Detailed description of an a helix → π bulge transition detected by molecular dynamics simulations of the p 185c-erbB2 V659G Transmembrane Domain

Journal of Biomolecular Structure and Dynamics

Volumn 13, Issue 5, 1996, Pages 753-769

  Duneau, Jean Pierre ^a   Genest, Daniel ^a   Genest, Monique ^a  

^a CENTRE DE BIOPHYSIQUE MOLÉCULAIRE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN; MUTANT PROTEIN;

ALPHA CHAIN; ARTICLE; DIMERIZATION; HYDROGEN BOND; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN;

AMINO ACID SEQUENCE; CELL MEMBRANE; COMPUTER SIMULATION; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION; PEPTIDES; PROTEIN STRUCTURE, SECONDARY; RECEPTOR, ERBB-2;

EID: 0029960813     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1996.10508889     Document Type: Article

References (61)

1. Bresler, S. E., 1958. Discuss. Faraday. Soc., 25:158
2. Singer, S. J., 1962. Adv. Protein Chem., 17:1
3. Lenard, J., and Singer, S. J., 1966. Proc. Nalt. Acad. Sci. USA, 56:1828
4. Segrest, J. P., Kahane, I., Jackson, R. L., and Marchesi, V. T., 1973. Archs Biochem. Biophys., 155:167
5. Popot, J. L., and De Vitry, C., 1990. Annu. Rev. Biophys. Biophys. Chem., 19:369
6. Li, S., and Deber, C. M., 1992. FEBS Lett., 311:217
7. Li, S., and Deber, C. M., 1992. Int. J. Peptide Protein Res., 40:243
8. Zhong, L., and Johnson, W. C., Jr. 1992. Proc. Nalt. Acad. Sci USA, 89:4462
9. Li, S., and Deber, C. M., 1993. J. Biol. Chem., 268:22975
10. Li, S., and Deber, C. M., 1994. Struc. Biol., 1:368
11. Yamamoto, T., Ikawa, S., Akiyama, T., Semba, K., Nomura, N., Miyajima, N., Saito, T., and Toyoshima, K., 1986. Nature, 319:230
12. Segatto, O., King, C. R., Pierce, J. H., Di Fiore, P. P., and Aaronson, S. A., 1988. Mol. Cell. Biol., 8:5570
13. Peles, E., and Yarden, Y., 1993. Bioessays, 15:815
14. Cao, H., Bangalore, L., Bormann, B. J., and Stern, D. F., 1992. EMBO J., 11:923
15. Ullrich, A., and Schlessinger, J., 1990. Cell, 61:203
16. Samanta, A., Levea, C. M., Dougall, W. C., Qian, X., and Greene, M. I., 1994. Proc. Natl. Acad. Sci. USA, 91:1711
17. Weiner, D. B., Liu, J., Cohen, J. A., Williams, W. V., and Greene, M. I., 1989. Nature, 339:230
18. Sternberg, M. J.E., and Gullick, W. J., 1989. Nature, 339:587
19. Akiyama, T., Matsuda, S., Namba, Y., Saito, T., Toyoshima, K., and Yamamoto, T., 1991. Mol. Cell. Biol., 11:883
20. Sternberg, M. J.E., and Gullick, W. J., 1990. Prot. Engineering, 3:245
21. Brandt, Rauf, P. W., Pincus, M. R., and Chen, J. M., 1989. J. Protein. Chem., 6:749
22. Brandt, Rauf, P. W., Rackovsky, S., and Pincus, M. R., 1990. Proc. Natl. Acad. Sci. USA, 87:8660
23. Gamier, N., Genest, D., Hebert, E., and Genest, M., 1994. J. Biomol. Struct & Dyn., 11:983
24. Bargmann, C. I., and Weinberg, R. A. 1988. EMBO J., 7:2043
25. Kavanaught, J. S., Moon Penn, W. F., and Armone, A., 1993. Biochemistry, 32:2509
26. 1699. TRIPOS Associates, Inc., South Hanley Road, Suite 303, St. Louis, Missouri
27. Dunbrack, R. L., Jr and Karplus, M., 1993. J. Mol. Biol., 230:543
28. van Gunsteren, W. F., 1987. GROMOS, Groningen Molecular Simulation System BIOMOS Biomolecular Software b.v. Groningen
29. Ryckaert, J. P., Ciccotti, G., and Berendsen, H. J., 1977. C., J. Comput. Phys., 23:327
30. Berendsen, H. J.C., Postma, J. P.M., van Gunsteren, W. F., DiNola, A., and Haak, J. R., 1984. J. Chem. Phys., 81:3684
31. Kabch, W., and Sander, C., 1983. Biopolymers, 22:2577
32. Ramachandran, G. N., Ramakrishnan, C., and Sasisekharan, V., 1963. J. Mol. Biol., 7:95
33. Lemon, M. A., and Engelman, D. M., 1994. Quaterly Reviews of Biophysics, 27:157
34. Goncalves, E., Yamada, K., Thatte, H. S., Backer, J. M., Golan, D. E., Kahn, C. R., and Shoelson, S. E., 1993. Proc. Nalt. Acad. Sci. USA, 90:5762
35. Deber, C. M., Khan, A. R., Li, Z., Joensson, C., Glibowicka, M., and Wang, J., 1993. Proc. Nalt. Acad. Sci. USA, 90:11648
36. Li, Z., Glibowicka, M., Joensson, C., and Deber, C. M., 1993. J. Biol. Chem., 268:4584
37. Gullick, W. J., Bottomley, A. C., Lofts, F. J., Doak, D. G., Newman, R., Crumpton, M. J., Sternberg, M. J.E., and Campbell, I. D., 1992. EMBO J., 11:43
38. Treutlein, H. R., Lemmon, M. A., Engelman, D. M., and Brunger, A. T., 1992. Biochemistry, 31:12726
39. Polinsky, A., Goodman, M., Williams, K. A., and Deber, C. M., 1992. Biopolymers, 32:399
40. Israelachvili, J. N., Marcelja, S., and Horn, R. G., 1980. Quaterly Review of Biophysics, 13:121
41. Vogel, H., 1992. Quaterly Review of Biophysics, 25:433
42. Brooks, C. L., III, Karplus, M., and Pettitt, B. M., 1988. Proteins:a theoretical perspective of dynamics, structure, and thermodynamics. John Wiley & Sons.
43. Low, B. W., Grenville and Wells, H. J., 1953. Proc. Nalt. Acad. Sci. USA, 39:785
44. Scellman, J. A., and Scellman, C., 1963. The proteins composition structure and functions Vol. II New York:Neurath Acad. Press. Second Edition
45. Vainshtein, B. K., Melik Adamyan, W. R., Barynin, V. V., Vagin, A. A., Grebenko, A. I., Borisov, V. V., Bartels, K. S., Fita, I., and Rossmann, M. G., 1986. J. Mol. Biol., 188:49
46. Keefe, L. J., Sondek, J., Shortle, D., and Lattman, E. E., 1993. Proc. Nalt. Acad. Sci. USA, 90:3275
47. Bernstein, F. C., Koetzle, T. F., Williams, G. J., Meyer, E. E., Brice, M. D., Rodgers, J. D., Kennard, O., Shimanouchi, T., and Tsamuni, M., 1977. J. Mol. Biol., 112:535
48. Heinz, D. W., Baase, W. A., Dahlquist, F. W., and Matthews, B. W., 1993. Nature, 361:561
49. Heinz, D. W., Baase, W. A., Zhang, W. J., Blader, M., Dahlquist, F. W., and Matthews, B. W., 1994. J. Mol. Biol., 236:869
50. Åberg, A., Nordlund, P., and Eklund, H., 1993. Nature, 361:276
51. Nordlund, P., Sjöberg, B. M., and Eklund, H., 1990. Nature, 276:593
52. Schiering, N., Kabsch, W., Moore, M. J., Distefano, M. D., Walsh, C. T., and Pai, E. F., 1991. Nature, 352:168
53. Landolt-Marticorena, C., Williams, K. A., Deber, C. M., and Reithmeier, R. A.F., 1993. J. Mol. Biol., 229:602
54. Deber, C. M., Li, Z., Joensson, C., Glibowicka, M., and Xu, G., 1992. J. Biol. Chem., 267:5296
55. Fiori, W. R., Lundberg, K. M., and Millhauser, G. L., 1994. Struct. Biol., 1:374
56. Huyghues-Despointes, B. M.P., and Scholtz, J. M., 1993. Protein Science, 2:1604
57. Manning, M. C., and Woody, R. W., 1991. Biopolymers, 31:569
58. Sondek, J., and Shortle, D., 1990. Proteins, 7:299
59. Sondek, J., and Shortle, D., 1992. Proteins, 13:132
60. Kim, S. H., 1994. Protein Sci, 3:159
61. Maruyama, I. N., Mikawa, Y. G., and Maruyama, H. I., 1995. J. Mol. Biol, 253:530