-
1
-
-
0035256698
-
Untangling the ErbB signalling network
-
10.1038/35052073 1:CAS:528:DC%2BD3MXivVWnt7k%3D
-
Yarden Y, Sliwkowski MX (2001) Untangling the ErbB signalling network. Nat Rev Mol Cell Biol 2:127-137
-
(2001)
Nat Rev Mol Cell Biol
, vol.2
, pp. 127-137
-
-
Yarden, Y.1
Sliwkowski, M.X.2
-
2
-
-
44449127592
-
The epidermal growth factor receptor family: Biology driving targeted therapeutics
-
10.1007/s00018-008-7440-8 1:CAS:528:DC%2BD1cXmt12qu7o%3D
-
Wieduwilt M, Moasser M (2008) The epidermal growth factor receptor family: biology driving targeted therapeutics. Cell Mol Life Sci 65:1566-1584
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 1566-1584
-
-
Wieduwilt, M.1
Moasser, M.2
-
3
-
-
0037291226
-
The crystal structure of a truncated ErbB2 ectodomain reveals an active conformation, poised to interact with other ErbB receptors
-
10.1016/S1097-2765(03)00048-0 1:CAS:528:DC%2BD3sXit1WgsLo%3D
-
Garrett TPJ, McKern NM, Lou M, Elleman TC, Adams TE, Lovrecz GO, Kofler M, Jorissen RN, Nice EC, Burgess AW, Ward CW (2003) The crystal structure of a truncated ErbB2 ectodomain reveals an active conformation, poised to interact with other ErbB receptors. Mol Cell 11:495-505
-
(2003)
Mol Cell
, vol.11
, pp. 495-505
-
-
Garrett, T.P.J.1
McKern, N.M.2
Lou, M.3
Elleman, T.C.4
Adams, T.E.5
Lovrecz, G.O.6
Kofler, M.7
Jorissen, R.N.8
Nice, E.C.9
Burgess, A.W.10
Ward, C.W.11
-
4
-
-
18644370411
-
Crystal structure of a truncated epidermal growth factor receptor extracellular domain bound to transforming growth factor-a
-
10.1016/S0092-8674(02)00940-6 1:CAS:528:DC%2BD38XnsFKisL4%3D
-
Garrett TPJ, McKern NM, Lou M, Elleman TC, Adams TE, Lovrecz GO, Zhu HJ, Walker F, Frenkel MJ, Hoyne PA, Jorissen RN, Nice EC, Burgess AW, Ward CW (2002) Crystal structure of a truncated epidermal growth factor receptor extracellular domain bound to transforming growth factor-a. Cell 110:763-773
-
(2002)
Cell
, vol.110
, pp. 763-773
-
-
Garrett, T.P.J.1
McKern, N.M.2
Lou, M.3
Elleman, T.C.4
Adams, T.E.5
Lovrecz, G.O.6
Zhu, H.J.7
Walker, F.8
Frenkel, M.J.9
Hoyne, P.A.10
Jorissen, R.N.11
Nice, E.C.12
Burgess, A.W.13
Ward, C.W.14
-
5
-
-
18644386251
-
Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains
-
10.1016/S0092-8674(02)00963-7 1:CAS:528:DC%2BD38XnsFKisL8%3D
-
Ogiso H, Ishitani R, Nureki O, Fukai S, Yamanaka M, Kim JH, Ogiso H, Ishitani R, Nureki O, Fukai S, Yamanaka M, Kim JH (2002) Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains. Cell 110:775-787
-
(2002)
Cell
, vol.110
, pp. 775-787
-
-
Ogiso, H.1
Ishitani, R.2
Nureki, O.3
Fukai, S.4
Yamanaka, M.5
Kim, J.H.6
Ogiso, H.7
Ishitani, R.8
Nureki, O.9
Fukai, S.10
Yamanaka, M.11
Kim, J.H.12
-
6
-
-
0037291769
-
EGF activates its receptor by removing interactions that autoinhibit ectodomain dimerization
-
10.1016/S1097-2765(03)00047-9 1:CAS:528:DC%2BD3sXit1WgsLs%3D
-
Ferguson KM, Berger MB, Mendrola JM, Cho HS, Leahy DJ, Lemmon MA (2003) EGF activates its receptor by removing interactions that autoinhibit ectodomain dimerization. Mol Cell 11:507-517
-
(2003)
Mol Cell
, vol.11
, pp. 507-517
-
-
Ferguson, K.M.1
Berger, M.B.2
Mendrola, J.M.3
Cho, H.S.4
Leahy, D.J.5
Lemmon, M.A.6
-
7
-
-
0037162799
-
Structure of the extracellular region of HER3 reveals an interdomain tether
-
10.1126/science.1074611 1:CAS:528:DC%2BD38Xms1ejtb4%3D
-
Cho HS, Leahy DJ (2002) Structure of the extracellular region of HER3 reveals an interdomain tether. Science 297:1330-1333
-
(2002)
Science
, vol.297
, pp. 1330-1333
-
-
Cho, H.S.1
Leahy, D.J.2
-
8
-
-
0037434791
-
Structure of the extracellular region of HER2 alone and in complex with the Herceptin fab
-
10.1038/nature01392 1:CAS:528:DC%2BD3sXhsV2rtrw%3D
-
Cho HS, Mason K, Ramyar KX, Stanley AM, Gabelli SB, Denney DW Jr, Leahy DJ (2003) Structure of the extracellular region of HER2 alone and in complex with the Herceptin fab. Nature 421:756-760
-
(2003)
Nature
, vol.421
, pp. 756-760
-
-
Cho, H.S.1
Mason, K.2
Ramyar, K.X.3
Stanley, A.M.4
Gabelli, S.B.5
Denney, Jr.D.W.6
Leahy, D.J.7
-
9
-
-
78649548465
-
Structural evidence for loose linkage between ligand binding and kinase activation in the epidermal growth factor receptor
-
10.1128/MCB.00742-10 1:CAS:528:DC%2BC3MXisFOkuw%3D%3D
-
Lu C, Mi LZ, Grey MJ, Zhu J, Graef E, Yokoyama S, Springer TA (2010) Structural evidence for loose linkage between ligand binding and kinase activation in the epidermal growth factor receptor. Mol Cell Biol 30:5432-5443
-
(2010)
Mol Cell Biol
, vol.30
, pp. 5432-5443
-
-
Lu, C.1
Mi, L.Z.2
Grey, M.J.3
Zhu, J.4
Graef, E.5
Yokoyama, S.6
Springer, T.A.7
-
10
-
-
27244461099
-
The extracellular region of ErbB4 adopts a tethered conformation in the absence of ligand
-
10.1073/pnas.0507591102 1:CAS:528:DC%2BD2MXhtFGqtb%2FP
-
Bouyain S, Longo PA, Li S, Ferguson KM, Leahy DJ (2005) The extracellular region of ErbB4 adopts a tethered conformation in the absence of ligand. Proc Natl Acad Sci USA 102:15024-15029
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15024-15029
-
-
Bouyain, S.1
Longo, P.A.2
Li, S.3
Ferguson, K.M.4
Leahy, D.J.5
-
11
-
-
67649472398
-
Novel anticancer targets: Revisiting ErbB2 and discovering ErbB3
-
1:CAS:528:DC%2BD1MXnsVagtbs%3D
-
Baselga J, Swain SM (2009) Novel anticancer targets: revisiting ErbB2 and discovering ErbB3. Nat Rev 9:463-475
-
(2009)
Nat Rev
, vol.9
, pp. 463-475
-
-
Baselga, J.1
Swain, S.M.2
-
12
-
-
10744230127
-
An open-and-shut case? Recent insights into the activation of EGF/ErbB receptors
-
10.1016/S1097-2765(03)00350-2 1:CAS:528:DC%2BD3sXnvFGrsbc%3D
-
Burgess AW, Cho HS, Eigenbrot C, Ferguson KM, Garrett TPJ, Leahy DJ, Lemmon MA, Sliwkowski MX, Ward CW, Yokoyama S (2003) An open-and-shut case? Recent insights into the activation of EGF/ErbB receptors. Mol Cell 12:541-552
-
(2003)
Mol Cell
, vol.12
, pp. 541-552
-
-
Burgess, A.W.1
Cho, H.S.2
Eigenbrot, C.3
Ferguson, K.M.4
Garrett, T.P.J.5
Leahy, D.J.6
Lemmon, M.A.7
Sliwkowski, M.X.8
Ward, C.W.9
Yokoyama, S.10
-
13
-
-
18344390418
-
ErbB receptors and cancer: The complexity of targeted inhibitors
-
10.1038/nrc1609 1:CAS:528:DC%2BD2MXjslertb0%3D
-
Hynes NE, Lane HA (2005) ErbB receptors and cancer: the complexity of targeted inhibitors. Nat Rev Cancer 5:341-354
-
(2005)
Nat Rev Cancer
, vol.5
, pp. 341-354
-
-
Hynes, N.E.1
Lane, H.A.2
-
14
-
-
79959752188
-
Size and conformational features of ErbB2 and ErbB3 receptors: A TEM and DLS comparative study
-
10.1007/s00249-011-0699-y 1:CAS:528:DC%2BC3MXnsVCgsrY%3D
-
Vicente-Alique E, Núñez-Ramírez R, Vega JF, Hu P, Martínez-Salazar J (2011) Size and conformational features of ErbB2 and ErbB3 receptors: a TEM and DLS comparative study. Eur Biophys J 40:835-842
-
(2011)
Eur Biophys J
, vol.40
, pp. 835-842
-
-
Vicente-Alique, E.1
Núñez-Ramírez, R.2
Vega, J.F.3
Hu, P.4
Martínez-Salazar, J.5
-
15
-
-
0023196582
-
ErbB-2 is a potent oncogene when overexpressed in NIH/3T3 cells
-
10.1126/science.2885917 1:CAS:528:DyaL2sXkslajtLc%3D
-
DiFiore PP, Pierce JH, Segatto O, King CR, Aaronson SA (1987) ErbB-2 is a potent oncogene when overexpressed in NIH/3T3 cells. Science 237:178-182
-
(1987)
Science
, vol.237
, pp. 178-182
-
-
Difiore, P.P.1
Pierce, J.H.2
Segatto, O.3
King, C.R.4
Aaronson, S.A.5
-
16
-
-
19044380618
-
Targeting ligand-activated ErbB2 signaling inhibits breast and prostate tumor growth
-
10.1016/S1535-6108(02)00097-1 1:CAS:528:DC%2BD38XmslSksL4%3D
-
Agus DB, Akita RW, Fox WD, Lewis GD, Higgins B, Pisacane PI, Lofgren JA, Tindell C, Evans DP, Maiese K, Scher HI, Sliwkowski MX (2002) Targeting ligand-activated ErbB2 signaling inhibits breast and prostate tumor growth. Cancer Cell 2:127-137
-
(2002)
Cancer Cell
, vol.2
, pp. 127-137
-
-
Agus, D.B.1
Akita, R.W.2
Fox, W.D.3
Lewis, G.D.4
Higgins, B.5
Pisacane, P.I.6
Lofgren, J.A.7
Tindell, C.8
Evans, D.P.9
Maiese, K.10
Scher, H.I.11
Sliwkowski, M.X.12
-
17
-
-
65349101151
-
Ligand-independent HER2/HER3/PI3K complex is disrupted by trastuzumab and is effectively inhibited by the PI3K inhibitor GDC-0941
-
10.1016/j.ccr.2009.03.020 1:CAS:528:DC%2BD1MXmvVGitrg%3D
-
Junttila TT, Akita RW, Parsons K, Fields C, Phillips GDL, Friedman LS, Sampath D, Sliwkowski MX (2009) Ligand-independent HER2/HER3/PI3K complex is disrupted by trastuzumab and is effectively inhibited by the PI3K inhibitor GDC-0941. Cancer Cell 15:429-440
-
(2009)
Cancer Cell
, vol.15
, pp. 429-440
-
-
Junttila, T.T.1
Akita, R.W.2
Parsons, K.3
Fields, C.4
Phillips, G.D.L.5
Friedman, L.S.6
Sampath, D.7
Sliwkowski, M.X.8
-
18
-
-
68949131106
-
Study of the inhibition effect of herceptin on interaction between heregulin and ErbB receptors HER2/HER3 by single-molecule force spectrsocopy
-
10.1016/j.yexcr.2009.05.023 1:CAS:528:DC%2BD1MXhtVentbrM
-
Shi X, Xu L, Yu J, Fang X (2009) Study of the inhibition effect of herceptin on interaction between heregulin and ErbB receptors HER2/HER3 by single-molecule force spectrsocopy. Exp Cell Res 315:2847-2855
-
(2009)
Exp Cell Res
, vol.315
, pp. 2847-2855
-
-
Shi, X.1
Xu, L.2
Yu, J.3
Fang, X.4
-
19
-
-
0030026580
-
Correlated motions and propagation of the effect of a local conformational change in the transmembrane helix of the c-ErbB2 encoded protein and in its V659E mutant, studied by molecular dynamics
-
10.1016/0301-4622(95)00106-9 1:CAS:528:DyaK28XhtVCisro%3D
-
Garnier N, Genest D, Genest M (1996) Correlated motions and propagation of the effect of a local conformational change in the transmembrane helix of the c-ErbB2 encoded protein and in its V659E mutant, studied by molecular dynamics. Biophys Chem 58:225-237
-
(1996)
Biophys Chem
, vol.58
, pp. 225-237
-
-
Garnier, N.1
Genest, D.2
Genest, M.3
-
20
-
-
20944445904
-
Transmembrane peptides from tyrosine kinase receptor. Mutation-related behavior in a lipid bilayer investigated by molecular dynamics simulations
-
10.1080/07391102.2005.10507050
-
Samma Soumana O, Aller P, Garnier N, Genest M (2005) Transmembrane peptides from tyrosine kinase receptor. Mutation-related behavior in a lipid bilayer investigated by molecular dynamics simulations. J Biomol Struct Dyn 23:91-100
-
(2005)
J Biomol Struct Dyn
, vol.23
, pp. 91-100
-
-
Samma Soumana, O.1
Aller, P.2
Garnier, N.3
Genest, M.4
-
21
-
-
0029960813
-
Detailed description of an alpha helix->pi bulge transition detected by molecular dynamics simulations of the p185(c-ErbB2) V659G transmembrane domain
-
10.1080/07391102.1996.10508889 1:CAS:528:DyaK28XislylsLw%3D
-
Duneau JP, Genest D, Genest M (1996) Detailed description of an alpha helix->pi bulge transition detected by molecular dynamics simulations of the p185(c-ErbB2) V659G transmembrane domain. J Biomol Struc Dyn 13:753-769
-
(1996)
J Biomol Struc Dyn
, vol.13
, pp. 753-769
-
-
Duneau, J.P.1
Genest, D.2
Genest, M.3
-
22
-
-
0141789813
-
Molecular dynamics simulations of the transmembrane domain of the oncogenic ErbB2 receptor dimer in a DMPC bilayer
-
10.1080/07391102.2003.10506916 1:CAS:528:DC%2BD3sXnvFOks7c%3D
-
Garnier N, Crouzy S, Genest M (2003) Molecular dynamics simulations of the transmembrane domain of the oncogenic ErbB2 receptor dimer in a DMPC bilayer. J Biomol Struc Dyn 21:179-199
-
(2003)
J Biomol Struc Dyn
, vol.21
, pp. 179-199
-
-
Garnier, N.1
Crouzy, S.2
Genest, M.3
-
23
-
-
45849099461
-
Insight into the recognition patterns of the ErbB receptor family transmembrane domains: Heterodimerization models through molecular dynamics search
-
10.1007/s00249-008-0293-0
-
Samma Soumana O, Garnier N, Genest M (2008) Insight into the recognition patterns of the ErbB receptor family transmembrane domains: heterodimerization models through molecular dynamics search. Eur Biophys J 37:851-864
-
(2008)
Eur Biophys J
, vol.37
, pp. 851-864
-
-
Samma Soumana, O.1
Garnier, N.2
Genest, M.3
-
24
-
-
43749091771
-
Spatial structure of the dimeric transmembrane domain of the growth factor receptor ErbB2 presumably corresponding to the receptor active state
-
10.1074/jbc.M709202200 1:CAS:528:DC%2BD1cXivFyjt7c%3D
-
Bocharov EV, Mineev KS, Volynsky PE, Ermolyuk YS, Tkach EN, Sobol AG, Chupin VV, Kirpichnikov MP, Efremov RG, Arseniev AS (2008) Spatial structure of the dimeric transmembrane domain of the growth factor receptor ErbB2 presumably corresponding to the receptor active state. J Biol Chem 283:6950-6956
-
(2008)
J Biol Chem
, vol.283
, pp. 6950-6956
-
-
Bocharov, E.V.1
Mineev, K.S.2
Volynsky, P.E.3
Ermolyuk, Y.S.4
Tkach, E.N.5
Sobol, A.G.6
Chupin, V.V.7
Kirpichnikov, M.P.8
Efremov, R.G.9
Arseniev, A.S.10
-
25
-
-
66149084032
-
Atomistic insights into regulatory mechanisms of the HER2 tyrosine Kinase domain: A molecular dynamics study
-
10.1016/j.bpj.2008.12.3912
-
Telesco SE, Radhakrishnan R (2008) Atomistic insights into regulatory mechanisms of the HER2 tyrosine Kinase domain: a molecular dynamics study. Biophys J 96:2321-2334
-
(2008)
Biophys J
, vol.96
, pp. 2321-2334
-
-
Telesco, S.E.1
Radhakrishnan, R.2
-
26
-
-
79953726111
-
Molecular dynamics analysis of conserved hydrophobic and hydrophilic bond-interaction networks in ErbB family kinases
-
10.1042/BJ20101791 1:CAS:528:DC%2BC3MXmtFGisbs%3D
-
Shih AJ, Telesco SE, Cho SH, Lemmon MA, Radhakrishnan R (2011) Molecular dynamics analysis of conserved hydrophobic and hydrophilic bond-interaction networks in ErbB family kinases. Biochem J 436:241-251
-
(2011)
Biochem J
, vol.436
, pp. 241-251
-
-
Shih, A.J.1
Telesco, S.E.2
Cho, S.H.3
Lemmon, M.A.4
Radhakrishnan, R.5
-
27
-
-
79956098237
-
A multiscale modeling approach to investigate molecular mechanisms of pseudokinase activation and drug resistance in the HER3/ErbB3 receptor tyrosine kinase signaling network
-
10.1039/c0mb00345j 1:CAS:528:DC%2BC3MXmtV2isL0%3D
-
Telesco SE, Shih AJ, Jia F, Radhakrishnan R (2011) A multiscale modeling approach to investigate molecular mechanisms of pseudokinase activation and drug resistance in the HER3/ErbB3 receptor tyrosine kinase signaling network. Mol Biosyst 7:2066-2080
-
(2011)
Mol Biosyst
, vol.7
, pp. 2066-2080
-
-
Telesco, S.E.1
Shih, A.J.2
Jia, F.3
Radhakrishnan, R.4
-
28
-
-
0347285239
-
Structural analysis of the epitopes on ErbB2 interacted with inhibitory or non-inhibitory monoclonal antibodies
-
10.1016/j.molimm.2003.09.012
-
Wang JN, Feng JN, Yu M, Xu M, Shi M, Zhou T, Yu XD, Shen BF, Guo N (2003) Structural analysis of the epitopes on ErbB2 interacted with inhibitory or non-inhibitory monoclonal antibodies. Mol Immunol 40:963-969
-
(2003)
Mol Immunol
, vol.40
, pp. 963-969
-
-
Wang, J.N.1
Feng, J.N.2
Yu, M.3
Xu, M.4
Shi, M.5
Zhou, T.6
Yu, X.D.7
Shen, B.F.8
Guo, N.9
-
29
-
-
27744472328
-
In vivo identification of the interaction site of ErbB2 extracellular domain with its autoinhibitor
-
10.1002/jcp.20409 1:CAS:528:DC%2BD2MXht1Shtr7I
-
Hu P, Feng J, Zhou T, Wang J, Jing B, Yu M, Hu M, Zhang X, Shen B, Guo N (2005) In vivo identification of the interaction site of ErbB2 extracellular domain with its autoinhibitor. J Cell Physiol 205:335-343
-
(2005)
J Cell Physiol
, vol.205
, pp. 335-343
-
-
Hu, P.1
Feng, J.2
Zhou, T.3
Wang, J.4
Jing, B.5
Yu, M.6
Hu, M.7
Zhang, X.8
Shen, B.9
Guo, N.10
-
30
-
-
84860390489
-
Synergy between trastuzumab and pertuzumab for human epidermal growth factor 2 (Her2) from colocalization: An in silico based mechanism
-
10.1186/bcr2888
-
Fuentes G, Scaltriti M, Baselga J, Verma CS (2011) Synergy between trastuzumab and pertuzumab for human epidermal growth factor 2 (Her2) from colocalization: an in silico based mechanism. Breast Cancer Res 13:1-9
-
(2011)
Breast Cancer Res
, vol.13
, pp. 1-9
-
-
Fuentes, G.1
Scaltriti, M.2
Baselga, J.3
Verma, C.S.4
-
31
-
-
84870828756
-
-
SYBYL 8.0 1699 South Hanley Rd., St. Louis, MO, 63144, USA
-
SYBYL 8.0, Tripos International, 1699 South Hanley Rd., St. Louis, MO, 63144, USA
-
Tripos International
-
-
-
33
-
-
46249092554
-
Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
GROMACS 4 10.1021/ct700301q 1:CAS:528:DC%2BD1cXhsVSqurc%3D
-
Hess B, Kutzner C, van der Spoel D, Lindahl E, GROMACS 4 (2008) Algorithms for highly efficient, load-balanced, and scalable molecular simulation. J Chem Theory Comp 4:435-447
-
(2008)
J Chem Theory Comp
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
34
-
-
33645941402
-
The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
-
10.1021/ja00214a001 1:CAS:528:DyaL1cXht1yjt7Y%3D
-
Jorgensen WL, Tirado-Rives J (1988) The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin. J Am Chem Soc 110:1657-1666
-
(1988)
J Am Chem Soc
, vol.110
, pp. 1657-1666
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
35
-
-
18744387415
-
Chemical theory and computation special feature: Potential energy functions for atomic-level simulations of water and organic and biomolecular systems
-
10.1073/pnas.0408037102 1:CAS:528:DC%2BD2MXksVKgt7s%3D
-
Jorgensen WL, Tirado-Rives J (2005) Chemical theory and computation special feature: potential energy functions for atomic-level simulations of water and organic and biomolecular systems. J Proc Natl Acad Sci USA 102:6665-6670
-
(2005)
J Proc Natl Acad Sci USA
, vol.102
, pp. 6665-6670
-
-
Jorgensen, W.L.1
Tirado-Rives, J.2
-
36
-
-
0035913529
-
Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
-
10.1021/jp003919d 1:CAS:528:DC%2BD3MXislKhsLk%3D
-
Kaminski GA, Friesner RA, Tirado-Rives J, Jorgensen WL (2001) Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides. J Phys Chem B 105:6474-6487
-
(2001)
J Phys Chem B
, vol.105
, pp. 6474-6487
-
-
Kaminski, G.A.1
Friesner, R.A.2
Tirado-Rives, J.3
Jorgensen, W.L.4
-
37
-
-
0002775934
-
-
B. Pullman (eds) Reidel Dordrecht, The Netherlands
-
Berendsen HJC, Postma JPM, van Gunsteren WF, Hermans J (1981) In: Pullman B (ed) Intermolecular forces. Reidel, Dordrecht, The Netherlands, pp 331-342
-
(1981)
Intermolecular Forces
, pp. 331-342
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Hermans, J.4
-
38
-
-
33846823909
-
Particle mesh Ewald: An N×log(N) method for Ewald sums in large systems
-
10.1063/1.464397 1:CAS:528:DyaK3sXks1Ohsr0%3D
-
Darden T, York D, Pedersen L (1993) Particle mesh Ewald: An N×log(N) method for Ewald sums in large systems. J Chem Phys 98:10089-10092
-
(1993)
J Chem Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
39
-
-
33645961739
-
A smooth particle mesh Ewald method
-
10.1063/1.470117 1:CAS:528:DyaK2MXptlehtrw%3D
-
Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG (1995) A smooth particle mesh Ewald method. J Chem Phys 103:8577-8593
-
(1995)
J Chem Phys
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
40
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
10.1063/1.448118 1:CAS:528:DyaL2cXmtlGksbY%3D
-
Berendsen HJC, Postma JPM, Vangunsteren WF, Dinola A, Haak JR (1984) Molecular dynamics with coupling to an external bath. J Chem Phys 81:3684-3690
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Vangunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
41
-
-
0000388705
-
A linear constraint solver for molecular simulations
-
LINCS 10.1002/(SICI)1096-987X(199709)18:12<1463: AID-JCC4>3.0.CO;2- H 1:CAS:528:DyaK2sXlvV2nu7g%3D
-
Hess B, Bekker H, Berendsen HJC, Fraaije J, LINCS (1997) A linear constraint solver for molecular simulations. J Comput Chem 18:1463-1472
-
(1997)
J Comput Chem
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.4
-
42
-
-
0029878720
-
Visual molecular dynamics
-
VMD 10.1016/0263-7855(96)00018-5 1:CAS:528:DyaK28Xis12nsrg%3D
-
Humphrey W, Dalke A, Schulten K, VMD (1996) Visual molecular dynamics. J Mol Graphics 14:33-38
-
(1996)
J Mol Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
43
-
-
0027441950
-
Essential dynamics of proteins
-
10.1002/prot.340170408 1:CAS:528:DyaK2cXis1Ghsbc%3D
-
Amadei A, Linssen AB, Berendsen HJ (1993) Essential dynamics of proteins. Proteins 17:412-425
-
(1993)
Proteins
, vol.17
, pp. 412-425
-
-
Amadei, A.1
Linssen, A.B.2
Berendsen, H.J.3
-
44
-
-
0029985860
-
An efficient method for sampling the essential subspace of proteins
-
10.1080/07391102.1996.10508874 1:CAS:528:DyaK28XhtlGhtrk%3D
-
Amadei A, Linssen AB, de Groot BL, van Aalten DM, Berendsen HJ (1996) An efficient method for sampling the essential subspace of proteins. J Biomol Struct Dyn 13:615-625
-
(1996)
J Biomol Struct Dyn
, vol.13
, pp. 615-625
-
-
Amadei, A.1
Linssen, A.B.2
De Groot, B.L.3
Van Aalten, D.M.4
Berendsen, H.J.5
-
45
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
10.1002/bip.360221211 1:CAS:528:DyaL2cXkslegtQ%3D%3D
-
Kabsch W, Sander C (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
46
-
-
33746565283
-
Molecular dynamics of apo-adenylate kinase. A principal component analysis
-
Lou H, Cukier RI (2006) Molecular dynamics of apo-adenylate kinase. A principal component analysis J. Phys. Chem B 110: 12796-12808
-
(2006)
J. Phys. Chem B
, vol.110
, pp. 12796-12808
-
-
Lou, H.1
Cukier, R.I.2
-
47
-
-
0029092698
-
Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular-dynamics simulations
-
10.1006/jmbi.1995.0514 1:STN:280:DyaK28%2FisFSrsQ%3D%3D
-
Hunenberger PH, Mark AE, Van Gunsteren WF (1995) Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular-dynamics simulations. J Mol Biol 252:492-503
-
(1995)
J Mol Biol
, vol.252
, pp. 492-503
-
-
Hunenberger, P.H.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
48
-
-
84976998771
-
The application of electronic-computers to factor-analysis
-
10.1177/001316446002000116
-
Kaiser HF (1960) The application of electronic-computers to factor-analysis. Educ Psychol Meas 20:141-151
-
(1960)
Educ Psychol Meas
, vol.20
, pp. 141-151
-
-
Kaiser, H.F.1
-
49
-
-
23144462926
-
SPACE: A suite of tools for protein structure prediction and analysis based on complementarity and environment
-
10.1093/nar/gki398 1:CAS:528:DC%2BD2MXlslyru78%3D
-
Sobolev V, Eyal E, Gerzon S, Potapov V, Babor M, Prilusky J, Edelman M (2005) SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment. Nucl Acids Res 33:W39-W43
-
(2005)
Nucl Acids Res
, vol.33
-
-
Sobolev, V.1
Eyal, E.2
Gerzon, S.3
Potapov, V.4
Babor, M.5
Prilusky, J.6
Edelman, M.7
-
50
-
-
52449095375
-
Differential binding of human immunoagents and Herceptin to the ErbB2 receptor
-
10.1111/j.1742-4658.2008.06625.x 1:CAS:528:DC%2BD1cXht1OlsrjP
-
Troise F, Cafaro V, Giancola C, D'Alessio G, Lorenzo C (2008) Differential binding of human immunoagents and Herceptin to the ErbB2 receptor. FEBS J 275:4967-4979
-
(2008)
FEBS J
, vol.275
, pp. 4967-4979
-
-
Troise, F.1
Cafaro, V.2
Giancola, C.3
D'Alessio, G.4
Lorenzo, C.5
-
51
-
-
79955545620
-
High affinity antigen recognition of the dual specific variants of herceptin is entropy-driven in spite of structural plasticity
-
10.1371/journal.pone.0017887 1:CAS:528:DC%2BC3MXlsVans74%3D
-
Bostrom J, Haber L, Koenig P, Kelley RF, Fuh G (2011) High affinity antigen recognition of the dual specific variants of herceptin is entropy-driven in spite of structural plasticity. PLOS 6(4):e17887
-
(2011)
PLOS
, vol.6
, Issue.4
, pp. 17887
-
-
Bostrom, J.1
Haber, L.2
Koenig, P.3
Kelley, R.F.4
Fuh, G.5
|