-
1
-
-
33646904758
-
Protein Folding-Simulation
-
references therein
-
Daggett, V. Protein Folding-Simulation Chem. Rev. 2006, 106, 1898-1916 and references therein.
-
(2006)
Chem. Rev.
, vol.106
, pp. 1898-1916
-
-
Daggett, V.1
-
2
-
-
33947485233
-
Nonpolar Group Participation in the Denaturation of Proteins by Urea and Guanidinium Salts. Model Compound Studies
-
Watlaufer, D. B.; Malik, S. K.; Stoller, L.; Coffin, R. L. Nonpolar Group Participation in the Denaturation of Proteins by Urea and Guanidinium Salts. Model Compound Studies J. Am. Chem. Soc. 1964, 86, 508-514
-
(1964)
J. Am. Chem. Soc.
, vol.86
, pp. 508-514
-
-
Watlaufer, D.B.1
Malik, S.K.2
Stoller, L.3
Coffin, R.L.4
-
3
-
-
33947088873
-
Nuclear magnetic resonance studies of aqueous urea solutions
-
Finer, E. G.; Franks, F.; Tait, M. J. Nuclear magnetic resonance studies of aqueous urea solutions J. Am. Chem. Soc. 1972, 94, 4424-4429
-
(1972)
J. Am. Chem. Soc.
, vol.94
, pp. 4424-4429
-
-
Finer, E.G.1
Franks, F.2
Tait, M.J.3
-
4
-
-
70349289438
-
Urea-Mediated Protein Denaturation: A Consensus View
-
Das, A.; Mukhopadhyay, C. Urea-Mediated Protein Denaturation: A Consensus View J. Phys. Chem. B 2009, 113, 12816-12824
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 12816-12824
-
-
Das, A.1
Mukhopadhyay, C.2
-
5
-
-
33749541104
-
Structural Approach to the Solvent Power of Water for Hydrocarbons; Urea as a Structure Breaker
-
Frank, H. S.; Franks, F. Structural Approach to the Solvent Power of Water for Hydrocarbons; Urea as a Structure Breaker J. Chem. Phys. 1968, 48, 4746-1-4746-12
-
(1968)
J. Chem. Phys.
, vol.48
, pp. 47461-474612
-
-
Frank, H.S.1
Franks, F.2
-
6
-
-
0032556206
-
Effect of the Protein Denaturants Urea and Guanidinium on Water Structure: A Structural and Thermodynamic Study
-
Vanzi, F.; Madan, B.; Sharp, K. Effect of the Protein Denaturants Urea and Guanidinium on Water Structure: A Structural and Thermodynamic Study J. Am. Chem. Soc. 1998, 120, 10748-10753
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 10748-10753
-
-
Vanzi, F.1
Madan, B.2
Sharp, K.3
-
7
-
-
1042304396
-
The effect of temperature on urea-urea interactions in water: A molecular dynamics simulation
-
Idrissi, A.; Cinar, E.; Longelin, S.; Damay, P. The effect of temperature on urea-urea interactions in water: a molecular dynamics simulation J. Mol. Liq. 2004, 110, 201-208
-
(2004)
J. Mol. Liq.
, vol.110
, pp. 201-208
-
-
Idrissi, A.1
Cinar, E.2
Longelin, S.3
Damay, P.4
-
9
-
-
62449341938
-
Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group
-
Lim, W. K.; Rösgen, J.; Englander, S. W. Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 2595-2600
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 2595-2600
-
-
Lim, W.K.1
Rösgen, J.2
Englander, S.W.3
-
10
-
-
55949131241
-
Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding
-
Hua, L.; Zhou, R.; Thirumalai, D.; Berne, B. J. Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 16928-16933
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 16928-16933
-
-
Hua, L.1
Zhou, R.2
Thirumalai, D.3
Berne, B.J.4
-
11
-
-
5444232817
-
Preventing Misfolding of the Prion Protein by Trimethylamine N-Oxide
-
Bennion, B. J.; DeMarco, M. L.; Daggett, V. Preventing Misfolding of the Prion Protein by Trimethylamine N-Oxide Biochemistry 2004, 43, 12955-12963
-
(2004)
Biochemistry
, vol.43
, pp. 12955-12963
-
-
Bennion, B.J.1
Demarco, M.L.2
Daggett, V.3
-
12
-
-
34250869055
-
Interactions between Hydrophobic and Ionic Solutes in Aqueous Guanidinium Chloride and Urea Solutions: Lessons for Protein Denaturation Mechanism
-
O'Brien, E. P.; Dima, R. I.; Brooks, B.; Thirumalai, D. Interactions between Hydrophobic and Ionic Solutes in Aqueous Guanidinium Chloride and Urea Solutions: Lessons for Protein Denaturation Mechanism J. Am. Chem. Soc. 2007, 129, 7346-7353
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 7346-7353
-
-
O'Brien, E.P.1
Dima, R.I.2
Brooks, B.3
Thirumalai, D.4
-
13
-
-
0037442337
-
Molecular Dynamics Simulations of End-to-End Contact Formation in Hydrocarbon Chains in Water and Aqueous Urea Solution
-
Mountain, R. D.; Thirumalai, D. Molecular Dynamics Simulations of End-to-End Contact Formation in Hydrocarbon Chains in Water and Aqueous Urea Solution J. Am. Chem. Soc. 2003, 125, 1950-1957
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1950-1957
-
-
Mountain, R.D.1
Thirumalai, D.2
-
14
-
-
0026729426
-
Protein interactions with urea and guanidinium chloride: A calorimetric study
-
Makhatadze, G. I.; Privalov, P. L. Protein interactions with urea and guanidinium chloride: A calorimetric study J. Mol. Biol. 1992, 226, 491-505
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 491-505
-
-
Makhatadze, G.I.1
Privalov, P.L.2
-
15
-
-
12444288031
-
Methane clustering in explicit water: Effect of urea on hydrophobic interactions
-
Oostenbrink, C.; Gunsteren, W. F. v. Methane clustering in explicit water: effect of urea on hydrophobic interactions Phys. Chem. Chem. Phys. 2005, 7, 53-58
-
(2005)
Phys. Chem. Chem. Phys.
, vol.7
, pp. 53-58
-
-
Oostenbrink, C.1
Gunsteren, W.F.V.2
-
16
-
-
78651119214
-
The Solubility of Amino Acids and Related Compounds in Aqueous Urea Solutions
-
Nozaki, Y.; Tanford, C. The Solubility of Amino Acids and Related Compounds in Aqueous Urea Solutions J. Biol. Chem. 1963, 238, 4074-4081
-
(1963)
J. Biol. Chem.
, vol.238
, pp. 4074-4081
-
-
Nozaki, Y.1
Tanford, C.2
-
17
-
-
77951567662
-
Urea-Induced Drying of Carbon Nanotubes Suggests Existence of a Dry Globule-like Transient State during Chemical Denaturation of Proteins
-
Das, P.; Zhou, R. Urea-Induced Drying of Carbon Nanotubes Suggests Existence of a Dry Globule-like Transient State During Chemical Denaturation of Proteins J. Phys. Chem. B 2010, 114, 5427-5430
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 5427-5430
-
-
Das, P.1
Zhou, R.2
-
18
-
-
63149153986
-
Urea Action on Hydrophobic Interactions
-
Zangi, R.; Zhou, R.; Berne, B. J. Urea Action on Hydrophobic Interactions J. Am. Chem. Soc. 2009, 131, 1535-1541
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 1535-1541
-
-
Zangi, R.1
Zhou, R.2
Berne, B.J.3
-
19
-
-
33646163934
-
Does Urea Denature Hydrophobic Interactions?
-
Lee, M.-E.; van der Vegt, N. F. A. Does Urea Denature Hydrophobic Interactions? J. Am. Chem. Soc. 2006, 128, 4948-4949
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 4948-4949
-
-
Lee, M.-E.1
Van Der Vegt, N.F.A.2
-
20
-
-
0000371745
-
Do denaturants interact with aromatic hydrocarbons in water?
-
Duffy, E. M.; Kowalczyk, P. J.; Jorgensen, W. L. Do denaturants interact with aromatic hydrocarbons in water? J. Am. Chem. Soc. 1993, 115, 9271-9275
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 9271-9275
-
-
Duffy, E.M.1
Kowalczyk, P.J.2
Jorgensen, W.L.3
-
21
-
-
0025822867
-
Solvent denaturation and stabilization of globular proteins
-
Alonso, D. O.; Dill, K. A. Solvent denaturation and stabilization of globular proteins Biochemistry 1991, 30, 5974-5985
-
(1991)
Biochemistry
, vol.30
, pp. 5974-5985
-
-
Alonso, D.O.1
Dill, K.A.2
-
22
-
-
67650363919
-
Urea Impedes the Hydrophobic Collapse of Partially Unfolded Proteins
-
Stumpe, M. C.; Grubmller, H. Urea Impedes the Hydrophobic Collapse of Partially Unfolded Proteins Biophys. J. 2009, 96, 3744-3752
-
(2009)
Biophys. J.
, vol.96
, pp. 3744-3752
-
-
Stumpe, M.C.1
Grubmller, H.2
-
23
-
-
75649108542
-
Effects of Urea, Tetramethyl Urea, and Trimethylamine N-Oxide on Aqueous Solution Structure and Solvation of Protein Backbones: A Molecular Dynamics Simulation Study
-
Wei, H.; Fan, Y.; Gao, Y. Q. Effects of Urea, Tetramethyl Urea, and Trimethylamine N-Oxide on Aqueous Solution Structure and Solvation of Protein Backbones: A Molecular Dynamics Simulation Study J. Phys. Chem. B 2010, 114, 557-568
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 557-568
-
-
Wei, H.1
Fan, Y.2
Gao, Y.Q.3
-
24
-
-
77955356966
-
The effects of side chain hydrophobicity on the denaturation of simple β-hairpins
-
Wei, H.; Shao, Q.; Gao, Y. Q. The effects of side chain hydrophobicity on the denaturation of simple β-hairpins Phys. Chem. Chem. Phys. 2010, 12, 9292-9299
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 9292-9299
-
-
Wei, H.1
Shao, Q.2
Gao, Y.Q.3
-
25
-
-
74949083228
-
Effects of Cosolvents on the Hydration of Carbon Nanotubes
-
Yang, L.; Gao, Y. Q. Effects of Cosolvents on the Hydration of Carbon Nanotubes J. Am. Chem. Soc. 2010, 132, 842-848
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 842-848
-
-
Yang, L.1
Gao, Y.Q.2
-
26
-
-
77956512505
-
Mutation of Charged Residues to Neutral Ones Accelerates Urea Denaturation of HP-35
-
Wei, H.; Yang, L.; Gao, Y. Q. Mutation of Charged Residues to Neutral Ones Accelerates Urea Denaturation of HP-35 J. Phys. Chem. B 2010, 114, 11820-11826
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 11820-11826
-
-
Wei, H.1
Yang, L.2
Gao, Y.Q.3
-
27
-
-
0038370011
-
The molecular basis for the chemical denaturation of proteins by urea
-
Bennion, B. J.; Daggett, V. The molecular basis for the chemical denaturation of proteins by urea Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 5142-5147
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 5142-5147
-
-
Bennion, B.J.1
Daggett, V.2
-
28
-
-
0028150954
-
Why do some organisms use a urea-methylamine mixture as osmolyte? Thermodynamic compensation of urea and trimethylamine N-oxide interactions with protein
-
Lin, T.-Y.; Timasheff, S. N. Why do some organisms use a urea-methylamine mixture as osmolyte? Thermodynamic compensation of urea and trimethylamine N-oxide interactions with protein Biochemistry 1994, 33, 12695-12701
-
(1994)
Biochemistry
, vol.33
, pp. 12695-12701
-
-
Lin, T.-Y.1
Timasheff, S.N.2
-
29
-
-
27244437952
-
Predicting the energetics of osmolyte-induced protein folding/unfolding
-
Auton, M.; Bolen, D. W. Predicting the energetics of osmolyte-induced protein folding/unfolding Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 15065-15068
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 15065-15068
-
-
Auton, M.1
Bolen, D.W.2
-
30
-
-
0037448912
-
Trimethylamine N-Oxide Stabilizes RNA Tertiary Structure and Attenuates the Denaturating Effects of Urea
-
Gluick, T. C.; Yadav, S. Trimethylamine N-Oxide Stabilizes RNA Tertiary Structure and Attenuates the Denaturating Effects of Urea J. Am. Chem. Soc. 2003, 125, 4418-4419
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 4418-4419
-
-
Gluick, T.C.1
Yadav, S.2
-
31
-
-
0029832863
-
Chemical chaperones interfere with the formation of scrapie prion protein
-
Tatzelt, J.; Prusiner, S.; Welch, W. Chemical chaperones interfere with the formation of scrapie prion protein EMBO J. 1996, 15, 6363-6373
-
(1996)
EMBO J.
, vol.15
, pp. 6363-6373
-
-
Tatzelt, J.1
Prusiner, S.2
Welch, W.3
-
32
-
-
0031425079
-
Strategies for correcting the delta F508 CFTR protein-folding defect
-
Brown, C.; Hong-Brown, L. Q.; Welch, W. Strategies for correcting the delta F508 CFTR protein-folding defect Bioenerg. Biomembr. 1997, 29, 491-502
-
(1997)
Bioenerg. Biomembr.
, vol.29
, pp. 491-502
-
-
Brown, C.1
Hong-Brown, L.Q.2
Welch, W.3
-
33
-
-
65249112694
-
Osmolyte Counteracts Urea-Induced Denaturation of α-Chymotrypsin
-
Venkatesu, P.; Lee, M.-J.; Lin, H.-m. Osmolyte Counteracts Urea-Induced Denaturation of α-Chymotrypsin J. Phys. Chem. B 2009, 113, 5327-5338
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 5327-5338
-
-
Venkatesu, P.1
Lee, M.-J.2
Lin, H.-M.3
-
34
-
-
58049184362
-
Effect of Osmolytes on Pressure-Induced Unfolding of Proteins: A High-Pressure SAXS Study
-
Krywka, C.; Sternemann, C.; Paulus, M.; Tolen, M.; Royer, C.; Winter, R. Effect of Osmolytes on Pressure-Induced Unfolding of Proteins: A High-Pressure SAXS Study ChemPhysChem 2008, 9, 2809-2815
-
(2008)
ChemPhysChem
, vol.9
, pp. 2809-2815
-
-
Krywka, C.1
Sternemann, C.2
Paulus, M.3
Tolen, M.4
Royer, C.5
Winter, R.6
-
35
-
-
0030762556
-
A Naturally Occurring Protective System in Urea-Rich Cells: Mechanism of Osmolyte Protection of Proteins against Urea Denaturation
-
Wang, A.; Bolen, D. W. A Naturally Occurring Protective System in Urea-Rich Cells: Mechanism of Osmolyte Protection of Proteins against Urea Denaturation Biochemistry 1997, 36, 9101-9108
-
(1997)
Biochemistry
, vol.36
, pp. 9101-9108
-
-
Wang, A.1
Bolen, D.W.2
-
36
-
-
0037138672
-
The Molecular Mechanism of Stabilization of Proteins by TMAO and Its Ability to Counteract the Effects of Urea
-
Zou, Q.; Bennion, B. J.; Daggett, V.; Murphy, K. P. The Molecular Mechanism of Stabilization of Proteins by TMAO and Its Ability to Counteract the Effects of Urea J. Am. Chem. Soc. 2002, 124, 1192-1202
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 1192-1202
-
-
Zou, Q.1
Bennion, B.J.2
Daggett, V.3
Murphy, K.P.4
-
37
-
-
34247121912
-
Structure and Interaction in Aqueous UreaTrimethylamine-N-oxide Solutions
-
Paul, S.; Patey, G. N. Structure and Interaction in Aqueous UreaTrimethylamine-N-oxide Solutions J. Am. Chem. Soc. 2007, 129, 4476-4482
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 4476-4482
-
-
Paul, S.1
Patey, G.N.2
-
38
-
-
0034681955
-
Vapor Pressure Osmometry Studies of OsmolyteProtein Interactions: Implications for the Action of Osmoprotectants in Vivo and for the Interpretation of "osmotic Stress" Experiments in Vitro
-
Courtenay, E. S.; Capp, M. W.; Anderson, C. F.; Record, M. T., Jr. Vapor Pressure Osmometry Studies of OsmolyteProtein Interactions: Implications for the Action of Osmoprotectants in Vivo and for the Interpretation of "Osmotic Stress" Experiments in Vitro Biochemistry 2000, 39, 4455-4471
-
(2000)
Biochemistry
, vol.39
, pp. 4455-4471
-
-
Courtenay, E.S.1
Capp, M.W.2
Anderson, C.F.3
Record, Jr.M.T.4
-
39
-
-
0035958656
-
The osmophobic effect: Natural selection of a thermodynamic force in protein folding
-
Bolen, D. W.; Baskakov, I. V. The osmophobic effect: natural selection of a thermodynamic force in protein folding J. Mol. Biol. 2001, 310, 955-963
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 955-963
-
-
Bolen, D.W.1
Baskakov, I.V.2
-
40
-
-
2942718829
-
A Combined Simulation and Kirkwood-Buff Approach to Quantify Cosolvent Effects on the Conformational Preferences of Peptides in Solution
-
Aburi, M.; Smith, P. E. A Combined Simulation and Kirkwood-Buff Approach to Quantify Cosolvent Effects on the Conformational Preferences of Peptides in Solution J. Phys. Chem. B 2004, 108, 7382-7388
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 7382-7388
-
-
Aburi, M.1
Smith, P.E.2
-
41
-
-
0842342617
-
Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments
-
Shimizu, S. Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 1195-1199
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 1195-1199
-
-
Shimizu, S.1
-
42
-
-
77949878597
-
Trimethylamine N-oxide influence on the backbone of proteins: An oligoglycine model
-
Hu, C. Y.; Lynch, G. C.; Kokubo, H.; Pettitt, B. M. Trimethylamine N-oxide influence on the backbone of proteins: An oligoglycine model Proteins 2010, 78, 695-704
-
(2010)
Proteins
, vol.78
, pp. 695-704
-
-
Hu, C.Y.1
Lynch, G.C.2
Kokubo, H.3
Pettitt, B.M.4
-
43
-
-
79951529371
-
Peptide Conformational Preferences in Osmolyte Solutions: Transfer Free Energies of Decaalanine
-
Kokubo, H.; Hu, C. Y.; Pettitt, B. M. Peptide Conformational Preferences in Osmolyte Solutions: Transfer Free Energies of Decaalanine J. Am. Chem. Soc. 2011, 133, 1849-1858
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 1849-1858
-
-
Kokubo, H.1
Hu, C.Y.2
Pettitt, B.M.3
-
44
-
-
0037633978
-
Measuring the stability of partly folded proteins using TMAO
-
Mello, C. C.; Barrick, D. Measuring the stability of partly folded proteins using TMAO Protein Sci. 2003, 12, 1522-1529
-
(2003)
Protein Sci.
, vol.12
, pp. 1522-1529
-
-
Mello, C.C.1
Barrick, D.2
-
45
-
-
33846521172
-
Mixed osmolytes: The degree to which one osmolyte affects the protein stabilizing ability of another
-
Holthauzen, L. M. F.; Bolen, D. W. Mixed osmolytes: The degree to which one osmolyte affects the protein stabilizing ability of another Protein Sci. 2007, 16, 293-298
-
(2007)
Protein Sci.
, vol.16
, pp. 293-298
-
-
Holthauzen, L.M.F.1
Bolen, D.W.2
-
46
-
-
23244459863
-
Osmolyte Trimethylamine-N-Oxide Does Not Affect the Strength of Hydrophobic Interactions: Origin of Osmolyte Compatibility
-
Athawale, M. V.; Dordick, J. S.; Garde, S. Osmolyte Trimethylamine-N- Oxide Does Not Affect the Strength of Hydrophobic Interactions: Origin of Osmolyte Compatibility Biophys. J. 2005, 89, 858-866
-
(2005)
Biophys. J.
, vol.89
, pp. 858-866
-
-
Athawale, M.V.1
Dordick, J.S.2
Garde, S.3
-
47
-
-
0028862864
-
The Peptide Backbone Plays a Dominant Role in Protein Stabilization by Naturally Occurring Osmolytes
-
Liu, Y.; Bolen, D. W. The Peptide Backbone Plays a Dominant Role in Protein Stabilization by Naturally Occurring Osmolytes Biochemistry 1995, 34, 12884-12891
-
(1995)
Biochemistry
, vol.34
, pp. 12884-12891
-
-
Liu, Y.1
Bolen, D.W.2
-
48
-
-
0842304735
-
Additive Transfer Free Energies of the Peptide Backbone Unit That Are Independent of the Model Compound and the Choice of Concentration Scale
-
Auton, M.; Bolen, D. W. Additive Transfer Free Energies of the Peptide Backbone Unit That Are Independent of the Model Compound and the Choice of Concentration Scale Biochemistry 2004, 43, 1329-1342
-
(2004)
Biochemistry
, vol.43
, pp. 1329-1342
-
-
Auton, M.1
Bolen, D.W.2
-
49
-
-
1242346370
-
The missing term in effective pair potentials
-
Berendsen, H. J. C.; Grigera, J. R.; Straatsma, T. P. The missing term in effective pair potentials J. Phys. Chem. 1987, 91, 6269-6271
-
(1987)
J. Phys. Chem.
, vol.91
, pp. 6269-6271
-
-
Berendsen, H.J.C.1
Grigera, J.R.2
Straatsma, T.P.3
-
50
-
-
0038717923
-
Binary Phases of Aliphatic N-Oxides and Water: Force Field Development and Molecular Dynamics Simulation
-
Kast, K. M.; Brickmann, J.; Kast, S. M.; Berry, R. S. R. Binary Phases of Aliphatic N-Oxides and Water: Force Field Development and Molecular Dynamics Simulation J. Phys. Chem. A 2003, 107, 5342-5351
-
(2003)
J. Phys. Chem. A
, vol.107
, pp. 5342-5351
-
-
Kast, K.M.1
Brickmann, J.2
Kast, S.M.3
Berry, R.S.R.4
-
51
-
-
33845376931
-
Optimized intermolecular potential functions for amides and peptides. Structure and properties of liquid amides
-
Jorgensen, W. L.; Swenson, C. J. Optimized intermolecular potential functions for amides and peptides. Structure and properties of liquid amides J. Am. Chem. Soc. 1985, 107, 569-578
-
(1985)
J. Am. Chem. Soc.
, vol.107
, pp. 569-578
-
-
Jorgensen, W.L.1
Swenson, C.J.2
-
52
-
-
85005481062
-
Urea: Potential Functions, log P, and Free Energy of Hydration
-
Duffy, E. M.; Severance, D. L.; Jorgensen, W. L. Urea: Potential Functions, log P, and Free Energy of Hydration Isr. J. Chem. 1993, 33, 323-330
-
(1993)
Isr. J. Chem.
, vol.33
, pp. 323-330
-
-
Duffy, E.M.1
Severance, D.L.2
Jorgensen, W.L.3
-
54
-
-
84872582765
-
Crucial Importance of Water Structure Modification on Trimethylamine N-Oxide Counteracting Effect at High Pressure
-
Sarma, R.; Paul, S. Crucial Importance of Water Structure Modification on Trimethylamine N-Oxide Counteracting Effect at High Pressure J. Phys. Chem. B 2013, 117, 677-689
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 677-689
-
-
Sarma, R.1
Paul, S.2
-
55
-
-
84858048738
-
Association of Small Hydrophobic Solute in Presence of the Osmolytes Urea and Trimethylamine-N-oxide
-
Sarma, R.; Paul, S. Association of Small Hydrophobic Solute in Presence of the Osmolytes Urea and Trimethylamine-N-oxide J. Phys. Chem. B 2012, 116, 2831-2841
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 2831-2841
-
-
Sarma, R.1
Paul, S.2
-
56
-
-
80855156841
-
Hydrophobic interactions in presence of osmolytes urea and trimethylamine-N-oxide
-
Sarma, R.; Paul, S. Hydrophobic interactions in presence of osmolytes urea and trimethylamine-N-oxide J. Chem. Phys. 2011, 135, 174501-1-174501-13
-
(2011)
J. Chem. Phys.
, vol.135
, pp. 1745011-17450113
-
-
Sarma, R.1
Paul, S.2
-
57
-
-
2342614722
-
Counteraction of urea-induced protein denaturation by trimethylamine N-oxide: A chemical chaperone at atomic resolution
-
Bennion, B. J.; Daggett, V. Counteraction of urea-induced protein denaturation by trimethylamine N-oxide: A chemical chaperone at atomic resolution Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 6433-6438
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 6433-6438
-
-
Bennion, B.J.1
Daggett, V.2
-
58
-
-
34247627604
-
Dynamical properties of liquid water from ab initio molecular dynamics performed in the complete basis set limit
-
Lee, H.-S.; Tuckerman, M. E. Dynamical properties of liquid water from ab initio molecular dynamics performed in the complete basis set limit J. Chem. Phys. 2007, 126, 164501-1-164501-16
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 1645011-16450116
-
-
Lee, H.-S.1
Tuckerman, M.E.2
-
59
-
-
77749344662
-
Water Hydrogen Bond Dynamics in Aqueous Solutions of Amphiphiles
-
Stirnemann, G.; Hynes, J. T.; Laage, D. Water Hydrogen Bond Dynamics in Aqueous Solutions of Amphiphiles J. Phys. Chem. B 2010, 114, 3052-3059
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 3052-3059
-
-
Stirnemann, G.1
Hynes, J.T.2
Laage, D.3
-
60
-
-
84860289944
-
Complex Formation in Aqueous Trimethylamine-N-oxide (TMAO) Solutions
-
Hunger, J.; Tielrooij, K.-J.; Buchner, R.; Bonn, M.; Bakker, H. J. Complex Formation in Aqueous Trimethylamine-N-oxide (TMAO) Solutions J. Phys. Chem. B 2012, 116, 4783-4795
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 4783-4795
-
-
Hunger, J.1
Tielrooij, K.-J.2
Buchner, R.3
Bonn, M.4
Bakker, H.J.5
-
61
-
-
72249104136
-
Counteraction of Urea by Trimethylamine N-Oxide Is Due to Direct Interaction
-
Meersman, F.; Bowron, D.; Soper, A. K.; Koch, M. H. J. Counteraction of Urea by Trimethylamine N-Oxide Is Due to Direct Interaction Biophys. J. 2009, 97, 2559-2566
-
(2009)
Biophys. J.
, vol.97
, pp. 2559-2566
-
-
Meersman, F.1
Bowron, D.2
Soper, A.K.3
Koch, M.H.J.4
-
62
-
-
84857393452
-
Volume Exclusion and H-Bonding Dominate the Thermodynamics and Solvation of Trimethylamine-N-oxide in Aqueous Urea
-
Rösgen, J.; Jackson-Atogi, R. Volume Exclusion and H-Bonding Dominate the Thermodynamics and Solvation of Trimethylamine-N-oxide in Aqueous Urea J. Am. Chem. Soc. 2012, 134, 3590-3597
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 3590-3597
-
-
Rösgen, J.1
Jackson-Atogi, R.2
-
63
-
-
80855139861
-
Entropic Stabilization of Proteins by TMAO
-
Cho, S. S.; Reddy, G.; Straub, J. E.; Thirumalai, D. Entropic Stabilization of Proteins by TMAO J. Phys. Chem. B 2011, 115, 13401-13407
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 13401-13407
-
-
Cho, S.S.1
Reddy, G.2
Straub, J.E.3
Thirumalai, D.4
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