메뉴 건너뛰기




Volumn 425, Issue 11, 2013, Pages 1982-1998

Discovery and structural characterization of a new inhibitor series of HIV-1 nucleocapsid function: NMR solution structure determination of a ternary complex involving a 2:1 inhibitor/NC stoichiometry

Author keywords

binding studies; drug design; HIV 1 nucleocapsid; NMR spectroscopy; protein ligand structure

Indexed keywords

ANTI HUMAN IMMUNODEFICIENCY VIRUS AGENT; GUANOSINE; HUMAN IMMUNODEFICIENCY VIRUS 1 NUCLEOCAPSID PROTEIN INHIBITOR; NUCLEIC ACID BASE; NUCLEOCAPSID PROTEIN; OLIGONUCLEOTIDE; UNCLASSIFIED DRUG;

EID: 84877686314     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2013.02.022     Document Type: Article
Times cited : (40)

References (53)
  • 2
    • 84868702305 scopus 로고    scopus 로고
    • Long-term survival in HIV positive patients with up to 15 years of antiretroviral therapy
    • H. McManus, C.C. O'Connor, M. Boyd, J. Broom, D. Russell, and K. Watson Long-term survival in HIV positive patients with up to 15 years of antiretroviral therapy PLoS One 7 2012 e48839
    • (2012) PLoS One , vol.7 , pp. 48839
    • McManus, H.1    O'Connor, C.C.2    Boyd, M.3    Broom, J.4    Russell, D.5    Watson, K.6
  • 3
    • 84862119215 scopus 로고    scopus 로고
    • HIV-1 antiretroviral resistance scientific principles and clinical applications
    • M.W. Tang, and R.W. Shafer HIV-1 antiretroviral resistance scientific principles and clinical applications Drugs 72 2012 e1 e25
    • (2012) Drugs , vol.72
    • Tang, M.W.1    Shafer, R.W.2
  • 6
    • 77953491535 scopus 로고    scopus 로고
    • Unmet therapeutic needs in the new era of combination antiretroviral therapy for HIV-1
    • B. Taiwo, C. Hicks, and J. Eron Unmet therapeutic needs in the new era of combination antiretroviral therapy for HIV-1 J. Antimicrob. Chemother. 65 2010 1100 1107
    • (2010) J. Antimicrob. Chemother. , vol.65 , pp. 1100-1107
    • Taiwo, B.1    Hicks, C.2    Eron, J.3
  • 9
    • 80051752946 scopus 로고    scopus 로고
    • New approaches for antiviral targeting of HIV assembly
    • P.E. Prevelige Jr. New approaches for antiviral targeting of HIV assembly J. Mol. Biol. 410 2011 634 640
    • (2011) J. Mol. Biol. , vol.410 , pp. 634-640
    • Prevelige, Jr.P.E.1
  • 10
    • 84855600681 scopus 로고    scopus 로고
    • HIV type-1 Gag as a target for antiviral therapy
    • A.A. Waheed, and E.O. Freed HIV type-1 Gag as a target for antiviral therapy AIDS Res. Hum. Retroviruses 28 2012 54 75
    • (2012) AIDS Res. Hum. Retroviruses , vol.28 , pp. 54-75
    • Waheed, A.A.1    Freed, E.O.2
  • 11
    • 34250682229 scopus 로고    scopus 로고
    • Properties, functions, and drug targeting of the multifunctional nucleocapsid protein of the human immunodeficiency virus
    • J.-L. Darlix, J.L. Garrido, N. Morellet, Y. Mély, and H. de Rocquigny Properties, functions, and drug targeting of the multifunctional nucleocapsid protein of the human immunodeficiency virus Adv. Pharmacol. 55 2007 299 346
    • (2007) Adv. Pharmacol. , vol.55 , pp. 299-346
    • Darlix, J.-L.1    Garrido, J.L.2    Morellet, N.3    Mély, Y.4    De Rocquigny, H.5
  • 12
    • 78751670345 scopus 로고    scopus 로고
    • Properties and functions of the nucleocapsid protein in virus assembly
    • D. Muriaux, and J.-L. Darlix Properties and functions of the nucleocapsid protein in virus assembly RNA Biol. 7 2010 744 853
    • (2010) RNA Biol. , vol.7 , pp. 744-853
    • Muriaux, D.1    Darlix, J.-L.2
  • 13
    • 0037404501 scopus 로고    scopus 로고
    • Functional surfaces of the human immunodeficiency virus type 1 capsid protein
    • U.K. von Schwedler, K.M. Stray, J.E. Garrus, and W.I. Sundquist Functional surfaces of the human immunodeficiency virus type 1 capsid protein J. Virol. 77 2003 5439 5450
    • (2003) J. Virol. , vol.77 , pp. 5439-5450
    • Von Schwedler, U.K.1    Stray, K.M.2    Garrus, J.E.3    Sundquist, W.I.4
  • 14
    • 34848840882 scopus 로고    scopus 로고
    • How to assemble a capsid
    • W.I. Sundquist, and C.P. Hill How to assemble a capsid Cell 131 2007 17 19
    • (2007) Cell , vol.131 , pp. 17-19
    • Sundquist, W.I.1    Hill, C.P.2
  • 15
    • 0036094824 scopus 로고    scopus 로고
    • Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication
    • B.M. Forshey, U. von Schwedler, W.I. Sundquist, and C. Aiken Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication J. Virol. 76 2002 5667 5677
    • (2002) J. Virol. , vol.76 , pp. 5667-5677
    • Forshey, B.M.1    Von Schwedler, U.2    Sundquist, W.I.3    Aiken, C.4
  • 17
    • 84864007910 scopus 로고    scopus 로고
    • Distinct effects of two HIV-1 capsid assembly inhibitor families that bind the same site within the N-terminal domain of the viral CA protein
    • C.T. Lemke, S. Titolo, U. von Schwedler, N. Goudreau, J.-F. Mercier, and E. Wardrop Distinct effects of two HIV-1 capsid assembly inhibitor families that bind the same site within the N-terminal domain of the viral CA protein J. Virol. 86 2012 6643 6655
    • (2012) J. Virol. , vol.86 , pp. 6643-6655
    • Lemke, C.T.1    Titolo, S.2    Von Schwedler, U.3    Goudreau, N.4    Mercier, J.-F.5    Wardrop, E.6
  • 18
    • 78650512592 scopus 로고    scopus 로고
    • Discovery of a 1,5-dihydrobenzo[b][1,4]diazepine-2,4-dione series of inhibitors of HIV-1 capsid assembly
    • L.D. Fader, R. Bethell, P. Bonneau, M. Bös, Y. Bousquet, and M.G. Cordingley Discovery of a 1,5-dihydrobenzo[b][1,4]diazepine-2,4-dione series of inhibitors of HIV-1 capsid assembly Bioorg. Med. Chem. Lett. 21 2011 398 404
    • (2011) Bioorg. Med. Chem. Lett. , vol.21 , pp. 398-404
    • Fader, L.D.1    Bethell, R.2    Bonneau, P.3    Bös, M.4    Bousquet, Y.5    Cordingley, M.G.6
  • 19
    • 84870249453 scopus 로고    scopus 로고
    • Inhibition of HIV-1 capsid assembly; Optimization of the antiviral potency by site selective modifications at N1, C2 and C16 of a 5-(5-furan-2-yl-pyrazol-1-yl)-1H-benzimidazole scaffold
    • M. Tremblay, P. Bonneau, Y. Bousquet, P. DeRoy, J. Duan, and M. Duplessis Inhibition of HIV-1 capsid assembly; optimization of the antiviral potency by site selective modifications at N1, C2 and C16 of a 5-(5-furan-2-yl-pyrazol-1- yl)-1H-benzimidazole scaffold Bioorg. Med. Chem. Lett. 22 2012 7512 7517
    • (2012) Bioorg. Med. Chem. Lett. , vol.22 , pp. 7512-7517
    • Tremblay, M.1    Bonneau, P.2    Bousquet, Y.3    Deroy, P.4    Duan, J.5    Duplessis, M.6
  • 20
    • 0344610289 scopus 로고    scopus 로고
    • Nucleic acid binding-induced Gag dimerization in the assembly of Rous sarcoma virus particles in vitro
    • Y.M. Ma, and V.M. Vogt Nucleic acid binding-induced Gag dimerization in the assembly of Rous sarcoma virus particles in vitro J. Virol. 78 2004 52 60
    • (2004) J. Virol. , vol.78 , pp. 52-60
    • Ma, Y.M.1    Vogt, V.M.2
  • 21
    • 0031935140 scopus 로고    scopus 로고
    • Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides
    • R.J. Fisher, A. Rein, M. Fivash, M.A. Urbaneja, J.R. Casas-Finet, M. Medaglia, and L.E. Henderson Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides J. Virol. 72 1998 1902 1909
    • (1998) J. Virol. , vol.72 , pp. 1902-1909
    • Fisher, R.J.1    Rein, A.2    Fivash, M.3    Urbaneja, M.A.4    Casas-Finet, J.R.5    Medaglia, M.6    Henderson, L.E.7
  • 22
    • 0033593039 scopus 로고    scopus 로고
    • Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: A fluorescence study
    • C. Vuilleumier, E. Bombarda, N. Morellet, D. Gerard, B.P. Roques, and Y. Mely Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: a fluorescence study Biochemistry 38 1998 16816 16825
    • (1998) Biochemistry , vol.38 , pp. 16816-16825
    • Vuilleumier, C.1    Bombarda, E.2    Morellet, N.3    Gerard, D.4    Roques, B.P.5    Mely, Y.6
  • 25
    • 0242663237 scopus 로고    scopus 로고
    • A point-charge force field for molecular mechanics simulations of proteins
    • Y. Duan, C. Wu, S. Chowdhury, M.C. Lee, G. Xiong, and W. Zhang A point-charge force field for molecular mechanics simulations of proteins J. Comput. Chem. 24 2003 1999 2012
    • (2003) J. Comput. Chem. , vol.24 , pp. 1999-2012
    • Duan, Y.1    Wu, C.2    Chowdhury, S.3    Lee, M.C.4    Xiong, G.5    Zhang, W.6
  • 27
    • 0001041959 scopus 로고    scopus 로고
    • Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I
    • A. Jakalian, B.L. Bush, D.B. Jack, and C.I. Bayly Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I Method J. Comput. Chem. 21 2000 132 146
    • (2000) Method J. Comput. Chem. , vol.21 , pp. 132-146
    • Jakalian, A.1    Bush, B.L.2    Jack, D.B.3    Bayly, C.I.4
  • 29
    • 0027077686 scopus 로고
    • Nucleocapsid zinc fingers detected in retroviruses: EXAFS studies of intact viruses and the solution-state structure of the nucleocapsid protein from HIV-1
    • M.F. Summers, L.E. Henderson, M.R. Chance, J.W. Bess Jr, T.L. South, and P.R. Blake Nucleocapsid zinc fingers detected in retroviruses: EXAFS studies of intact viruses and the solution-state structure of the nucleocapsid protein from HIV-1 Protein Sci. 1 1992 563 574
    • (1992) Protein Sci. , vol.1 , pp. 563-574
    • Summers, M.F.1    Henderson, L.E.2    Chance, M.R.3    Bess, Jr.J.W.4    South, T.L.5    Blake, P.R.6
  • 31
    • 2242469712 scopus 로고    scopus 로고
    • Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element
    • R.N. De Guzman, Z.R. Wu, C.C. Stalling, L. Pappalardo, P.N. Borer, and M.F. Summers Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element Science 279 1998 384 388
    • (1998) Science , vol.279 , pp. 384-388
    • De Guzman, R.N.1    Wu, Z.R.2    Stalling, C.C.3    Pappalardo, L.4    Borer, P.N.5    Summers, M.F.6
  • 32
    • 0034636984 scopus 로고    scopus 로고
    • NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the RNA packaging signal: Implications for genome recognition
    • G.K. Amarasinghe, R.N. De Guzman, R.B. Turner, K.J. Chancellor, Z.R. Wu, and M.F. Summers NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the RNA packaging signal: implications for genome recognition J. Mol. Biol. 301 2000 491 511
    • (2000) J. Mol. Biol. , vol.301 , pp. 491-511
    • Amarasinghe, G.K.1    De Guzman, R.N.2    Turner, R.B.3    Chancellor, K.J.4    Wu, Z.R.5    Summers, M.F.6
  • 33
    • 53749093357 scopus 로고    scopus 로고
    • How the HIV-1 nucleocapsid protein binds and destabilises the (-)primer binding site during reverse transcription
    • S. Bourbigot, N. Ramalanjaona, C. Boudier, G.F.J. Salgado, B.P. Roques, and Y. Mély How the HIV-1 nucleocapsid protein binds and destabilises the (-)primer binding site during reverse transcription J. Mol. Biol. 383 2008 1112 1128
    • (2008) J. Mol. Biol. , vol.383 , pp. 1112-1128
    • Bourbigot, S.1    Ramalanjaona, N.2    Boudier, C.3    Salgado, G.F.J.4    Roques, B.P.5    Mély, Y.6
  • 34
    • 79956003291 scopus 로고    scopus 로고
    • Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: Role of sugar deoxyriboses in the binding polarity of NC
    • A. Bazzi, L. Zargarian, F. Chaminade, C. Boudier, H. De Rocquigny, and B. René Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC Nucleic Acids Res. 39 2011 3903 3916
    • (2011) Nucleic Acids Res. , vol.39 , pp. 3903-3916
    • Bazzi, A.1    Zargarian, L.2    Chaminade, F.3    Boudier, C.4    De Rocquigny, H.5    René, B.6
  • 35
    • 0035861980 scopus 로고    scopus 로고
    • Stem-loop SL4 of the HIV-1 RNA packaging signal exhibits weak affinity for the nucleocapsid protein. Structural studies and implications for genome recognition.
    • G.K. Amarasinghe, J. Zhou, M. Miskimon, K.J. Chancellor, J.A. McDonald, and A.G. Matthews Stem-loop SL4 of the HIV-1 RNA packaging signal exhibits weak affinity for the nucleocapsid protein. Structural studies and implications for genome recognition. J. Mol. Biol. 314 2001 961 970
    • (2001) J. Mol. Biol. , vol.314 , pp. 961-970
    • Amarasinghe, G.K.1    Zhou, J.2    Miskimon, M.3    Chancellor, K.J.4    McDonald, J.A.5    Matthews, A.G.6
  • 36
    • 0033730547 scopus 로고    scopus 로고
    • HIV-1 NCp7 as the target for the design of novel antiviral agents
    • S. Druillennec, and B.P. Roques HIV-1 NCp7 as the target for the design of novel antiviral agents Drug News Perspect. 13 2000 337 349
    • (2000) Drug News Perspect. , vol.13 , pp. 337-349
    • Druillennec, S.1    Roques, B.P.2
  • 37
  • 38
    • 20944436272 scopus 로고    scopus 로고
    • Studies on the mechanism of inactivation of the HIV-1 nucleocapsid protein NCp7 with 2-mercaptobenzamide thioesters
    • L.M. Jenkins, J.C. Byrd, T. Hara, P. Srivastava, S.J. Mazur, and S.J. Stahl Studies on the mechanism of inactivation of the HIV-1 nucleocapsid protein NCp7 with 2-mercaptobenzamide thioesters J. Med. Chem. 48 2005 2847 2858
    • (2005) J. Med. Chem. , vol.48 , pp. 2847-2858
    • Jenkins, L.M.1    Byrd, J.C.2    Hara, T.3    Srivastava, P.4    Mazur, S.J.5    Stahl, S.J.6
  • 39
    • 84868657764 scopus 로고    scopus 로고
    • A phenyl-thiadiazolylidene-amine derivative ejects zinc from retroviral nucleocapsid zinc fingers and inactivates HIV virions
    • T. Vercruysse, B. Basta, W. Dehaen, N. Humbert, J. Balzarini, and F. Debaene A phenyl-thiadiazolylidene-amine derivative ejects zinc from retroviral nucleocapsid zinc fingers and inactivates HIV virions Retrovirology 9 2012 95
    • (2012) Retrovirology , vol.9 , pp. 95
    • Vercruysse, T.1    Basta, B.2    Dehaen, W.3    Humbert, N.4    Balzarini, J.5    Debaene, F.6
  • 40
    • 37349074474 scopus 로고    scopus 로고
    • Topical microbicides: A promising approach for controlling the AIDS pandemic via retroviral zinc finger inhibitors
    • J.A. Turpin, M.L. Schito, L.M. Jenkins, J.K. Inman, and E. Appella Topical microbicides: a promising approach for controlling the AIDS pandemic via retroviral zinc finger inhibitors Adv. Pharmacol. 56 2008 229 256
    • (2008) Adv. Pharmacol. , vol.56 , pp. 229-256
    • Turpin, J.A.1    Schito, M.L.2    Jenkins, L.M.3    Inman, J.K.4    Appella, E.5
  • 41
    • 69449098051 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 nucleocapsid inhibitors impede trans infection in cellular and explant models and protect nonhuman primates from infection
    • G.S. Wallace, C. Cheng-Mayer, M.L. Schito, P. Fletcher, L.M. Miller Jenkins, and R. Hayashi Human immunodeficiency virus type 1 nucleocapsid inhibitors impede trans infection in cellular and explant models and protect nonhuman primates from infection J. Virol. 83 2009 9175 9182
    • (2009) J. Virol. , vol.83 , pp. 9175-9182
    • Wallace, G.S.1    Cheng-Mayer, C.2    Schito, M.L.3    Fletcher, P.4    Miller Jenkins, L.M.5    Hayashi, R.6
  • 43
    • 80051775097 scopus 로고    scopus 로고
    • Identification of a methylated oligoribonucleotide as a potent inhibitor of HIV-1 reverse transcription complex
    • B. Grigorov, A. Bocquin, C. Gabus, S. Avilov, Y. Mély, and A. Agopian Identification of a methylated oligoribonucleotide as a potent inhibitor of HIV-1 reverse transcription complex Nucleic Acids Res. 39 2011 5586 5596
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5586-5596
    • Grigorov, B.1    Bocquin, A.2    Gabus, C.3    Avilov, S.4    Mély, Y.5    Agopian, A.6
  • 45
    • 49149112473 scopus 로고    scopus 로고
    • Examination of specific binding activity of aptamer RNAs to the HIV-NC by using a cell-based in vivo assay for protein-RNA interaction
    • Y.Y. Jeong, S.H. Kim, S.I. Jang, and J.C. You Examination of specific binding activity of aptamer RNAs to the HIV-NC by using a cell-based in vivo assay for protein-RNA interaction BMB Rep. 41 2008 511 515
    • (2008) BMB Rep. , vol.41 , pp. 511-515
    • Jeong, Y.Y.1    Kim, S.H.2    Jang, S.I.3    You, J.C.4
  • 46
    • 0036296520 scopus 로고    scopus 로고
    • Selection and stabilization of the RNA aptamers against the human immunodeficiency virus type-1 nucleocapsid protein
    • S.J. Kim, M.Y. Kim, J.H. Lee, J.C. You, and S. Jeong Selection and stabilization of the RNA aptamers against the human immunodeficiency virus type-1 nucleocapsid protein Biochem. Biophys. Res. Commun. 291 2002 925 931
    • (2002) Biochem. Biophys. Res. Commun. , vol.291 , pp. 925-931
    • Kim, S.J.1    Kim, M.Y.2    Lee, J.H.3    You, J.C.4    Jeong, S.5
  • 48
    • 66049123942 scopus 로고    scopus 로고
    • Identification by high throughput screening of small compounds inhibiting the nucleic acid destabilization activity of the HIV-1 nucleocapsid protein
    • V. Shvadchak, S. Sanglier, S. Rocle, P. Villa, J. Haiech, and M. Hibert Identification by high throughput screening of small compounds inhibiting the nucleic acid destabilization activity of the HIV-1 nucleocapsid protein Biochimie 91 2009 916 923
    • (2009) Biochimie , vol.91 , pp. 916-923
    • Shvadchak, V.1    Sanglier, S.2    Rocle, S.3    Villa, P.4    Haiech, J.5    Hibert, M.6
  • 49
    • 84862291648 scopus 로고    scopus 로고
    • Identification of HIV-1 inhibitors targeting the nucleocapsid protein
    • S. Breuer, M.W. Chang, J. Yuan, and B.E. Torbett Identification of HIV-1 inhibitors targeting the nucleocapsid protein J. Med. Chem. 55 2012 4968 4977
    • (2012) J. Med. Chem. , vol.55 , pp. 4968-4977
    • Breuer, S.1    Chang, M.W.2    Yuan, J.3    Torbett, B.E.4
  • 50
    • 84868612998 scopus 로고    scopus 로고
    • Use of virtual screening for discovering antiretroviral compounds interacting with the HIV-1 nucleocapsid protein
    • M. Mori, P. Schult-Dietrich, B. Szafarowicz, N. Humbert, F. Debaene, and S. Sanglier-Cianferani Use of virtual screening for discovering antiretroviral compounds interacting with the HIV-1 nucleocapsid protein Virus Res. 169 2012 377 387
    • (2012) Virus Res. , vol.169 , pp. 377-387
    • Mori, M.1    Schult-Dietrich, P.2    Szafarowicz, B.3    Humbert, N.4    Debaene, F.5    Sanglier-Cianferani, S.6
  • 52
    • 0347722841 scopus 로고    scopus 로고
    • Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients
    • M. Sattler, J. Schleucher, and C. Griesinger Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients Prog. Nucl. Magn. Reson. Spectrosc. 34 1999 93 158
    • (1999) Prog. Nucl. Magn. Reson. Spectrosc. , vol.34 , pp. 93-158
    • Sattler, M.1    Schleucher, J.2    Griesinger, C.3
  • 53
    • 0037188355 scopus 로고    scopus 로고
    • Insights into the structure and dynamics of the dinuclear zinc β-lactamase site from Bacteroides fragilis
    • D. Suarez, E.N. Brothers, and K.M. Merz Jr. Insights into the structure and dynamics of the dinuclear zinc β-lactamase site from Bacteroides fragilis Biochemistry 41 2002 6615 6630
    • (2002) Biochemistry , vol.41 , pp. 6615-6630
    • Suarez, D.1    Brothers, E.N.2    Merz, Jr.K.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.