to nuclear mRNA splicing. TR Cech, Cell 1986 44 2 207 210 10.1016/0092-8674(86)90751-8 2417724
-
(1986)
Cell
, vol.44
, Issue.2
, pp. 207-210
-
-
Cech, T.R.1
-
6
-
-
34250660469
-
The spliceosome: A ribozyme at heart?
-
10.1515/BC.2007.080. 17570821
-
The spliceosome: a ribozyme at heart? S Valadkhan, Biol Chem 2007 388 7 693 697 10.1515/BC.2007.080 17570821
-
(2007)
Biol Chem
, vol.388
, Issue.7
, pp. 693-697
-
-
Valadkhan, S.1
-
7
-
-
41749109563
-
Crystal structure of a self-spliced group II intron
-
10.1126/science.1153803. 18388288
-
Crystal structure of a self-spliced group II intron. N Toor KS Keating SD Taylor AM Pyle, Science 2008 320 5872 77 82 10.1126/science.1153803 18388288
-
(2008)
Science
, vol.320
, Issue.5872
, pp. 77-82
-
-
Toor, N.1
Keating, K.S.2
Taylor, S.D.3
Pyle, A.M.4
-
8
-
-
0025810123
-
Intron phylogeny: A new hypothesis
-
10.1016/0168-9525(91)90377-3. 2068786
-
Intron phylogeny: a new hypothesis. T Cavalier-Smith, Trends Genet 1991 7 5 145 148 10.1016/0168-9525(91)90377-3 2068786
-
(1991)
Trends Genet
, vol.7
, Issue.5
, pp. 145-148
-
-
Cavalier-Smith, T.1
-
9
-
-
33644783626
-
Introns and the origin of nucleus-cytosol compartmentalization
-
10.1038/nature04531. 16511485
-
Introns and the origin of nucleus-cytosol compartmentalization. W Martin EV Koonin, Nature 2006 440 7080 41 45 10.1038/nature04531 16511485
-
(2006)
Nature
, vol.440
, Issue.7080
, pp. 41-45
-
-
Martin, W.1
Koonin, E.V.2
-
10
-
-
0033525788
-
Mitochondrial evolution
-
10.1126/science.283.5407.1476. 10066161
-
Mitochondrial evolution. MW Gray G Burger BF Lang, Science 1999 283 5407 1476 1481 10.1126/science.283.5407.1476 10066161
-
(1999)
Science
, vol.283
, Issue.5407
, pp. 1476-1481
-
-
Gray, M.W.1
Burger, G.2
Lang, B.F.3
-
11
-
-
0042266921
-
Reconstruction of the proto-mitochondrial metabolism
-
10.1126/science.1085463. 12893934
-
Reconstruction of the proto-mitochondrial metabolism. T Gabaldán MA Huynen, Science 2003 301 5633 609 10.1126/science.1085463 12893934
-
(2003)
Science
, vol.301
, Issue.5633
, pp. 609
-
-
Gabaldán, T.1
Huynen, M.A.2
-
12
-
-
0742323538
-
Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
-
10.1038/nrg1271. 14735123
-
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. JN Timmis MA Ayliffe CY Huang W Martin, Nat Rev Genet 2004 5 2 123 135 10.1038/nrg1271 14735123
-
(2004)
Nat Rev Genet
, vol.5
, Issue.2
, pp. 123-135
-
-
Timmis, J.N.1
Ayliffe, M.A.2
Huang, C.Y.3
Martin, W.4
-
13
-
-
33644603687
-
The rise and falls of introns
-
10.1038/sj.hdy.6800791. 16449982
-
The rise and falls of introns. R Belshaw D Bensasson, Heredity 2006 96 3 208 213 10.1038/sj.hdy.6800791 16449982
-
(2006)
Heredity
, vol.96
, Issue.3
, pp. 208-213
-
-
Belshaw, R.1
Bensasson, D.2
-
14
-
-
33644847698
-
The evolution of spliceosomal introns: Patterns, puzzles and progress
-
16485020
-
The evolution of spliceosomal introns: patterns, puzzles and progress. SW Roy W Gilbert, Nat Rev Genet 2006 7 3 211 221 16485020
-
(2006)
Nat Rev Genet
, vol.7
, Issue.3
, pp. 211-221
-
-
Roy, S.W.1
Gilbert, W.2
-
15
-
-
46149104413
-
Mechanisms of intron gain and loss in Cryptococcus
-
10.1186/gb-2008-9-1-r24. 18234113
-
Mechanisms of intron gain and loss in Cryptococcus. TJ Sharpton DE Neafsey JE Galagan JW Taylor, Genome Biol 2008 9 1 24 10.1186/gb-2008-9-1-r24 18234113
-
(2008)
Genome Biol
, vol.9
, Issue.1
, pp. 1824
-
-
Sharpton, T.J.1
Neafsey, D.E.2
Galagan, J.E.3
Taylor, J.W.4
-
16
-
-
33845868781
-
Patterns of intron loss and gain in plants: Intron loss-dominated evolution and genome-wide comparison of O. sativa and A. thaliana
-
10.1093/molbev/msl159. 17065597
-
Patterns of intron loss and gain in plants: intron loss-dominated evolution and genome-wide comparison of O. sativa and A. thaliana. SW Roy D Penny, Mol Biol Evol 2007 24 1 171 181 10.1093/molbev/msl159 17065597
-
(2007)
Mol Biol Evol
, vol.24
, Issue.1
, pp. 171-181
-
-
Roy, S.W.1
Penny, D.2
-
17
-
-
33744789972
-
Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number
-
10.1101/gr.4845406. 16702411
-
Very little intron loss/gain in Plasmodium: intron loss/gain mutation rates and intron number. SW Roy DL Hartl, Genome Res 2006 16 6 750 756 10.1101/gr.4845406 16702411
-
(2006)
Genome Res
, vol.16
, Issue.6
, pp. 750-756
-
-
Roy, S.W.1
Hartl, D.L.2
-
18
-
-
33748029468
-
High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes
-
10.1093/molbev/msl017. 16720694
-
High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes. DG Knowles A McLysaght, Mol Biol Evol 2006 23 8 1548 1557 10.1093/molbev/msl017 16720694
-
(2006)
Mol Biol Evol
, vol.23
, Issue.8
, pp. 1548-1557
-
-
Knowles, D.G.1
McLysaght, A.2
-
19
-
-
37549026866
-
Intron loss and gain in Drosophila
-
10.1093/molbev/msm235. 17965454
-
Intron loss and gain in Drosophila. J Coulombe-Huntington J Majewski, Mol Biol Evol 2007 24 12 2842 2850 10.1093/molbev/msm235 17965454
-
(2007)
Mol Biol Evol
, vol.24
, Issue.12
, pp. 2842-2850
-
-
Coulombe-Huntington, J.1
Majewski, J.2
-
20
-
-
42949174108
-
Comparative genomic analysis of fungal genomes reveals intron-rich ancestors
-
10.1186/gb-2007-8-10-r223. 17949488
-
Comparative genomic analysis of fungal genomes reveals intron-rich ancestors. JE Stajich FS Dietrich SW Roy, Genome Biol 2007 8 10 223 10.1186/gb-2007-8-10-r223 17949488
-
(2007)
Genome Biol
, vol.8
, Issue.10
, pp. 18223
-
-
Stajich, J.E.1
Dietrich, F.S.2
Roy, S.W.3
-
21
-
-
33845982198
-
Characterization of intron loss events in mammals
-
10.1101/gr.5703406. 17108319
-
Characterization of intron loss events in mammals. J Coulombe-Huntington J Majewski, Genome Res 2007 17 1 23 32 10.1101/gr.5703406 17108319
-
(2007)
Genome Res
, vol.17
, Issue.1
, pp. 23-32
-
-
Coulombe-Huntington, J.1
Majewski, J.2
-
22
-
-
33847031355
-
A glimpse of a putative pre-intron phase of eukaryotic evolution
-
10.1016/j.tig.2007.01.001. 17239982
-
A glimpse of a putative pre-intron phase of eukaryotic evolution. AV Sverdlov M Csuros IB Rogozin EV Koonin, Trends Genet 2007 23 3 105 108 10.1016/j.tig.2007.01.001 17239982
-
(2007)
Trends Genet
, vol.23
, Issue.3
, pp. 105-108
-
-
Sverdlov, A.V.1
Csuros, M.2
Rogozin, I.B.3
Koonin, E.V.4
-
23
-
-
15944384932
-
Conservation versus parallel gains in intron evolution
-
10.1093/nar/gki316. 15788746
-
Conservation versus parallel gains in intron evolution. AV Sverdlov IB Rogozin VN Babenko EV Koonin, Nucleic Acids Res 2005 33 6 1741 1748 10.1093/nar/gki316 15788746
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.6
, pp. 1741-1748
-
-
Sverdlov, A.V.1
Rogozin, I.B.2
Babenko, V.N.3
Koonin, E.V.4
-
24
-
-
4143093598
-
A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes
-
10.1093/molbev/msh160. 15155797
-
A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes. C Esser N Ahmadinejad C Wiegand C Rotte F Sebastiani G Gelius-Dietrich K Henze E Kretschmann E Richly D Leister, et al. Mol Biol Evol 2004 21 9 1643 1660 10.1093/molbev/msh160 15155797
-
(2004)
Mol Biol Evol
, vol.21
, Issue.9
, pp. 1643-1660
-
-
Esser, C.1
Ahmadinejad, N.2
Wiegand, C.3
Rotte, C.4
Sebastiani, F.5
Gelius-Dietrich, G.6
Henze, K.7
Kretschmann, E.8
Richly, E.9
Leister, D.10
-
25
-
-
34547894695
-
Reconstructing the evolution of the mitochondrial ribosomal proteome
-
10.1093/nar/gkm441. 17604309
-
Reconstructing the evolution of the mitochondrial ribosomal proteome. P Smits JA Smeitink LP van den Heuvel MA Huynen TJ Ettema, Nucleic Acids Res 2007 35 14 4686 4703 10.1093/nar/gkm441 17604309
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.14
, pp. 4686-4703
-
-
Smits, P.1
Smeitink, J.A.2
Den Van, P.H.L.3
Huynen, M.A.4
Ettema, T.J.5
-
26
-
-
27544434211
-
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes
-
10.1093/bioinformatics/bti1124. 16204094
-
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes. T Gabaldán MA Huynen, Bioinformatics 2005 21 Suppl 2 i144 ii150 10.1093/bioinformatics/bti1124 16204094
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL 2
-
-
Gabaldán, T.1
Huynen, M.A.2
-
27
-
-
17444385984
-
Tracing the Evolution of a Large Protein Complex in the Eukaryotes, NADH:Ubiquinone Oxidoreductase (Complex I)
-
10.1016/j.jmb.2005.02.067. 15843018
-
Tracing the Evolution of a Large Protein Complex in the Eukaryotes, NADH:Ubiquinone Oxidoreductase (Complex I). T Gabaldán D Rainey MA Huynen, J Mol Biol 2005 348 4 857 870 10.1016/j.jmb.2005.02.067 15843018
-
(2005)
J Mol Biol
, vol.348
, Issue.4
, pp. 857-870
-
-
Gabaldán, T.1
Rainey, D.2
Huynen, M.A.3
-
28
-
-
0032753460
-
Association of intron phases with conservation at splice site sequences and evolution of spliceosomal introns
-
10555284
-
Association of intron phases with conservation at splice site sequences and evolution of spliceosomal introns. M Long M Deutsch, Mol Biol Evol 1999 16 11 1528 1534 10555284
-
(1999)
Mol Biol Evol
, vol.16
, Issue.11
, pp. 1528-1534
-
-
Long, M.1
Deutsch, M.2
-
29
-
-
0037197986
-
Intron evolution as a population-genetic process
-
10.1073/pnas.092595699. 11983904
-
Intron evolution as a population-genetic process. M Lynch, Proc Natl Acad Sci USA 2002 99 9 6118 6123 10.1073/pnas.092595699 11983904
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.9
, pp. 6118-6123
-
-
Lynch, M.1
-
30
-
-
33745612963
-
A gradient in the distribution of introns in eukaryotic genes
-
10.1007/s00239-005-0261-6. 16736103
-
A gradient in the distribution of introns in eukaryotic genes. A Ruvinsky W Ward, J Mol Evol 2006 63 1 136 141 10.1007/s00239-005-0261-6 16736103
-
(2006)
J Mol Evol
, vol.63
, Issue.1
, pp. 136-141
-
-
Ruvinsky, A.1
Ward, W.2
-
31
-
-
3042548834
-
The evolutionary gain of spliceosomal introns: Sequence and phase preferences
-
10.1093/molbev/msh120. 15014153
-
The evolutionary gain of spliceosomal introns: sequence and phase preferences. WG Qiu N Schisler A Stoltzfus, Mol Biol Evol 2004 21 7 1252 1263 10.1093/molbev/msh120 15014153
-
(2004)
Mol Biol Evol
, vol.21
, Issue.7
, pp. 1252-1263
-
-
Qiu, W.G.1
Schisler, N.2
Stoltzfus, A.3
-
32
-
-
38349114864
-
Evolutionary dynamics of introns in plastid-derived genes in plants: Saturation nearly reached but slow intron gain continues
-
10.1093/molbev/msm234. 17974547
-
Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues. MK Basu IB Rogozin O Deusch T Dagan W Martin EV Koonin, Mol Biol Evol 2008 25 1 111 119 10.1093/molbev/msm234 17974547
-
(2008)
Mol Biol Evol
, vol.25
, Issue.1
, pp. 111-119
-
-
Basu, M.K.1
Rogozin, I.B.2
Deusch, O.3
Dagan, T.4
Martin, W.5
Koonin, E.V.6
-
33
-
-
33748797692
-
Very little intron gain in Entamoeba histolytica genes laterally transferred from prokaryotes
-
10.1093/molbev/msl061. 16847043
-
Very little intron gain in Entamoeba histolytica genes laterally transferred from prokaryotes. SW Roy M Irimia D Penny, Mol Biol Evol 2006 23 10 1824 1827 10.1093/molbev/msl061 16847043
-
(2006)
Mol Biol Evol
, vol.23
, Issue.10
, pp. 1824-1827
-
-
Roy, S.W.1
Irimia, M.2
Penny, D.3
-
34
-
-
27444442657
-
The tree of eukaryotes
-
10.1016/j.tree.2005.09.005. 16701456
-
The tree of eukaryotes. PJ Keeling G Burger DG Durnford BF Lang RW Lee RE Pearlman AJ Roger MW Gray, Trends Ecol Evol 2005 20 12 670 676 10.1016/j.tree.2005.09.005 16701456
-
(2005)
Trends Ecol Evol
, vol.20
, Issue.12
, pp. 670-676
-
-
Keeling, P.J.1
Burger, G.2
Durnford, D.G.3
Lang, B.F.4
Lee, R.W.5
Pearlman, R.E.6
Roger, A.J.7
Gray, M.W.8
-
35
-
-
46249118523
-
Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach
-
10.1093/molbev/msn039. 18296415
-
Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach. M Csuros IB Rogozin EV Koonin, Mol Biol Evol 2008 25 5 903 911 10.1093/molbev/msn039 18296415
-
(2008)
Mol Biol Evol
, vol.25
, Issue.5
, pp. 903-911
-
-
Csuros, M.1
Rogozin, I.B.2
Koonin, E.V.3
-
36
-
-
0042921194
-
Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution
-
10.1016/S0960-9822(03)00558-X. 12956953
-
Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. IB Rogozin YI Wolf AV Sorokin BG Mirkin EV Koonin, Curr Biol 2003 13 17 1512 1517 10.1016/S0960-9822(03)00558-X 12956953
-
(2003)
Curr Biol
, vol.13
, Issue.17
, pp. 1512-1517
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Sorokin, A.V.3
Mirkin, B.G.4
Koonin, E.V.5
-
37
-
-
0028825276
-
Automated construction and graphical presentation of protein blocks from unaligned sequences
-
10.1016/0378-1119(95)00486-P. 7590261
-
Automated construction and graphical presentation of protein blocks from unaligned sequences. S Henikoff JG Henikoff WJ Alford S Pietrokovski, Gene 1995 163 2 C17 26 10.1016/0378-1119(95)00486-P 7590261
-
(1995)
Gene
, vol.163
, Issue.2
-
-
Henikoff, S.1
Henikoff, J.G.2
Alford, W.J.3
Pietrokovski, S.4
-
38
-
-
37549021457
-
Patterns of intron gain and conservation in eukaryotic genes
-
10.1186/1471-2148-7-192. 17935625
-
Patterns of intron gain and conservation in eukaryotic genes. L Carmel IB Rogozin YI Wolf EV Koonin, BMC Evol Biol 2007 7 192 10.1186/1471-2148-7-192 17935625
-
(2007)
BMC Evol Biol
, vol.7
, pp. 192
-
-
Carmel, L.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
39
-
-
84872246297
-
New maximum likelihood estimators for eukaryotic intron evolution
-
10.1371/journal.pcbi.0010079. 16389300
-
New maximum likelihood estimators for eukaryotic intron evolution. HD Nguyen M Yoshihama N Kenmochi, PLoS Comput Biol 2005 1 7 79 10.1371/journal. pcbi.0010079 16389300
-
(2005)
PLoS Comput Biol
, vol.1
, Issue.7
, pp. 579
-
-
Nguyen, H.D.1
Yoshihama, M.2
Kenmochi, N.3
-
40
-
-
1942501620
-
The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) highlights distinctive evolutionary trends in the chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae
-
10.1093/molbev/msh099. 15014170
-
The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) highlights distinctive evolutionary trends in the chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae. JF Pombert C Otis C Lemieux M Turmel, Mol Biol Evol 2004 21 5 922 935 10.1093/molbev/msh099 15014170
-
(2004)
Mol Biol Evol
, vol.21
, Issue.5
, pp. 922-935
-
-
Pombert, J.F.1
Otis, C.2
Lemieux, C.3
Turmel, M.4
-
41
-
-
34047227131
-
The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: Organelle genomes of the smallest eukaryote are examples of compaction
-
10.1093/molbev/msm012. 17251180
-
The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: organelle genomes of the smallest eukaryote are examples of compaction. S Robbens E Derelle C Ferraz J Wuyts H Moreau Y Van de Peer, Mol Biol Evol 2007 24 4 956 968 10.1093/molbev/msm012 17251180
-
(2007)
Mol Biol Evol
, vol.24
, Issue.4
, pp. 956-968
-
-
Robbens, S.1
Derelle, E.2
Ferraz, C.3
Wuyts, J.4
Moreau, H.5
De, P.Y.V.6
-
42
-
-
0024462103
-
Evidence that introns arose at proto-splice sites
-
2792080
-
Evidence that introns arose at proto-splice sites. NJ Dibb AJ Newman, Embo J 1989 8 7 2015 2021 2792080
-
(1989)
Embo J
, vol.8
, Issue.7
, pp. 2015-2021
-
-
Dibb, N.J.1
Newman, A.J.2
-
43
-
-
0037975529
-
A new Drosophila spliceosomal intron position is common in plants
-
10.1073/pnas.0731952100. 12750476
-
A new Drosophila spliceosomal intron position is common in plants. R Tarrio F Rodriguez-Trelles FJ Ayala, Proc Natl Acad Sci USA 2003 100 11 6580 6583 10.1073/pnas.0731952100 12750476
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.11
, pp. 6580-6583
-
-
Tarrio, R.1
Rodriguez-Trelles, F.2
Ayala, F.J.3
-
44
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
10.1093/nar/gkg095. 12520024
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. B Boeckmann A Bairoch R Apweiler MC Blatter A Estreicher E Gasteiger MJ Martin K Michoud C O'Donovan I Phan, et al. Nucleic Acids Res 2003 31 1 365 370 10.1093/nar/gkg095 12520024
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
-
46
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
10.1093/nar/25.17.3389. 9254694
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman, Nucleic Acids Res 1997 25 17 3389 3402 10.1093/nar/25.17.3389 9254694
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
47
-
-
0031007907
-
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
-
10.1038/387493a0. 9168110
-
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. BF Lang G Burger CJ O'Kelly R Cedergren GB Golding C Lemieux D Sankoff M Turmel MW Gray, Nature 1997 387 6632 493 497 10.1038/387493a0 9168110
-
(1997)
Nature
, vol.387
, Issue.6632
, pp. 493-497
-
-
Lang, B.F.1
Burger, G.2
O'Kelly, C.J.3
Cedergren, R.4
Golding, G.B.5
Lemieux, C.6
Sankoff, D.7
Turmel, M.8
Gray, M.W.9
-
48
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
10.1186/1471-2105-5-113. 15318951
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity. RC Edgar, BMC Bioinformatics 2004 5 1 113 10.1186/1471-2105-5-113 15318951
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.1
, pp. 113
-
-
Edgar, R.C.1
-
49
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
11932250
-
BLAT - the BLAST-like alignment tool. WJ Kent, Genome Res 2002 12 4 656 664 11932250
-
(2002)
Genome Res
, vol.12
, Issue.4
, pp. 656-664
-
-
Kent, W.J.1
-
50
-
-
46649114758
-
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
-
10.1186/1471-2105-9-278. 18554390
-
Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species. O Keller F Odronitz M Stanke M Kollmar S Waack, BMC Bioinformatics 2008 9 278 10.1186/1471-2105-9-278 18554390
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 278
-
-
Keller, O.1
Odronitz, F.2
Stanke, M.3
Kollmar, M.4
Waack, S.5
-
51
-
-
0026410103
-
Automated assembly of protein blocks for database searching
-
10.1093/nar/19.23.6565. 1754394
-
Automated assembly of protein blocks for database searching. S Henikoff JG Henikoff, Nucleic Acids Res 1991 19 23 6565 6572 10.1093/nar/19.23.6565 1754394
-
(1991)
Nucleic Acids Res
, vol.19
, Issue.23
, pp. 6565-6572
-
-
Henikoff, S.1
Henikoff, J.G.2
-
52
-
-
0032927161
-
Topological bias and inconsistency of maximum likelihood using wrong models
-
10331281
-
Topological bias and inconsistency of maximum likelihood using wrong models. WJ Bruno AL Halpern, Mol Biol Evol 1999 16 4 564 566 10331281
-
(1999)
Mol Biol Evol
, vol.16
, Issue.4
, pp. 564-566
-
-
Bruno, W.J.1
Halpern, A.L.2
-
53
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
10.1093/bioinformatics/bti263. 15647292
-
ProtTest: selection of best-fit models of protein evolution. F Abascal R Zardoya D Posada, Bioinformatics 2005 21 9 2104 2105 10.1093/bioinformatics/ bti263 15647292
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
54
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520. 14530136
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 5 696 704 10.1080/10635150390235520 14530136
-
(2003)
Syst Biol
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
56
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
11319253
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. S Whelan N Goldman, Mol Biol Evol 2001 18 5 691 699 11319253
-
(2001)
Mol Biol Evol
, vol.18
, Issue.5
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
57
-
-
35348896591
-
The Chlamydomonas genome reveals the evolution of key animal and plant functions
-
10.1126/science.1143609. 17932292
-
The Chlamydomonas genome reveals the evolution of key animal and plant functions. SS Merchant SE Prochnik O Vallon EH Harris SJ Karpowicz GB Witman A Terry A Salamov LK Fritz-Laylin L Marechal-Drouard, et al. Science 2007 318 5848 245 250 10.1126/science.1143609 17932292
-
(2007)
Science
, vol.318
, Issue.5848
, pp. 245-250
-
-
Merchant, S.S.1
Prochnik, S.E.2
Vallon, O.3
Harris, E.H.4
Karpowicz, S.J.5
Witman, G.B.6
Terry, A.7
Salamov, A.8
Fritz-Laylin, L.K.9
Marechal-Drouard, L.10
-
58
-
-
6044252163
-
The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism
-
10.1126/science.1101156. 15459382
-
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. EV Armbrust JA Berges C Bowler BR Green D Martinez NH Putnam S Zhou AE Allen KE Apt M Bechner, et al. Science 2004 306 5693 79 86 10.1126/science.1101156 15459382
-
(2004)
Science
, vol.306
, Issue.5693
, pp. 79-86
-
-
Armbrust, E.V.1
Berges, J.A.2
Bowler, C.3
Green, B.R.4
Martinez, D.5
Putnam, N.H.6
Zhou, S.7
Allen, A.E.8
Apt, K.E.9
Bechner, M.10
-
59
-
-
22244437571
-
The genome of the kinetoplastid parasite, Leishmania major
-
10.1126/science.1112680. 16020728
-
The genome of the kinetoplastid parasite, Leishmania major. AC Ivens CS Peacock EA Worthey L Murphy G Aggarwal M Berriman E Sisk MA Rajandream E Adlem R Aert, et al. Science 2005 309 5733 436 442 10.1126/science.1112680 16020728
-
(2005)
Science
, vol.309
, Issue.5733
, pp. 436-442
-
-
Ivens, A.C.1
Peacock, C.S.2
Worthey, E.A.3
Murphy, L.4
Aggarwal, G.5
Berriman, M.6
Sisk, E.7
Rajandream, M.A.8
Adlem, E.9
Aert, R.10
-
60
-
-
60349108359
-
Evolution: Revisiting the root of the eukaryote tree
-
10.1016/j.cub.2008.12.032. 19243692
-
Evolution: revisiting the root of the eukaryote tree. AJ Roger AG Simpson, Curr Biol 2009 19 4 165 167 10.1016/j.cub.2008.12.032 19243692
-
(2009)
Curr Biol
, vol.19
, Issue.4
, pp. 18165-167
-
-
Roger, A.J.1
Simpson, A.G.2
|