-
1
-
-
0007685274
-
-
Oxford University Press Inc, New York
-
Neidle,S. (1999) Nucleic Acid Structure. Oxford University Press Inc., New York.
-
(1999)
Nucleic Acid Structure
-
-
Neidle, S.1
-
2
-
-
38449106276
-
Discovery of alternative DNA structures: A heroic decade (1979-1989)
-
Mirkin,S.M. (2008) Discovery of alternative DNA structures: A heroic decade (1979-1989). Front. Biosci., 13, 1064-1071.
-
(2008)
Front. Biosci
, vol.13
, pp. 1064-1071
-
-
Mirkin, S.M.1
-
3
-
-
34249907843
-
Non-B DNA conformations, mutagenesis and disease
-
Wells,R.D. (2007) Non-B DNA conformations, mutagenesis and disease. Trends Biochem. Sci., 32, 271-278.
-
(2007)
Trends Biochem. Sci
, vol.32
, pp. 271-278
-
-
Wells, R.D.1
-
5
-
-
0028959773
-
Circular dichroism
-
Woody,R.W. (1995) Circular dichroism. Methods Enzymol., 246, 34-71.
-
(1995)
Methods Enzymol
, vol.246
, pp. 34-71
-
-
Woody, R.W.1
-
6
-
-
0016251069
-
Circular dichroism of DNA in the vacuum ultraviolet
-
Lewis,D.G. and Johnson,W.C. (1974) Circular dichroism of DNA in the vacuum ultraviolet. J. Mol. Biol., 86, 91-96.
-
(1974)
J. Mol. Biol
, vol.86
, pp. 91-96
-
-
Lewis, D.G.1
Johnson, W.C.2
-
7
-
-
0000501069
-
Structural studies of biological macromolecules using vibrational circular dichroism
-
Clark,R.J.H. and Hester,R.E, eds, John Wiley & Sons, New York, pp
-
Keiderling,T.A. and Pančoška,P. (1993) Structural studies of biological macromolecules using vibrational circular dichroism. In Clark,R.J.H. and Hester,R.E. (eds), Biomolecular Spectroscopy, Vol. 21. John Wiley & Sons, New York, pp. 267-315.
-
(1993)
Biomolecular Spectroscopy
, vol.21
, pp. 267-315
-
-
Keiderling, T.A.1
Pančoška, P.2
-
9
-
-
0022764050
-
Graphical analysis of circular dichroic spectra distinguishes between two-state and gradual alterations in DNA conformation
-
Kypr,J. and Vorlickova,M. (1986) Graphical analysis of circular dichroic spectra distinguishes between two-state and gradual alterations in DNA conformation. Gen. Physiol. Biophys., 5, 415-422.
-
(1986)
Gen. Physiol. Biophys
, vol.5
, pp. 415-422
-
-
Kypr, J.1
Vorlickova, M.2
-
10
-
-
0014966271
-
Circular dichroism of DNA films: Reversibility studies
-
Maestre,M.F. (1970) Circular dichroism of DNA films: Reversibility studies. J. Mol. Biol., 52, 543-556.
-
(1970)
J. Mol. Biol
, vol.52
, pp. 543-556
-
-
Maestre, M.F.1
-
11
-
-
0026767395
-
Circular dichroism spectroscopy of DNA
-
Gray,D.M., Ratliff,R.L. and Vaughan,M.R. (1992) Circular dichroism spectroscopy of DNA. Methods Enzymol., 211, 389-406.
-
(1992)
Methods Enzymol
, vol.211
, pp. 389-406
-
-
Gray, D.M.1
Ratliff, R.L.2
Vaughan, M.R.3
-
12
-
-
39749116244
-
Measured and calculated CD spectra of G-quartets stacked with the same or opposite polarities
-
Gray,D.M., Wen,J.D., Gray,C.W., Repges,R., Repges,C., Raabe,G. and Fleischhauer,J. (2008) Measured and calculated CD spectra of G-quartets stacked with the same or opposite polarities. Chirality, 20, 431-440.
-
(2008)
Chirality
, vol.20
, pp. 431-440
-
-
Gray, D.M.1
Wen, J.D.2
Gray, C.W.3
Repges, R.4
Repges, C.5
Raabe, G.6
Fleischhauer, J.7
-
13
-
-
0015541536
-
Different conformations of double-stranded nucleic acid in solution as revealed by circular dichroism
-
Ivanov,V.I., Minchenkova,L.E., Schyolkina,A.K. and Poletayev,A.I. (1973) Different conformations of double-stranded nucleic acid in solution as revealed by circular dichroism. Biopolymers, 12, 89-110.
-
(1973)
Biopolymers
, vol.12
, pp. 89-110
-
-
Ivanov, V.I.1
Minchenkova, L.E.2
Schyolkina, A.K.3
Poletayev, A.I.4
-
14
-
-
0014955374
-
Physical and enzymatic studies on poly d(I-C)-poly d(I-C), an unusual double-helical DNA
-
Mitsui,Y., Langridge,R., Shortle,B.E., Cantor,C.R., Grant,R.C., Kodama,M. and Wells,R.D. (1970) Physical and enzymatic studies on poly d(I-C)-poly d(I-C), an unusual double-helical DNA. Nature, 228 1166-1169.
-
(1970)
Nature
, vol.228
, pp. 1166-1169
-
-
Mitsui, Y.1
Langridge, R.2
Shortle, B.E.3
Cantor, C.R.4
Grant, R.C.5
Kodama, M.6
Wells, R.D.7
-
15
-
-
0025735571
-
5dC) among and within the B-, Z-, A- and X-DNA families of conformations
-
5dC) among and within the B-, Z-, A- and X-DNA families of conformations. Nucleic Acids Res., 19 2343-2347.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 2343-2347
-
-
Vorlickova, M.1
Sagi, J.2
-
16
-
-
0023513912
-
The structure of an oligo(dA)boligo(dT) tract and its biological implications
-
Nelson,H.C.M., Finch,J.T., Luisi,B.F. and Klug,A. (1987) The structure of an oligo(dA)boligo(dT) tract and its biological implications. Nature, 330, 221-226.
-
(1987)
Nature
, vol.330
, pp. 221-226
-
-
Nelson, H.C.M.1
Finch, J.T.2
Luisi, B.F.3
Klug, A.4
-
17
-
-
0023164663
-
Poly(dA).poly(dT) is a B-type double helix with a distinctively narrow minor groove
-
Alexeev,D.G., Lipanov,A.A. and Skuratovskii,I.Y. (1987) Poly(dA).poly(dT) is a B-type double helix with a distinctively narrow minor groove. Nature, 325, 821-823.
-
(1987)
Nature
, vol.325
, pp. 821-823
-
-
Alexeev, D.G.1
Lipanov, A.A.2
Skuratovskii, I.Y.3
-
18
-
-
0034615785
-
An A-type double helix of DNA having B-type puckering of the deoxyribose rings
-
Trantirek,L., Stefl,R., Vorlickova,M., Koca,J., Sklenar,V. and Kypr,J. (2000) An A-type double helix of DNA having B-type puckering of the deoxyribose rings. J. Mol. Biol., 297, 907-922.
-
(2000)
J. Mol. Biol
, vol.297
, pp. 907-922
-
-
Trantirek, L.1
Stefl, R.2
Vorlickova, M.3
Koca, J.4
Sklenar, V.5
Kypr, J.6
-
19
-
-
0015255034
-
Circular dichroism of DNA: Temperature and salt dependence
-
Studdert,D.S., Patroni,M. and Davis,R.C. (1972) Circular dichroism of DNA: Temperature and salt dependence. Biopolymers, 11, 761-779.
-
(1972)
Biopolymers
, vol.11
, pp. 761-779
-
-
Studdert, D.S.1
Patroni, M.2
Davis, R.C.3
-
20
-
-
0023406843
-
Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves
-
Marky,L.A. and Breslauer,K.J. (1987) Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves. Biopolymers, 26, 1601-1620.
-
(1987)
Biopolymers
, vol.26
, pp. 1601-1620
-
-
Marky, L.A.1
Breslauer, K.J.2
-
21
-
-
1542303744
-
Analysis of thermal melting curves
-
Mergny,J.L. and Lacroix,L. (2003) Analysis of thermal melting curves. Oligonucleotides, 13, 515-537.
-
(2003)
Oligonucleotides
, vol.13
, pp. 515-537
-
-
Mergny, J.L.1
Lacroix, L.2
-
22
-
-
55249109574
-
Stability and kinetics of G-quadruplex structures
-
Lane,A.N., Chaires,J.B., Gray,R.D. and Trent,J.O. (2008) Stability and kinetics of G-quadruplex structures. Nucleic Acids Res., 36, 5482-5515.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5482-5515
-
-
Lane, A.N.1
Chaires, J.B.2
Gray, R.D.3
Trent, J.O.4
-
23
-
-
0037109206
-
Slipped-strand DNAs formed by long (CAG).(CTG) repeats: Slipped-out repeats and slip-out junctions
-
Pearson,C.E., Tam,M., Wang,Y.H., Montgomery,S.E., Dar,A.C., Cleary,J.D. and Nichol,K. (2002) Slipped-strand DNAs formed by long (CAG).(CTG) repeats: Slipped-out repeats and slip-out junctions. Nucleic Acids Res., 30, 4534-4547.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4534-4547
-
-
Pearson, C.E.1
Tam, M.2
Wang, Y.H.3
Montgomery, S.E.4
Dar, A.C.5
Cleary, J.D.6
Nichol, K.7
-
24
-
-
25844438495
-
Repeat instability: Mechanisms of dynamic mutations
-
Pearson,C.E., Edamura,K.N. and Cleary,J.D. (2005) Repeat instability: mechanisms of dynamic mutations. Nat. Rev. Genet., 6, 729-742.
-
(2005)
Nat. Rev. Genet
, vol.6
, pp. 729-742
-
-
Pearson, C.E.1
Edamura, K.N.2
Cleary, J.D.3
-
25
-
-
0016266033
-
The B to A transition of DNA in solution
-
Ivanov,V.I., Minchenkova,L.E., Minyat,E.E., Frank-Kamenetskii,M.D. and Schyolkina,A.K. (1974) The B to A transition of DNA in solution. J. Mol. Biol., 87, 817-833.
-
(1974)
J. Mol. Biol
, vol.87
, pp. 817-833
-
-
Ivanov, V.I.1
Minchenkova, L.E.2
Minyat, E.E.3
Frank-Kamenetskii, M.D.4
Schyolkina, A.K.5
-
26
-
-
0035937262
-
A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC)
-
Stefl,R., Trantirek,L., Vorlickova,M., Koca,J., Sklenar,V. and Kypr,J. (2001) A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC). J. Mol. Biol., 307, 513-524.
-
(2001)
J. Mol. Biol
, vol.307
, pp. 513-524
-
-
Stefl, R.1
Trantirek, L.2
Vorlickova, M.3
Koca, J.4
Sklenar, V.5
Kypr, J.6
-
27
-
-
0020480683
-
Conformational transitions of poly(dA-dT)bpoly(dA-dT) in ethanolic solutions
-
Vorlickova,M., Sedlacek,P., Kypr,J. and Sponar,J. (1982) Conformational transitions of poly(dA-dT)bpoly(dA-dT) in ethanolic solutions. Nucleic Acids Res., 10, 6969-6979.
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 6969-6979
-
-
Vorlickova, M.1
Sedlacek, P.2
Kypr, J.3
Sponar, J.4
-
28
-
-
0021966969
-
Three-state diagram for DNA
-
Ivanov,V.I., Krylov,D.Y. and Minyat,E.E. (1985) Three-state diagram for DNA. J. Biomol. Struct. Dyn., 3, 43-55.
-
(1985)
J. Biomol. Struct. Dyn
, vol.3
, pp. 43-55
-
-
Ivanov, V.I.1
Krylov, D.Y.2
Minyat, E.E.3
-
29
-
-
0029774108
-
Comparison of the solution and crystal conformations of (G+C)-rich fragments of DNA
-
Vorlickova,M., Subirana,J.A., Chladkova,J., Tejralova,I., HuynhDinh,T., Arnold,L. and Kypr,J. (1996) Comparison of the solution and crystal conformations of (G+C)-rich fragments of DNA. Biophysical J., 71, 1530-1538.
-
(1996)
Biophysical J
, vol.71
, pp. 1530-1538
-
-
Vorlickova, M.1
Subirana, J.A.2
Chladkova, J.3
Tejralova, I.4
HuynhDinh, T.5
Arnold, L.6
Kypr, J.7
-
30
-
-
0345035490
-
Aqueous trifluorethanol solutions simulate the environment of DNA in the crystalline state
-
Kypr,J., Chladkova,J., Zimulova,M. and Vorlickova,M. (1999) Aqueous trifluorethanol solutions simulate the environment of DNA in the crystalline state. Nucleic Acids Res., 27, 3466-3473.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 3466-3473
-
-
Kypr, J.1
Chladkova, J.2
Zimulova, M.3
Vorlickova, M.4
-
31
-
-
0021315023
-
Cooperative changes in the chiroptical properties of DNA induced by methanol
-
Vorlickova,M., Minyat,E.E. and Kypr,J. (1984) Cooperative changes in the chiroptical properties of DNA induced by methanol. Biopolymers, 23, 1-4.
-
(1984)
Biopolymers
, vol.23
, pp. 1-4
-
-
Vorlickova, M.1
Minyat, E.E.2
Kypr, J.3
-
32
-
-
0004108577
-
-
3rd edn. Pearson/Prentice Hall, Upper Saddle River, NJ
-
van Holde,K.E., Johnson,W.C. and Ho,P.S. (1998) Principles of Physical Biochemistry, 3rd edn. Pearson/Prentice Hall, Upper Saddle River, NJ.
-
(1998)
Principles of Physical Biochemistry
-
-
van Holde, K.E.1
Johnson, W.C.2
Ho, P.S.3
-
33
-
-
0015527119
-
Salt-induced cooperative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC)
-
Pohl,F.M. and Jovin,T.M. (1972) Salt-induced cooperative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC). J. Mol. Biol., 67, 375-396.
-
(1972)
J. Mol. Biol
, vol.67
, pp. 375-396
-
-
Pohl, F.M.1
Jovin, T.M.2
-
34
-
-
0019888417
-
The transitions between left-and right-handed forms of poly(dG-dC)
-
Ivanov,V.I. and Minyat,E.E. (1981) The transitions between left-and right-handed forms of poly(dG-dC). Nucleic Acids Res., 9, 4783-4798.
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 4783-4798
-
-
Ivanov, V.I.1
Minyat, E.E.2
-
35
-
-
0021530356
-
Temperature-dependent reversible transition of poly(dCdG).poly(dCdG) in ethanolic and methanolic solutions
-
Hall,K.B. and Maestre,M.F. (1984) Temperature-dependent reversible transition of poly(dCdG).poly(dCdG) in ethanolic and methanolic solutions. Biopolymers, 23, 2127-2139.
-
(1984)
Biopolymers
, vol.23
, pp. 2127-2139
-
-
Hall, K.B.1
Maestre, M.F.2
-
36
-
-
0025300875
-
Stabilization of the Z' form of poly(dGdC):pOly(dGdC) in solution by multivalent ions relates to the ZII form in crystals
-
Harder,M.E. and Johnson,W.C. (1990) Stabilization of the Z' form of poly(dGdC):pOly(dGdC) in solution by multivalent ions relates to the ZII form in crystals. Nucleic Acids Res., 18, 2141-2148.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 2141-2148
-
-
Harder, M.E.1
Johnson, W.C.2
-
37
-
-
0028945546
-
Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes
-
Gray,D.M., Hung,S.H. and Johnson,K.H. (1995) Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes. Methods Enzymol., 246, 19-34.
-
(1995)
Methods Enzymol
, vol.246
, pp. 19-34
-
-
Gray, D.M.1
Hung, S.H.2
Johnson, K.H.3
-
38
-
-
0025369611
-
Spectroscopic and calorimetric investigation on the DNA triplex formed by d(CTCTTCTTTCTTTTCTTTCTTCTC) and d(GAGAAGAAAGA) at acidic pH
-
Xodo,L.E., Manzini,G. and Quadrifoglio,F. (1990) Spectroscopic and calorimetric investigation on the DNA triplex formed by d(CTCTTCTTTCTTTTCTTTCTTCTC) and d(GAGAAGAAAGA) at acidic pH. Nucleic Acids Res., 18, 3557-3564.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 3557-3564
-
-
Xodo, L.E.1
Manzini, G.2
Quadrifoglio, F.3
-
39
-
-
0034666413
-
2+ ions
-
2+ ions. Nucleic Acids Res., 28, 3511-3516.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3511-3516
-
-
Khomyakova, E.B.1
Gousset, H.2
Liquier, J.3
Huynh-Dinh, T.4
Gouyette, C.5
Takahashi, M.6
Florentiev, V.L.7
Taillandier, E.8
-
40
-
-
47649089968
-
Targeting DNA with triplex-forming oligonucleotides to modify gene sequence
-
Simon,P., Cannata,F., Concordet,J.P. and Giovannangeli,C. (2008) Targeting DNA with triplex-forming oligonucleotides to modify gene sequence. Biochimie, 90, 1109-1116.
-
(2008)
Biochimie
, vol.90
, pp. 1109-1116
-
-
Simon, P.1
Cannata, F.2
Concordet, J.P.3
Giovannangeli, C.4
-
41
-
-
47649084520
-
DNA triple helices: Biological consequences and therapeutic potential
-
Jain,A., Wang,G. and Vasquez,K.M. (2008) DNA triple helices: Biological consequences and therapeutic potential. Biochimie, 90, 1117-1130.
-
(2008)
Biochimie
, vol.90
, pp. 1117-1130
-
-
Jain, A.1
Wang, G.2
Vasquez, K.M.3
-
42
-
-
0026761859
-
Hairpin and parallel quartet structures for telomeric sequences
-
Balagurumoorthy,P., Brahmachari,S.K., Mohanty,D., Bansal,M. and Sasisekharan,V. (1992) Hairpin and parallel quartet structures for telomeric sequences. Nucleic Acids Res., 20, 4061-4067.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 4061-4067
-
-
Balagurumoorthy, P.1
Brahmachari, S.K.2
Mohanty, D.3
Bansal, M.4
Sasisekharan, V.5
-
43
-
-
0038476179
-
Biophysical and biological properties of quadruplex oligodeoxyribonucleotides
-
Dapic,V., Abdomerovic,V., Marrington,R., Peberdy,J., Rodger,A., Trent,J.O. and Bates,P.J. (2003) Biophysical and biological properties of quadruplex oligodeoxyribonucleotides. Nucleic Acids Res., 31 2097-2107.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2097-2107
-
-
Dapic, V.1
Abdomerovic, V.2
Marrington, R.3
Peberdy, J.4
Rodger, A.5
Trent, J.O.6
Bates, P.J.7
-
44
-
-
26944463127
-
Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats
-
Vorlickova,M., Chladkova,J., Kejnovska,I., Fialova,M. and Kypr,J. (2005) Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats. Nucleic Acids Res., 33, 5851-5860.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5851-5860
-
-
Vorlickova, M.1
Chladkova, J.2
Kejnovska, I.3
Fialova, M.4
Kypr, J.5
-
45
-
-
35448983988
-
Circular dichroism of quadruplex DNAs: Applications to structure, cation effects and ligand binding
-
Paramasivan,S., Rujan,I. and Bolton,P.H. (2007) Circular dichroism of quadruplex DNAs: Applications to structure, cation effects and ligand binding. Methods, 43, 324-331.
-
(2007)
Methods
, vol.43
, pp. 324-331
-
-
Paramasivan, S.1
Rujan, I.2
Bolton, P.H.3
-
46
-
-
33646074671
-
Ethanol is a better inducer of DNA guanine tetraplexes than potassium cations
-
Vorlickova,M., Bednarova,K. and Kypr,J. (2006) Ethanol is a better inducer of DNA guanine tetraplexes than potassium cations. Biopolymers, 82, 253-260.
-
(2006)
Biopolymers
, vol.82
, pp. 253-260
-
-
Vorlickova, M.1
Bednarova, K.2
Kypr, J.3
-
47
-
-
34248160921
-
Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions
-
Vorlickova,M., Bednarova,K., Kejnovska,I. and Kypr,J. (2007) Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions. Biopolymers, 86, 1-10.
-
(2007)
Biopolymers
, vol.86
, pp. 1-10
-
-
Vorlickova, M.1
Bednarova, K.2
Kejnovska, I.3
Kypr, J.4
-
48
-
-
0035216036
-
Conserved guanine-guanine stacking in tetraplex and duplex DNA
-
Kypr,J., Fialova,M., Chladkova,J., Tumova,M. and Vorlickova,M. (2001) Conserved guanine-guanine stacking in tetraplex and duplex DNA. Eur. Biophys. J., 30, 555-558.
-
(2001)
Eur. Biophys. J
, vol.30
, pp. 555-558
-
-
Kypr, J.1
Fialova, M.2
Chladkova, J.3
Tumova, M.4
Vorlickova, M.5
-
49
-
-
0036299062
-
Circular dichroism spectroscopy reveals invariant conformation of guanine runs in DNA
-
Kypr,J. and Vorlickova,M. (2002) Circular dichroism spectroscopy reveals invariant conformation of guanine runs in DNA. Biopolymers, 67 275-277.
-
(2002)
Biopolymers
, vol.67
, pp. 275-277
-
-
Kypr, J.1
Vorlickova, M.2
-
50
-
-
0029082563
-
Intramolecular folding of pyrimidine oligodeoxynucleotides into a I-DNA motif
-
Mergny,J.L., Lacroix,L., Han,X.G., Leroy,J.L. and Helene,C. (1995) Intramolecular folding of pyrimidine oligodeoxynucleotides into a I-DNA motif. J. Am. Chem. Soc., 117, 8887-8898.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 8887-8898
-
-
Mergny, J.L.1
Lacroix, L.2
Han, X.G.3
Leroy, J.L.4
Helene, C.5
-
52
-
-
0028028058
-
Evidence for intramolecularly folded i-DNA structures in biologically relevant CCC-repeat sequences
-
Manzini,G., Yathindra,N. and Xodo,L.E. (1994) Evidence for intramolecularly folded i-DNA structures in biologically relevant CCC-repeat sequences. Nucleic Acids Res., 22, 4634-4640.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4634-4640
-
-
Manzini, G.1
Yathindra, N.2
Xodo, L.E.3
-
53
-
-
0034638609
-
A nuclease hypersensitive element in the human c-myc promoter adopts several distinct i-tetraplex structures
-
Simonsson,T., Pribylova,M. and Vorlickova,M. (2000) A nuclease hypersensitive element in the human c-myc promoter adopts several distinct i-tetraplex structures. Biochem. Biophys. Res. Commun., 278, 158-166.
-
(2000)
Biochem. Biophys. Res. Commun
, vol.278
, pp. 158-166
-
-
Simonsson, T.1
Pribylova, M.2
Vorlickova, M.3
-
55
-
-
0028973578
-
20 DNA sequence
-
20 DNA sequence. Biochemistry, 34, 14408-14415.
-
(1995)
Biochemistry
, vol.34
, pp. 14408-14415
-
-
Ortiz-Lombardia, M.1
Eritja, R.2
Azorin, F.3
Kypr, J.4
Tejralova, I.5
Vorlickova, M.6
-
56
-
-
0026697386
-
Alternating d(G-A) sequences form a parallel-stranded DNA homoduplex
-
Rippe,K., Fritsch,V., Westhof,E. and Jovin,T.M. (1992) Alternating d(G-A) sequences form a parallel-stranded DNA homoduplex. EMBO J., 11, 3777-3786.
-
(1992)
EMBO J
, vol.11
, pp. 3777-3786
-
-
Rippe, K.1
Fritsch, V.2
Westhof, E.3
Jovin, T.M.4
-
57
-
-
0035058425
-
Dimethylsulfoxide-stabilized conformer of guanine-adenine repeat strand of DNA
-
Kypr,J. and Vorlickova,M. (2001) Dimethylsulfoxide-stabilized conformer of guanine-adenine repeat strand of DNA. Biopolymers, 62, 81-84.
-
(2001)
Biopolymers
, vol.62
, pp. 81-84
-
-
Kypr, J.1
Vorlickova, M.2
-
58
-
-
33846512959
-
Towards a better understanding of the unusual conformations of the alternating guanine-adenine repeat strands of DNA
-
Kejnovska,I., Kypr,J., Vondruskova,J. and Vorlickova,M. (2007) Towards a better understanding of the unusual conformations of the alternating guanine-adenine repeat strands of DNA. Biopolymers, 85, 19-27.
-
(2007)
Biopolymers
, vol.85
, pp. 19-27
-
-
Kejnovska, I.1
Kypr, J.2
Vondruskova, J.3
Vorlickova, M.4
-
62
-
-
0345034579
-
Dimerization of the guanine-adenine repeat strands of DNA
-
Vorlickova,M., Kejnovska,I., Kovanda,J. and Kypr,J. (1999) Dimerization of the guanine-adenine repeat strands of DNA. Nucleic Acids Res., 27, 581-586.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 581-586
-
-
Vorlickova, M.1
Kejnovska, I.2
Kovanda, J.3
Kypr, J.4
-
63
-
-
0021095381
-
Salt-induced conformational transition of poly[d(A-T)]bpoly[d(A-T)]
-
Vorlickova,M., Kypr,J. and Sklenar,V. (1983) Salt-induced conformational transition of poly[d(A-T)]bpoly[d(A-T)]. J. Mol. Biol., 166, 85-92.
-
(1983)
J. Mol. Biol
, vol.166
, pp. 85-92
-
-
Vorlickova, M.1
Kypr, J.2
Sklenar, V.3
-
64
-
-
0022004818
-
Conformational variability of poly(dA-dT).poly(dA-dT) and some other deoxyribonucleic acids includes a novel type of double helix
-
Vorlickova,M. and Kypr,J. (1985) Conformational variability of poly(dA-dT).poly(dA-dT) and some other deoxyribonucleic acids includes a novel type of double helix. J. Biomol. Struct. Dyn., 3, 67-83.
-
(1985)
J. Biomol. Struct. Dyn
, vol.3
, pp. 67-83
-
-
Vorlickova, M.1
Kypr, J.2
-
65
-
-
0030003231
-
The unusual X-form DNA in oligodeoxynucleotides: Dependence of stability on the base sequence and length
-
Kypr,J., Chladkova,J., Arnold,L., Sagi,J., Szemzo,A. and Vorlickova,M. (1996) The unusual X-form DNA in oligodeoxynucleotides: Dependence of stability on the base sequence and length. J. Biomol. Struct. Dyn. 13, 999-1006.
-
(1996)
J. Biomol. Struct. Dyn
, vol.13
, pp. 999-1006
-
-
Kypr, J.1
Chladkova, J.2
Arnold, L.3
Sagi, J.4
Szemzo, A.5
Vorlickova, M.6
-
66
-
-
0037022570
-
Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing
-
Abrescia,N.G.A., Thompson,A., Huynh-Dinh,T. and Subirana,J.A. (2002) Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing. Proc. Natl Acad. Sci. USA, 99, 2806-2811.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 2806-2811
-
-
Abrescia, N.G.A.1
Thompson, A.2
Huynh-Dinh, T.3
Subirana, J.A.4
-
67
-
-
0023386757
-
Z form of poly d(A-T).poly d(A-T) in solution studied by CD and UV spectroscopies
-
Bourtayre,P., Liquier,J., Pizzorni,L. and Taillandier,E. (1987) Z form of poly d(A-T).poly d(A-T) in solution studied by CD and UV spectroscopies. J. Biomol. Struct. Dyn., 5, 97-104.
-
(1987)
J. Biomol. Struct. Dyn
, vol.5
, pp. 97-104
-
-
Bourtayre, P.1
Liquier, J.2
Pizzorni, L.3
Taillandier, E.4
-
68
-
-
0024290412
-
Raman spectroscopy of Z-form poly[d(A-T)].poly[d(A-T)]
-
Ridoux,J.P., Liquier,J. and Taillandier,E. (1988) Raman spectroscopy of Z-form poly[d(A-T)].poly[d(A-T)]. Biochemistry, 27, 3874-3878.
-
(1988)
Biochemistry
, vol.27
, pp. 3874-3878
-
-
Ridoux, J.P.1
Liquier, J.2
Taillandier, E.3
-
71
-
-
0024163989
-
5dC)
-
5dC). J. Biomol. Struct. Dyn., 6, 503-510.
-
(1988)
J. Biomol. Struct. Dyn
, vol.6
, pp. 503-510
-
-
Vorlickova, M.1
Sagi, J.2
Szabolcs, A.3
Szemzo, A.4
Otvos, L.5
Kypr, J.6
-
74
-
-
0023077604
-
Absorption, scattering, and imaging of biomolecular structures by polarized-light
-
Tinoco,I., Mickols,W., Maestre,M.F. and Bustamante,C. (1987) Absorption, scattering, and imaging of biomolecular structures by polarized-light. Ann. Rev. Biophys. Biophys. Chem., 16, 319-349.
-
(1987)
Ann. Rev. Biophys. Biophys. Chem
, vol.16
, pp. 319-349
-
-
Tinoco, I.1
Mickols, W.2
Maestre, M.F.3
Bustamante, C.4
-
75
-
-
84879934080
-
Structure and circular dichroism of DNA in concentrated polymer solutions
-
Jordan,C.F., Lerman,L.S. and Venable,J.H. (1972) Structure and circular dichroism of DNA in concentrated polymer solutions. Nat. New Biol. 236, 67-70.
-
(1972)
Nat. New Biol
, vol.236
, pp. 67-70
-
-
Jordan, C.F.1
Lerman, L.S.2
Venable, J.H.3
-
77
-
-
0031870448
-
Circular dichroism of DNA frayed wires
-
Protozanova,E. and MacGregor,R.B. (1998) Circular dichroism of DNA frayed wires. Biophys. J., 75, 982-989.
-
(1998)
Biophys. J
, vol.75
, pp. 982-989
-
-
Protozanova, E.1
MacGregor, R.B.2
-
79
-
-
34447560486
-
-
Neidle,S. and Balasubramanian,S, eds, Royal Society of Chemistry, London, Cambridge
-
Neidle,S. and Balasubramanian,S. (eds) (2006) Quadruplex Nucleic Acids.. Royal Society of Chemistry, London, Cambridge.
-
(2006)
Quadruplex Nucleic Acids
-
-
-
80
-
-
23844438712
-
Not so crystal clear: The structure of the human telomere G-quadruplex in solution differs from that present in a crystal
-
Li,J., Correia,J.J., Wang,L., Trent,J.O. and Chaires,J.B. (2005) Not so crystal clear: The structure of the human telomere G-quadruplex in solution differs from that present in a crystal. Nucleic Acids Res. 33, 4649-4659.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4649-4659
-
-
Li, J.1
Correia, J.J.2
Wang, L.3
Trent, J.O.4
Chaires, J.B.5
-
81
-
-
0018689799
-
Molecular structure of a left-handed double helical DNA fragment at atomic resolution
-
Wang,A.H.J., Quigley,G.J., Kolpak,F.J., Crawford,J.L., van Boom,J.H., van der Marel,G. and Rich,A. (1979) Molecular structure of a left-handed double helical DNA fragment at atomic resolution. Nature, 282 680-686.
-
(1979)
Nature
, vol.282
, pp. 680-686
-
-
Wang, A.H.J.1
Quigley, G.J.2
Kolpak, F.J.3
Crawford, J.L.4
van Boom, J.H.5
van der Marel, G.6
Rich, A.7
-
82
-
-
20144369806
-
Highly prevalent putative quadruplex sequence motifs in human DNA
-
Todd,A.K., Johnston,M. and Neidle,S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res., 33 2901-2907.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2901-2907
-
-
Todd, A.K.1
Johnston, M.2
Neidle, S.3
-
83
-
-
20144364292
-
Prevalence of quadruplexes in the human genome
-
Huppert,J.L. and Balasubramanian,S. (2005) Prevalence of quadruplexes in the human genome. Nucleic Acids Res., 33, 2908-2916.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2908-2916
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
84
-
-
0035853164
-
Telomerase inhibitors based on quadruplex ligands selected by a fluorescence assay
-
Mergny,J.L., Lacroix,L., Teulade-Fichou,M.P., Hounsou,C., Guittat,L., Hoarau,M., Arimondo,P.B., Vigneron,J.P., Lehn,J.M., Riou,J.F. et al. (2001) Telomerase inhibitors based on quadruplex ligands selected by a fluorescence assay. Proc. Natl Acad. Sci. USA, 98, 3062-3067.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 3062-3067
-
-
Mergny, J.L.1
Lacroix, L.2
Teulade-Fichou, M.P.3
Hounsou, C.4
Guittat, L.5
Hoarau, M.6
Arimondo, P.B.7
Vigneron, J.P.8
Lehn, J.M.9
Riou, J.F.10
-
85
-
-
47249089630
-
Polymorphism of human telomeric quadruplex structures
-
Dai,J., Carver,M. and Yang,D. (2008) Polymorphism of human telomeric quadruplex structures. Biochimie, 90, 1172-1183.
-
(2008)
Biochimie
, vol.90
, pp. 1172-1183
-
-
Dai, J.1
Carver, M.2
Yang, D.3
-
86
-
-
37049004147
-
Targeting telomeres and telomerase
-
De Cian,A., Lacroix,L., Douarre,C., Temime-Smaali,N., Trentesaux,C., Riou,J.F. and Mergny,J.L. (2008) Targeting telomeres and telomerase. Biochimie, 90, 131-155.
-
(2008)
Biochimie
, vol.90
, pp. 131-155
-
-
De Cian, A.1
Lacroix, L.2
Douarre, C.3
Temime-Smaali, N.4
Trentesaux, C.5
Riou, J.F.6
Mergny, J.L.7
-
87
-
-
0027990373
-
Structure and stability of human telomeric sequence
-
Balagurumoorthy,P. and Brahmachari,S.K. (1994) Structure and stability of human telomeric sequence. J. Biol. Chem., 269, 21858-21869.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 21858-21869
-
-
Balagurumoorthy, P.1
Brahmachari, S.K.2
-
88
-
-
17144371894
-
Vertebrate telomere repeat DNAs favor external loop propeller quadruplex structures in the presence of high concentrations of potassium
-
Rujan,I.N., Meleney,J.C. and Bolton,P.H. (2005) Vertebrate telomere repeat DNAs favor external loop propeller quadruplex structures in the presence of high concentrations of potassium. Nucleic Acids Res., 33, 2022-2031.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2022-2031
-
-
Rujan, I.N.1
Meleney, J.C.2
Bolton, P.H.3
-
89
-
-
33646943863
-
Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution
-
Ambrus,A., Chen,D., Dai,J., Bialis,T., Jones,R.A. and Yang,D. (2006) Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution. Nucleic Acids Res., 34, 2723-2735.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2723-2735
-
-
Ambrus, A.1
Chen, D.2
Dai, J.3
Bialis, T.4
Jones, R.A.5
Yang, D.6
-
90
-
-
34250808425
-
Possibility of an antiparallel (tetramer) quadruplex exhibited by the double repeat of the human telomere
-
Kaushik,M., Bansal,A., Saxena,S. and Kukreti,S. (2007) Possibility of an antiparallel (tetramer) quadruplex exhibited by the double repeat of the human telomere. Biochemistry, 46, 7119-7131.
-
(2007)
Biochemistry
, vol.46
, pp. 7119-7131
-
-
Kaushik, M.1
Bansal, A.2
Saxena, S.3
Kukreti, S.4
-
93
-
-
0037142071
-
Crystal structure of parallel quadruplexes from human telomeric DNA
-
Parkinson,G.N., Lee,M.P.H. and Neidle,S. (2002) Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417, 876-880.
-
(2002)
Nature
, vol.417
, pp. 876-880
-
-
Parkinson, G.N.1
Lee, M.P.H.2
Neidle, S.3
-
94
-
-
33746600695
-
Structure of the human telomere in K+ solution: An intramolecular (3+1) G-quadruplex scaffold
-
Luu,K.N., Phan,A.T., Kuryavyi,V., Lacroix,L. and Patel,D.J. (2006) Structure of the human telomere in K+ solution: An intramolecular (3+1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 9963-9970
-
-
Luu, K.N.1
Phan, A.T.2
Kuryavyi, V.3
Lacroix, L.4
Patel, D.J.5
-
96
-
-
46749110017
-
Molecular dynamics and principal components analysis of human telomeric quadruplex multimers
-
Haider,S., Parkinson,G.N. and Neidle,S. (2008) Molecular dynamics and principal components analysis of human telomeric quadruplex multimers. Biophysical J., 95, 296-311.
-
(2008)
Biophysical J
, vol.95
, pp. 296-311
-
-
Haider, S.1
Parkinson, G.N.2
Neidle, S.3
-
97
-
-
47849126383
-
Ligands playing musical chairs with G-quadruplex DNA: A rapid and simple displacement assay for identifying selective G-quadruplex binders
-
Monchaud,D., Allain,C., Bertrand,H., Smargiasso,N., Rosu,F., Gabelica,V., De Cian,A., Mergny,J.L. and Teulade-Fichou,M.R. (2008) Ligands playing musical chairs with G-quadruplex DNA: A rapid and simple displacement assay for identifying selective G-quadruplex binders. Biochimie, 90, 1207-1223.
-
(2008)
Biochimie
, vol.90
, pp. 1207-1223
-
-
Monchaud, D.1
Allain, C.2
Bertrand, H.3
Smargiasso, N.4
Rosu, F.5
Gabelica, V.6
De Cian, A.7
Mergny, J.L.8
Teulade-Fichou, M.R.9
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