-
1
-
-
78649830305
-
Conformational plasticity of RNA for target recognition as revealed by the 2.15 Å crystal structure of a human IgG-aptamer complex
-
Y. Nomura, S. Sugiyama, T. Sakamoto, S. Miyakawa, H. Adachi, K. Takano, S. Murakami, T. Inoue, Y. Mori, Y. Nakamura, and H. Matsumura Conformational plasticity of RNA for target recognition as revealed by the 2.15 Å crystal structure of a human IgG-aptamer complex Nucleic Acids Res. 38 2010 7822 7829
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7822-7829
-
-
Nomura, Y.1
Sugiyama, S.2
Sakamoto, T.3
Miyakawa, S.4
Adachi, H.5
Takano, K.6
Murakami, S.7
Inoue, T.8
Mori, Y.9
Nakamura, Y.10
Matsumura, H.11
-
2
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
A. Sanyal, B.R. Lajoie, G. Jain, and J. Dekker The long-range interaction landscape of gene promoters Nature 489 2012 109 113
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
3
-
-
62249156218
-
Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch
-
A. Serganov, L. Huang, and D.J. Patel Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch Nature 458 2009 233 237
-
(2009)
Nature
, vol.458
, pp. 233-237
-
-
Serganov, A.1
Huang, L.2
Patel, D.J.3
-
4
-
-
0017116135
-
Theoretical calculations of the helix-coil transition of DNA in the presence of large, cooperatively binding ligands
-
J.D. McGhee Theoretical calculations of the helix-coil transition of DNA in the presence of large, cooperatively binding ligands Biopolymers 15 2004 1345 1375
-
(2004)
Biopolymers
, vol.15
, pp. 1345-1375
-
-
McGhee, J.D.1
-
5
-
-
0021457679
-
Ionic and structural effects on the thermal helix-coil transition of DNA complexed with natural and synthetic polyamines
-
T.J. Thomas, and V.A. Bloomfield Ionic and structural effects on the thermal helix-coil transition of DNA complexed with natural and synthetic polyamines Biopolymers 23 1984 1295 1306
-
(1984)
Biopolymers
, vol.23
, pp. 1295-1306
-
-
Thomas, T.J.1
Bloomfield, V.A.2
-
6
-
-
79958013892
-
Single molecule studies of DNA-protamine interactions
-
L.H. Cree, R. Balhorn, and L.R. Brewer Single molecule studies of DNA-protamine interactions Protein Pept. Lett. 18 2011 802 810
-
(2011)
Protein Pept. Lett.
, vol.18
, pp. 802-810
-
-
Cree, L.H.1
Balhorn, R.2
Brewer, L.R.3
-
7
-
-
33645775325
-
Nucleic acid helix stability: Effects of salt concentration, cation valence and size and chain length
-
Z.J. Tan, and S.J. Chen Nucleic acid helix stability: effects of salt concentration, cation valence and size and chain length Biophys. J. 90 2006 1175 1190
-
(2006)
Biophys. J.
, vol.90
, pp. 1175-1190
-
-
Tan, Z.J.1
Chen, S.J.2
-
8
-
-
48449104689
-
Liquid crystalline phase behavior of high molecular weight DNA: A comparative study of the influence of metal ions of different size, charge and binding mode
-
N. Sundaresan, C.H. Suresh, T. Thomas, T.J. Thomas, and C.K.S. Pillai Liquid crystalline phase behavior of high molecular weight DNA: A comparative study of the influence of metal ions of different size, charge and binding mode Biomacromolecules 9 2008 1860 1869
-
(2008)
Biomacromolecules
, vol.9
, pp. 1860-1869
-
-
Sundaresan, N.1
Suresh, C.H.2
Thomas, T.3
Thomas, T.J.4
Pillai, C.K.S.5
-
9
-
-
33947470407
-
Formation of a three-stranded polynucleotide molecule
-
G. Felsenfeld, D.R. Davies, and A. Rich Formation of a three-stranded polynucleotide molecule J. Am. Chem. Soc. 79 1957 2023 2024
-
(1957)
J. Am. Chem. Soc.
, vol.79
, pp. 2023-2024
-
-
Felsenfeld, G.1
Davies, D.R.2
Rich, A.3
-
10
-
-
0027722144
-
Monovalent cation effects on intermolecular purine - purine - pyrimidine triple-helix formation
-
A.J. Cheng, and M.W. Van Dyke Monovalent cation effects on intermolecular purine-purine-pyrimidine triple-helix formation Nucleic Acids Res. 21 1993 5630 5635 (Pubitemid 24003088)
-
(1993)
Nucleic Acids Research
, vol.21
, Issue.24
, pp. 5630-5635
-
-
Cheng, A.-J.1
Van Dyke, M.W.2
-
11
-
-
0025942240
-
Sequence specificity in triple-helix formation: Experimental and theoretical studies of the effect of mismatches on triplex DNA stability
-
J.L. Mergny, J.S. Sun, M. Rougée, T. Montenay-Garestier, F. Barcelo, J. Chomilier, and C. Hélène Sequence specificity in triple-helix formation: experimental and theoretical studies of the effect of mismatches on triplex DNA stability Biochemistry 30 1991 9791 9798
-
(1991)
Biochemistry
, vol.30
, pp. 9791-9798
-
-
Mergny, J.L.1
Sun, J.S.2
Rougée, M.3
Montenay-Garestier, T.4
Barcelo, F.5
Chomilier, J.6
Hélène, C.7
-
12
-
-
52649177737
-
The triple helix: 50 years later, the outcome
-
M. Duca, P. Vekhoff, K. Oussedik, L. Halby, and P.B. Arimondo The triple helix: 50 years later, the outcome Nucleic Acids Res. 36 2008 5123 5138
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5123-5138
-
-
Duca, M.1
Vekhoff, P.2
Oussedik, K.3
Halby, L.4
Arimondo, P.B.5
-
13
-
-
0027743418
-
Selectivity of polyamines in triplex DNA stabilization
-
DOI 10.1021/bi00213a041
-
T. Thomas, and T.J. Thomas Selectivity of polyamines in triplex DNA stabilization Biochemistry 32 1993 14068 14074 (Pubitemid 24018263)
-
(1993)
Biochemistry
, vol.32
, Issue.50
, pp. 14068-14074
-
-
Thomas, T.1
Thomas, T.J.2
-
14
-
-
0032999550
-
Selectivity of spermine homologs on triplex DNA stabilization
-
T. Antony, T. Thomas, A. Shirahata, L.H. Sigal, and T.J. Thomas Selectivity of spermine homologs on triplex DNA stabilization Antisense Nucleic Acid Drug Dev. 9 1999 221 231 (Pubitemid 29248742)
-
(1999)
Antisense and Nucleic Acid Drug Development
, vol.9
, Issue.2
, pp. 221-231
-
-
Antony, T.1
Thomas, T.2
Shirahata, A.3
Sigal, L.H.4
Thomas, T.J.5
-
15
-
-
0041660898
-
Controlling nucleic acid secondary structure by intercalation: Effects of DNA strand length on coralyne-driven duplex disproportionation
-
DOI 10.1093/nar/gkg648
-
S.S. Jain, M. Polak, and N.V. Hud Controlling nucleic acid secondary structure by intercalation: effects of DNA strand length on coralyne-driven duplex disproportionation Nucleic Acids Res. 31 2003 4608 4615 (Pubitemid 37441820)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.15
, pp. 4608-4615
-
-
Jain, S.S.1
Polak, M.2
Hud, N.V.3
-
16
-
-
79951591766
-
New approaches toward recognition of nucleic acid triple helices
-
D.P. Arya New approaches toward recognition of nucleic acid triple helices Acc. Chem. Res. 44 2011 134 146
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 134-146
-
-
Arya, D.P.1
-
17
-
-
0034605181
-
DNA triple helix stabilization by aminoglycoside antibiotics
-
DOI 10.1016/S0960-894X(00)00372-3, PII S0960894X00003723
-
D.P. Arya, and R.L. Coffee Jr. DNA triple helix stabilization by aminoglycoside antibiotics Bioorg. Med. Chem. Lett. 10 2000 1897 1899 (Pubitemid 30663335)
-
(2000)
Bioorganic and Medicinal Chemistry Letters
, vol.10
, Issue.17
, pp. 1897-1899
-
-
Arya, D.P.1
Coffee Jr. R.Lane2
-
18
-
-
77954195336
-
Probing the recognition surface of a DNA triplex: Binding studies with intercalator-neomycin conjugates
-
L. Xue, H. Xi, S. Kumar, D. Gray, E. Davis, P. Hamilton, M. Skriba, and D.P. Arya Probing the recognition surface of a DNA triplex: binding studies with intercalator-neomycin conjugates Biochemistry 49 2010 5540 5552
-
(2010)
Biochemistry
, vol.49
, pp. 5540-5552
-
-
Xue, L.1
Xi, H.2
Kumar, S.3
Gray, D.4
Davis, E.5
Hamilton, P.6
Skriba, M.7
Arya, D.P.8
-
19
-
-
77951023778
-
Calorimetric and spectroscopic studies of aminoglycoside binding to AT-rich DNA triple helices
-
H. Xi, S. Kumar, L. Dosen-Micovic, and D.P. Arya Calorimetric and spectroscopic studies of aminoglycoside binding to AT-rich DNA triple helices Biochimie 92 2010 514 529
-
(2010)
Biochimie
, vol.92
, pp. 514-529
-
-
Xi, H.1
Kumar, S.2
Dosen-Micovic, L.3
Arya, D.P.4
-
20
-
-
0038682830
-
Combining the best in triplex recognition: Synthesis and nucleic acid binding of a BQQ-neomycin conjugate
-
DOI 10.1021/ja034241t
-
D.P. Arya, L. Xue, and P. Tennant Combining the best in triplex recognition: synthesis and nucleic acid binding of a BQQ-neomycin conjugate J. Am. Chem. Soc. 125 2003 8070 8071 (Pubitemid 36828550)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.27
, pp. 8070-8071
-
-
Arya, D.P.1
Xue, L.2
Tennant, P.3
-
21
-
-
0034833770
-
Aminoglycoside-nucleic acid interactions: Remarkable stabilization of DNA and RNA triple helices by neomycin
-
DOI 10.1021/ja003052x
-
D.P. Arya, R.L. Coffee Jr., B. Willis, and A.I. Abramovitch Aminoglycoside-nucleic acid interactions: remarkable stabilization of DNA and RNA triple helices by neomycin J. Am. Chem. Soc. 123 2001 5385 5395 (Pubitemid 32888504)
-
(2001)
Journal of the American Chemical Society
, vol.123
, Issue.23
, pp. 5385-5395
-
-
Arya, D.P.1
Coffee Jr., R.L.2
Willis, B.3
Abramovitch, A.I.4
-
22
-
-
0037033436
-
Pyrene-neomycin conjugate: Dual recognition of a DNA triple helix
-
L. Xue, I. Charles, and D.P. Arya Pyrene-neomycin conjugate: dual recognition of a triple helix Chem. Commun. 1 2002 70 71 (Pubitemid 34081608)
-
(2002)
Chemical Communications
, Issue.1
, pp. 70-71
-
-
Xue, L.1
Charles, I.2
Arya, D.P.3
-
24
-
-
0023802737
-
Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro
-
M. Cooney, G. Czernuszewicz, E.H. Postel, S.J. Flint, and M.E. Hogan Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro Science 241 1988 456 459
-
(1988)
Science
, vol.241
, pp. 456-459
-
-
Cooney, M.1
Czernuszewicz, G.2
Postel, E.H.3
Flint, S.J.4
Hogan, M.E.5
-
25
-
-
22144484155
-
Triple-forming oligonucleotides as potential tools for modulation of gene expression
-
DOI 10.2174/1568011054222300
-
F.A. Rogers, J.A. Lloyd, and P.M. Glazer Triplex-forming oligonucleotides as potential tools for modulation of gene expression Curr. Med. Chem. Anticancer Agents 5 2005 319 326 (Pubitemid 40974806)
-
(2005)
Current Medicinal Chemistry - Anti-Cancer Agents
, vol.5
, Issue.4
, pp. 319-326
-
-
Rogers, F.A.1
Lloyd, J.A.2
Glazer, P.M.3
-
26
-
-
47649089968
-
Targeting DNA with triplex-forming oligonucleotides to modify gene sequence
-
P. Simon, F. Cannata, J.P. Concordet, and C. Giovannangeli Targeting DNA with triplex-forming oligonucleotides to modify gene sequence Biochimie 90 2008 1109 1116
-
(2008)
Biochimie
, vol.90
, pp. 1109-1116
-
-
Simon, P.1
Cannata, F.2
Concordet, J.P.3
Giovannangeli, C.4
-
27
-
-
0029064780
-
Suppression of c-myc oncogene expression by a polyamine-complexed triplex forming oligonucleotide in MCF-7 breast cancer cells
-
T.J. Thomas, C.A. Faaland, M.A. Gallo, and T. Thomas Suppression of c-myc oncogene expression by a polyamine-complexed triplex forming oligonucleotide in MCF-7 breast cancer cells Nucleic Acids Res. 23 1995 3594 3599
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 3594-3599
-
-
Thomas, T.J.1
Faaland, C.A.2
Gallo, M.A.3
Thomas, T.4
-
28
-
-
4043134617
-
Triplex DNA-mediated downregulation of Ets2 expression results in growth inhibition and apoptosis in human prostate cancer cells
-
DOI 10.1093/nar/gkh744
-
G.M. Carbone, S. Napoli, A. Valentini, F. Cavalli, D.K. Watson, and C.V. Catapano Triplex DNA-mediated downregulation of Ets2 expression results in growth inhibition and apoptosis in human prostate cancer cells Nucleic Acids Res. 32 2004 4358 4367 (Pubitemid 39232308)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.14
, pp. 4358-4367
-
-
Carbone, G.M.1
Napoli, S.2
Valentini, A.3
Cavalli, F.4
Watson, D.K.5
Catapano, C.V.6
-
29
-
-
0035203647
-
Site-directed inhibition of DNA replication by triple helix formation
-
DOI 10.1096/fj.01-0440com
-
S. Diviacco, V. Rapozzi, L. Xodo, C. Helene, F. Quadrifoglio, and C. Giovannangeli Site-directed inhibition of DNA replication by triple helix formation FASEB J. 15 2001 2660 2668 (Pubitemid 33131092)
-
(2001)
FASEB Journal
, vol.15
, Issue.14
, pp. 2660-2668
-
-
Diviacco, S.1
Rapozzi, V.2
Xodo, L.3
Helene, C.4
Quadrifoglio, F.5
Giovannangeli, C.6
-
30
-
-
0029939657
-
Triplex DNA in the nucleus: Direct binding of triplex-specific antibodies and their effect on transcription, replication and cell growth
-
Y.M. Agazie, G.D. Burkholder, and J.S. Lee Triplex DNA in the nucleus: direct binding of triplex-specific antibodies and their effect on transcription, replication and cell growth Biochem. J. 316 1996 461 466 (Pubitemid 26182142)
-
(1996)
Biochemical Journal
, vol.316
, Issue.2
, pp. 461-466
-
-
Agazie, Y.M.1
Burkholder, G.D.2
Lee, J.S.3
-
31
-
-
33745786874
-
Recombination R-triplex: H-bonds contribution to stability as revealed with minor base substitutions for adenine
-
A.K. Shchyolkina, D.N. Kaluzhny, D.J. Arndt-Jovin, T.M. Jovin, and V.B. Zhurkin Recombination R-triplex: H-bonds contribution to stability as revealed with minor base substitutions for adenine Nucleic Acids Res. 34 2006 3239 3245
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 3239-3245
-
-
Shchyolkina, A.K.1
Kaluzhny, D.N.2
Arndt-Jovin, D.J.3
Jovin, T.M.4
Zhurkin, V.B.5
-
33
-
-
38449106276
-
Discovery of alternative DNA structures: A heroic decade (1979-1989)
-
DOI 10.2741/2744
-
S. Mirkin, and M. Front Discovery of alternative DNA structures: A heroic decade (1979-1989) Bioscience 13 2008 1064 1071 (Pubitemid 351594748)
-
(2008)
Frontiers in Bioscience
, vol.13
, Issue.3
, pp. 1064-1071
-
-
Mirkin, S.M.1
-
34
-
-
79955824412
-
Presence of divalent cation is not mandatory for the formation of intramolecular purine-motif triplex containing human c-jun protooncogene target
-
S. Kaushik, M. Kaushik, F. Svinarchuk, C. Malvy, S. Fermandjian, and S. Kukreti Presence of divalent cation is not mandatory for the formation of intramolecular purine-motif triplex containing human c-jun protooncogene target Biochemistry 50 2011 4132 4142
-
(2011)
Biochemistry
, vol.50
, pp. 4132-4142
-
-
Kaushik, S.1
Kaushik, M.2
Svinarchuk, F.3
Malvy, C.4
Fermandjian, S.5
Kukreti, S.6
-
36
-
-
0031605324
-
Stability and structure of model DNA triplexes and quadruplexes and their interactions with small ligands
-
R.H. Shafer Stability and structure of model DNA triplexes and quadruplexes and their interactions with small ligands Prog. Nucleic Acid Res. Mol. Biol. 59 1997 55 94
-
(1997)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.59
, pp. 55-94
-
-
Shafer, R.H.1
-
37
-
-
0029128420
-
UV spectroscopic identification and thermodynamic analysis of protonated third strand deoxycytidine residues at neutrality in the triplex d(C(+)-T)6:[d(A-G)6.d(C-T)6]; Evidence for a proton switch
-
L. Lavelle, and J.R. Fresco UV spectroscopic identification and thermodynamic analysis of protonated third strand deoxycytidine residues at neutrality in the triplex d(C(+)-T)6:[d(A-G)6.d(C-T)6]; evidence for a proton switch Nucleic Acids Res. 25 1995 2692 2705
-
(1995)
Nucleic Acids Res.
, vol.25
, pp. 2692-2705
-
-
Lavelle, L.1
Fresco, J.R.2
-
38
-
-
0032573199
-
Thermodynamic, kinetic, and conformational properties of a parallel intermolecular DNA triplex containing 5' and 3' junctions
-
DOI 10.1021/bi980057m
-
J.L. Asensio, H.S. Dosanjh, T.C. Jenkins, and A.N. Lane Thermodynamic, kinetic, and conformational properties of a parallel intermolecular DNA triplex containing 5′ and 3′ junctions Biochemistry 37 1998 15188 15198 (Pubitemid 28503248)
-
(1998)
Biochemistry
, vol.37
, Issue.43
, pp. 15188-15198
-
-
Asensio, J.L.1
Dosanjh, H.S.2
Jenkins, T.C.3
Lane, A.N.4
-
39
-
-
79953222279
-
Formation of stable DNA triplexes
-
K.R. Fox, and T. Brown Formation of stable DNA triplexes Biochem. Soc. Trans. 39 2011 629 634
-
(2011)
Biochem. Soc. Trans.
, vol.39
, pp. 629-634
-
-
Fox, K.R.1
Brown, T.2
-
41
-
-
0025945566
-
Binding of ethidium bromide to a DNA triple helix: Evidence for intercalation
-
P.V. Scaria, and R.H. Shafer Binding of ethidium bromide to a DNA triple helix, Evidence for intercalation J. Biol. Chem. 266 1991 5417 5423 (Pubitemid 21909510)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.9
, pp. 5417-5423
-
-
Scaria, P.V.1
Shafer, R.H.2
-
42
-
-
1642380887
-
Effects of Sodium Ions on DNA Duplex Oligomers: Improved Predictions of Melting Temperatures
-
DOI 10.1021/bi034621r
-
R. Owczarzy, Y. You, B.G. Moreira, J.A. Manthey, L. Huang, M.A. Behlke, and J.A. Walder Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures Biochemistry 43 2004 3537 3554 (Pubitemid 38391709)
-
(2004)
Biochemistry
, vol.43
, Issue.12
, pp. 3537-3554
-
-
Owczarzy, R.1
You, Y.2
Moreira, B.G.3
Manthey, J.A.4
Huang, L.5
Behlke, M.A.6
Walder, J.A.7
-
43
-
-
75649101762
-
DNA complexes containing joined triplex and duplex motifs: Melting behavior of intramolecular and bimolecular complexes with similar sequences
-
H.T. Lee, I. Khutsishvili, and A.L. Marky DNA complexes containing joined triplex and duplex motifs: melting behavior of intramolecular and bimolecular complexes with similar sequences J. Phys. Chem. B 114 2010 541 548
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 541-548
-
-
Lee, H.T.1
Khutsishvili, I.2
Marky, A.L.3
-
44
-
-
0033524401
-
Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA
-
DOI 10.1021/bi9820154
-
C.H. Spink, and J.B. Chaires Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA Biochemistry 38 1999 496 508 (Pubitemid 29035721)
-
(1999)
Biochemistry
, vol.38
, Issue.1
, pp. 496-508
-
-
Spink, C.H.1
Chaires, J.B.2
-
46
-
-
0033567007
-
Evidence from CD spectra and melting temperatures for stable Hoogsteen-paired oligomer duplexes derived from DNA and hybrid triplexes
-
DOI 10.1093/nar/27.16.3371
-
G.M. Hashem, J.D. Wen, Q. Do, and D.M. Gray Evidence from CD spectra and melting temperatures for stable Hoogsteen-paired oligomer duplexes derived from DNA and hybrid triplexes Nucleic Acids Res. 27 1999 3371 3379 (Pubitemid 29381332)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.16
, pp. 3371-3379
-
-
Hashem, G.M.1
Wen, J.-D.2
Do, Q.3
Gray, D.M.4
-
47
-
-
39149132124
-
Circular dichroism to determine binding mode and affinity of ligand-DNA interactions
-
N.C. Garbett, P.A. Ragazzon, and J.B. Chaires Circular dichroism to determine binding mode and affinity of ligand-DNA interactions Nat. Protoc. 2 2007 3166 3172
-
(2007)
Nat. Protoc.
, vol.2
, pp. 3166-3172
-
-
Garbett, N.C.1
Ragazzon, P.A.2
Chaires, J.B.3
-
48
-
-
0029835499
-
Structural specificity effects of trivalent polyamine analogues on the stabilization and conformational plasticity of triplex DNA
-
T.J. Thomas, G.D. Kulkarni, N.J. Greenfield, A. Shirahata, and T. Thomas Structural specificity effects of trivalent polyamine analogues on the stabilization and conformational plasticity of triplex DNA Biochem. J. 319 1996 591 599 (Pubitemid 26372221)
-
(1996)
Biochemical Journal
, vol.319
, Issue.2
, pp. 591-599
-
-
Thomas, T.J.1
Kulkarni, G.D.2
Greenfield, N.J.3
Shirahata, A.4
Thomas, T.5
-
49
-
-
0036714816
-
Polyamine structural effects on the induction and stabilization of liquid crystalline DNA: Potential applications to DNA packaging, gene therapy and polyamine therapeutics
-
M. Saminathan, T. Thomas, A. Shirahata, C.K.S. Pillai, and T.J. Thomas Polyamine structural effects on the induction and stabilization of liquid crystalline DNA: potential applications to DNA packaging, gene therapy and polyamine therapeutics Nucleic Acids Res. 30 2002 3722 3731 (Pubitemid 35012444)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.17
, pp. 3722-3731
-
-
Saminathan, M.1
Thomas, T.2
Shirahata, A.3
Pillai, C.K.S.4
Thomas, T.J.5
-
50
-
-
0035099627
-
Polyamines in cell growth and cell death: Molecular mechanisms and therapeutic applications
-
T. Thomas, and T.J. Thomas Polyamines in cell growth and cell death: molecular mechanisms and therapeutic applications Cell. Mol. Life Sci. 58 2001 244 258 (Pubitemid 32217356)
-
(2001)
Cellular and Molecular Life Sciences
, vol.58
, Issue.2
, pp. 244-258
-
-
Thomas, T.1
Thomas, T.J.2
-
51
-
-
84855389998
-
A study of the hydration of alkali metal ions in aqueous solution
-
J. Mahler, and I. Persson A study of the hydration of alkali metal ions in aqueous solution Inorg. Chem. 51 2012 425 438
-
(2012)
Inorg. Chem.
, vol.51
, pp. 425-438
-
-
Mahler, J.1
Persson, I.2
-
52
-
-
77957280516
-
Hydrated metal ions in aqueous solution: How regular are their structures?
-
I. Persson Hydrated metal ions in aqueous solution: how regular are their structures? Pure Appl. Chem. 82 2010 1901 1917
-
(2010)
Pure Appl. Chem.
, vol.82
, pp. 1901-1917
-
-
Persson, I.1
-
54
-
-
0001396027
-
Rotation, solvation, and hydrogen bonding of aqueous ammonium ion
-
C.P. Perrin, and R.K. Gipe Rotation, solvation, and hydrogen bonding of aqueous ammonium ion J. Am. Chem. Soc. 108 1986 1088 1089
-
(1986)
J. Am. Chem. Soc.
, vol.108
, pp. 1088-1089
-
-
Perrin, C.P.1
Gipe, R.K.2
-
55
-
-
45849137851
-
Attractive forces between cation condensed DNA double helices
-
B.A. Todd, V.A. Parsegian, A. Shirahata, T.J. Thomas, and D.C. Rau Attractive forces between cation condensed DNA double helices Biophys. J. 94 2008 4775 4782
-
(2008)
Biophys. J.
, vol.94
, pp. 4775-4782
-
-
Todd, B.A.1
Parsegian, V.A.2
Shirahata, A.3
Thomas, T.J.4
Rau, D.C.5
-
56
-
-
0017703634
-
Melting point depression of DNA by tetraalkylammonium bromides
-
DOI 10.1016/0009-2797(77)90031-X
-
J.M. Collins, and K.S. Rogers Melting point depression of DNA by tetralkylammonium bromides Chem. Biol. Interact. 19 1977 197 203 (Pubitemid 8241508)
-
(1977)
Chemico-Biological Interactions
, vol.19
, Issue.2
, pp. 197-203
-
-
Collins, J.M.1
Rogers, K.S.2
-
57
-
-
0035964383
-
Locating monovalent cations in the grooves of B-DNA
-
DOI 10.1021/bi010391+
-
S.B. Howerton, C.C. Sines, D. VanDerveer, and L.D. Williams Locating monovalent cations in the grooves of B-DNA Biochemistry 40 2001 10023 10031 (Pubitemid 32800109)
-
(2001)
Biochemistry
, vol.40
, Issue.34
, pp. 10023-10031
-
-
Howerton, S.B.1
Sines, C.C.2
VanDerveer, D.3
Williams, L.D.4
-
59
-
-
0026437888
-
Stabilities of double- and triple-strand helical nucleic acids
-
Y.K. Chen, and B.M. Pettitt Stabilities of double- and triple-strand helical nucleic acids Prog. Biophys. Mol. Biol. 58 1992 225 257
-
(1992)
Prog. Biophys. Mol. Biol.
, vol.58
, pp. 225-257
-
-
Chen, Y.K.1
Pettitt, B.M.2
-
60
-
-
79953907770
-
Monovalent cation size and DNA conformational stability
-
E. Stellwagen, J.M. Muse, and N.C. Stellwagen Monovalent cation size and DNA conformational stability Biochemistry 50 2011 3084 3094
-
(2011)
Biochemistry
, vol.50
, pp. 3084-3094
-
-
Stellwagen, E.1
Muse, J.M.2
Stellwagen, N.C.3
-
61
-
-
36848999901
-
Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids
-
DOI 10.1021/ja075020g
-
Y. Bai, M. Greenfeld, K.J. Travers, V.B. Chu, J. Lipfert, S. Doniach, and D. Herschlag Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids J. Am. Chem. Soc. 129 2007 14981 14988 (Pubitemid 350230720)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.48
, pp. 14981-14988
-
-
Bai, Y.1
Greenfeld, M.2
Travers, K.J.3
Chu, V.B.4
Lipfert, J.5
Doniach, S.6
Herschlag, D.7
-
62
-
-
0027267925
-
7 of guanines in Z-DNA and a drug - DNA complex
-
Y.G. Gao, M. Sriram, and A.H. Wang Crystallographic studies of metal ion-DNA interactions: different binding modes of cobalt(II), copper(II) and barium(II) to N7 of guanines in Z-DNA and a drug-DNA complex Nucleic Acids Res. 21 1993 4093 4101 (Pubitemid 23258727)
-
(1993)
Nucleic Acids Research
, vol.21
, Issue.17
, pp. 4093-4101
-
-
Gao, Y.-G.1
Sriram, M.2
Wang, A.H.-J.3
-
63
-
-
0034249870
-
The effect of metal binding to the N7 site of purine nucleotides on their structure, energy, and involvement in base pairing
-
J. Sponer, M. Sabat, L. Gorb, J. Leszczynski, B. Lippert, and P. Hobza The effect of metal binding to the N7 site of purine nucleotides on their structure, energy, and involvement in base pairing J. Phys. Chem. B 104 2000 7535 7544
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 7535-7544
-
-
Sponer, J.1
Sabat, M.2
Gorb, L.3
Leszczynski, J.4
Lippert, B.5
Hobza, P.6
-
64
-
-
0028030641
-
Conformational transitions of duplex and triplex nucleic acid helices: Thermodynamic analysis of effects of salt concentration on stability using preferential interaction coefficients
-
J.P. Bond, C.F. Anderson, and M.T. Record Jr. Conformational transitions of duplex and triplex nucleic acid helices: Thermodynamic analysis of effects of salt concentration on stability using preferential interaction coefficients Biophys. J. 67 1994 825 836 (Pubitemid 24235411)
-
(1994)
Biophysical Journal
, vol.67
, Issue.2
, pp. 825-836
-
-
Bond, J.P.1
Anderson, C.F.2
Record Jr., M.T.3
-
65
-
-
2342641429
-
Site-resolved stabilization of a DNA triple helix by magnesium ions
-
DOI 10.1093/nar/gkh228
-
D. Coman, and I.M. Russu Site-resolved stabilization of a DNA triple helix by magnesium ions Nucleic Acids Res. 32 2004 878 883 (Pubitemid 38854690)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.3
, pp. 878-883
-
-
Coman, D.1
Russu, I.M.2
-
66
-
-
0033592955
-
Structure of a triple helical DNA with a triplex-duplex junction
-
S. Rhee, Z. Han, K. Liu, H.T. Miles, and D.R. Davies Structure of a triple helical DNA with a triplex-duplex junction Biochemistry 38 1999 16810 16815
-
(1999)
Biochemistry
, vol.38
, pp. 16810-16815
-
-
Rhee, S.1
Han, Z.2
Liu, K.3
Miles, H.T.4
Davies, D.R.5
-
67
-
-
48149103751
-
Influence of magnesium ions on spontaneous opening of DNA base pairs
-
A.E. Every, and I.M. Russu Influence of magnesium ions on spontaneous opening of DNA base pairs J. Phys. Chem. B 112 2008 7689 7695
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 7689-7695
-
-
Every, A.E.1
Russu, I.M.2
-
68
-
-
34250346492
-
NMR evaluation of ammonium ion movement within a unimolecular G-quadruplex in solution
-
DOI 10.1093/nar/gkm138
-
P. Podbevsek, N.V. Hud, and J. Plavec NMR evaluation of ammonium ion movement within a unimolecular G-quadruplex in solution Nucleic Acids Res. 35 2007 2554 2563 (Pubitemid 47073669)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.8
, pp. 2554-2563
-
-
Podbevsek, P.1
Hud, N.V.2
Plavec, J.3
-
69
-
-
49349108775
-
Remarkable metal counterion effect on the internucleotide J-couplings and chemical shifts of the N-H⋯N hydrogen bonds in the W-C base pairs
-
H. Li, R.I. Cukier, and Y. Bu Remarkable metal counterion effect on the internucleotide J-couplings and chemical shifts of the N-H⋯N hydrogen bonds in the W-C base pairs J. Phys. Chem. B 112 2008 9174 9181
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 9174-9181
-
-
Li, H.1
Cukier, R.I.2
Bu, Y.3
-
70
-
-
0025895932
-
Structure, stability, and thermodynamics of a short intermolecular purine-purine-pyrimidine triple helix
-
D.S. Pilch, C. Levenson, and R.H. Shafer Structure, stability, and thermodynamics of a short intermolecular purine-purine-pyrimidine triple helix Biochemistry 30 1991 6081 6088
-
(1991)
Biochemistry
, vol.30
, pp. 6081-6088
-
-
Pilch, D.S.1
Levenson, C.2
Shafer, R.H.3
-
71
-
-
0035958664
-
Counterion association with native and denatured nucleic acids: An experimental approach
-
DOI 10.1006/jmbi.2001.4841
-
J. Völker, H.H. Klump, G.S. Manning, and K.J. Breslauer Counterion association with native and denatured nucleic acids: An experimental approach J. Mol. Biol. 310 2001 1011 1025 (Pubitemid 32738374)
-
(2001)
Journal of Molecular Biology
, vol.310
, Issue.5
, pp. 1011-1025
-
-
Volker, J.1
Klump, H.H.2
Manning, G.S.3
Breslauer, K.J.4
-
72
-
-
39149124468
-
Interplay of ion binding and attraction in DNA condensed by multivalent cations
-
DOI 10.1093/nar/gkm1038
-
B.A. Todd, and D.C. Rau Interplay of ion binding and attraction in DNA condensed by multivalent cations Nucleic Acids Res. 36 2008 501 510 (Pubitemid 351250441)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.2
, pp. 501-510
-
-
Todd, B.A.1
Rau, D.C.2
-
73
-
-
56749093208
-
Triplex formation on DNA targets: How to choose the oligonucleotide
-
P. Vekhoff, A. Ceccaldi, D. Polverari, J. Pylouster, C. Pisano, and P.B. Arimondo Triplex formation on DNA targets: how to choose the oligonucleotide Biochemistry 47 2008 12277 12289
-
(2008)
Biochemistry
, vol.47
, pp. 12277-12289
-
-
Vekhoff, P.1
Ceccaldi, A.2
Polverari, D.3
Pylouster, J.4
Pisano, C.5
Arimondo, P.B.6
-
74
-
-
1842531403
-
Sequence and pH Effects of LNA-Containing Triple Helix-Forming Oligonucleotides: Physical Chemistry, Biochemistry, and Modeling Studies
-
DOI 10.1021/bi036064e
-
B.W. Sun, B.R. Babu, M.D. Sørensen, K. Zakrzewska, J. Wengel, and J.S. Sun Sequence and pH effects of LNA-containing triple helix-forming oligonucleotides: physical chemistry, biochemistry, and modeling studies Biochemistry 43 2004 4160 4169 (Pubitemid 38445636)
-
(2004)
Biochemistry
, vol.43
, Issue.14
, pp. 4160-4169
-
-
Sun, B.-W.1
Babu, B.R.2
Sorensen, M.D.3
Zakrzewska, K.4
Wengel, J.5
Sun, J.-S.6
-
75
-
-
67849097706
-
Silver ion unusually stabilizes the structure of a parallel-motif DNA triplex
-
T. Ihara, T. Ishii, N. Araki, A.W. Wilson, and A. Jyo Silver ion unusually stabilizes the structure of a parallel-motif DNA triplex J. Am. Chem. Soc. 131 2009 3826 3827
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 3826-3827
-
-
Ihara, T.1
Ishii, T.2
Araki, N.3
Wilson, A.W.4
Jyo, A.5
-
76
-
-
0017895903
-
The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides
-
G.S. Manning The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides Q. Rev. Biophys. 11 1978 179 246 (Pubitemid 8373665)
-
(1978)
Quarterly Reviews of Biophysics
, vol.11
, Issue.2
, pp. 179-246
-
-
Manning, G.S.1
-
77
-
-
0017820499
-
Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: The roles of ion association or release, screening, and ion effects on water activity
-
M.T. Record Jr., C.F. Anderson, and T.M. Lohman Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: The roles of ion association or release, screening, and ion effects on water activity Q. Rev. Biophys. 11 1978 103 178 (Pubitemid 8373664)
-
(1978)
Quarterly Reviews of Biophysics
, vol.11
, Issue.2
, pp. 103-178
-
-
Record Jr., M.T.1
Anderson, C.F.2
Lohman, T.M.3
-
78
-
-
0020740676
-
Collapse of DNA caused by trivalent cations: PH and ionic specificity effects
-
T.J. Thomas, and V.A. Bloomfield Collapse of DNA caused by trivalent cations: pH and ionic specificity effects Biopolymers 22 1983 1097 1106
-
(1983)
Biopolymers
, vol.22
, pp. 1097-1106
-
-
Thomas, T.J.1
Bloomfield, V.A.2
-
79
-
-
78650751760
-
Divalent counterion-induced condensation of triple-tranded DNA
-
X. Qiu, V.A. Parsegian, and D.C. Rau Divalent counterion-induced condensation of triple-tranded DNA Proc. Natl. Acad. Sci. U. S. A. 107 2010 21482 21486
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 21482-21486
-
-
Qiu, X.1
Parsegian, V.A.2
Rau, D.C.3
|