-
2
-
-
0032853634
-
Evolutionary aspects of recombination in RNA viruses
-
Worobey M, Holmes EC, (1999) Evolutionary aspects of recombination in RNA viruses. J Gen Virol 80: 2535-2543.
-
(1999)
J Gen Virol
, vol.80
, pp. 2535-2543
-
-
Worobey, M.1
Holmes, E.C.2
-
3
-
-
79951520544
-
The evolutionary genetics of emerging plant RNA viruses
-
Elena SF, Bedhomme S, Carrasco P, Cuevas JM, de la Iglesia F, et al. (2011) The evolutionary genetics of emerging plant RNA viruses. Mol Plant Microbe Interact 24: 287-293.
-
(2011)
Mol Plant Microbe Interact
, vol.24
, pp. 287-293
-
-
Elena, S.F.1
Bedhomme, S.2
Carrasco, P.3
Cuevas, J.M.4
de la Iglesia, F.5
-
4
-
-
63949084990
-
Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control
-
Jones RA, (2009) Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control. Virus Res 141: 113-130.
-
(2009)
Virus Res
, vol.141
, pp. 113-130
-
-
Jones, R.A.1
-
6
-
-
43449108426
-
An overlapping essential gene in the Potyviridae
-
Chung BY, Miller WA, Atkins JF, Firth AE, (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105: 5897-5902.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 5897-5902
-
-
Chung, B.Y.1
Miller, W.A.2
Atkins, J.F.3
Firth, A.E.4
-
7
-
-
0032233760
-
Molecular cloning, sequencing, and phylogenetic relationships of a new potyvirus: Sugarcane streak mosaic virus, and a reevaluation of the classification of the Potyviridae
-
Hall JS, Adams B, Parsons TJ, French R, Lane LC, et al. (1998) Molecular cloning, sequencing, and phylogenetic relationships of a new potyvirus: Sugarcane streak mosaic virus, and a reevaluation of the classification of the Potyviridae. Mol Phylogenet Evol 10: 323-332.
-
(1998)
Mol Phylogenet Evol
, vol.10
, pp. 323-332
-
-
Hall, J.S.1
Adams, B.2
Parsons, T.J.3
French, R.4
Lane, L.C.5
-
8
-
-
0036788142
-
Evidence for diversifying selection in Potato virus Y and in the coat protein of other potyviruses
-
Moury B, Morel C, Johansen E, Jacquemond M, (2002) Evidence for diversifying selection in Potato virus Y and in the coat protein of other potyviruses. J Gen Virol 83: 2563-2573.
-
(2002)
J Gen Virol
, vol.83
, pp. 2563-2573
-
-
Moury, B.1
Morel, C.2
Johansen, E.3
Jacquemond, M.4
-
9
-
-
38349119975
-
Discussion paper: The naming of Potato virus Y strains infecting potato
-
Singh RP, Valkonen JP, Gray SM, Boonham N, Jones RA, et al. (2008) Discussion paper: The naming of Potato virus Y strains infecting potato. Arch Virol 153: 1-13.
-
(2008)
Arch Virol
, vol.153
, pp. 1-13
-
-
Singh, R.P.1
Valkonen, J.P.2
Gray, S.M.3
Boonham, N.4
Jones, R.A.5
-
10
-
-
0036008465
-
Genomic variability in Potato potyvirus Y (PVY): evidence that PVY(N)W and PVY(NTN) variants are single to multiple recombinants between PVY(O) and PVY(N) isolates
-
Glais L, Tribodet M, Kerlan C, (2002) Genomic variability in Potato potyvirus Y (PVY): evidence that PVY(N)W and PVY(NTN) variants are single to multiple recombinants between PVY(O) and PVY(N) isolates. Arch Virol 147: 363-378.
-
(2002)
Arch Virol
, vol.147
, pp. 363-378
-
-
Glais, L.1
Tribodet, M.2
Kerlan, C.3
-
11
-
-
39749095380
-
NE-11 represents a new strain variant class of Potato virus Y
-
Lorenzen J, Nolte P, Martin D, Pasche JS, Gudmestad NC, (2008) NE-11 represents a new strain variant class of Potato virus Y. Arch Virol 153: 517-525.
-
(2008)
Arch Virol
, vol.153
, pp. 517-525
-
-
Lorenzen, J.1
Nolte, P.2
Martin, D.3
Pasche, J.S.4
Gudmestad, N.C.5
-
12
-
-
33846782928
-
Differentiation of Potato virus Y strains using improved sets of diagnostic PCR-primers
-
Schubert J, Fomitcheva V, Sztangret-Wisniewska J, (2007) Differentiation of Potato virus Y strains using improved sets of diagnostic PCR-primers. J Virol Methods 140: 66-74.
-
(2007)
J Virol Methods
, vol.140
, pp. 66-74
-
-
Schubert, J.1
Fomitcheva, V.2
Sztangret-Wisniewska, J.3
-
13
-
-
33645972304
-
A phylogenetic survey of recombination frequency in plant RNA viruses
-
Chare ER, Holmes EC, (2006) A phylogenetic survey of recombination frequency in plant RNA viruses. Arch Virol 151: 933-946.
-
(2006)
Arch Virol
, vol.151
, pp. 933-946
-
-
Chare, E.R.1
Holmes, E.C.2
-
14
-
-
38649128454
-
Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations
-
Ogawa T, Tomitaka Y, Nakagawa A, Ohshima K, (2008) Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations. Virus Res 131: 199-212.
-
(2008)
Virus Res
, vol.131
, pp. 199-212
-
-
Ogawa, T.1
Tomitaka, Y.2
Nakagawa, A.3
Ohshima, K.4
-
15
-
-
77957319780
-
Biological and molecular characterization of a recombinant isolate of Potato virus Y associated with a tomato necrotic disease ocurring in Italy
-
Mascia T, Finetti-Sialer MM, Cillo F, Gallitelli D, (2010) Biological and molecular characterization of a recombinant isolate of Potato virus Y associated with a tomato necrotic disease ocurring in Italy. Journal of Plant Pathology 92: 131-138.
-
(2010)
Journal of Plant Pathology
, vol.92
, pp. 131-138
-
-
Mascia, T.1
Finetti-Sialer, M.M.2
Cillo, F.3
Gallitelli, D.4
-
16
-
-
77957243284
-
RDP3: a flexible and fast computer program for analyzing recombination
-
Martin DP, Lemey P, Lott M, Moulton V, Posada D, et al. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26: 2462-2463.
-
(2010)
Bioinformatics
, vol.26
, pp. 2462-2463
-
-
Martin, D.P.1
Lemey, P.2
Lott, M.3
Moulton, V.4
Posada, D.5
-
17
-
-
70349579112
-
Molecular characterization and detection of recombinant isolates of Potato virus Y from China
-
Hu X, He C, Xiao Y, Xiong X, Nie X, (2009) Molecular characterization and detection of recombinant isolates of Potato virus Y from China. Arch Virol 154: 1303-1312.
-
(2009)
Arch Virol
, vol.154
, pp. 1303-1312
-
-
Hu, X.1
He, C.2
Xiao, Y.3
Xiong, X.4
Nie, X.5
-
18
-
-
74249099223
-
PVYNTN-NW, a novel recombinant strain of Potato virus Y predominating in potato fields in Syria
-
Ali MC, Maoka T, Natsuaki T, Natsuaki KT, (2010) PVYNTN-NW, a novel recombinant strain of Potato virus Y predominating in potato fields in Syria. Plant Pathol 59: 31-41.
-
(2010)
Plant Pathol
, vol.59
, pp. 31-41
-
-
Ali, M.C.1
Maoka, T.2
Natsuaki, T.3
Natsuaki, K.T.4
-
19
-
-
79952243958
-
Complete nucleotide sequence of a potato isolate of strain group C of Potato virus Y from 1938
-
Dullemans AM, Cuperus C, Verbeek M, van der Vlugt RA, (2011) Complete nucleotide sequence of a potato isolate of strain group C of Potato virus Y from 1938. Arch Virol 156: 473-477.
-
(2011)
Arch Virol
, vol.156
, pp. 473-477
-
-
Dullemans, A.M.1
Cuperus, C.2
Verbeek, M.3
van der Vlugt, R.A.4
-
20
-
-
17644409447
-
Characterisation of Potato virus Y nnp strain inducing veinal necrosis in pepper: a naturally occurring recombinant strain of PVY
-
Fanigliulo A, Comes S, Pacella R, Harrach B, Martin DP, et al. (2005) Characterisation of Potato virus Y nnp strain inducing veinal necrosis in pepper: a naturally occurring recombinant strain of PVY. Arch Virol 150: 709-720.
-
(2005)
Arch Virol
, vol.150
, pp. 709-720
-
-
Fanigliulo, A.1
Comes, S.2
Pacella, R.3
Harrach, B.4
Martin, D.P.5
-
21
-
-
0036114428
-
The Potato virus Y M(S)N(R) NIb-replicase is the elicitor of a veinal necrosis-hypersensitive response in root knot nematode resistant tobacco
-
Fellers JP, Tremblay D, Handest MF, Lommel SA, (2002) The Potato virus Y M(S)N(R) NIb-replicase is the elicitor of a veinal necrosis-hypersensitive response in root knot nematode resistant tobacco. Mol Plant Pathol 3: 145-152.
-
(2002)
Mol Plant Pathol
, vol.3
, pp. 145-152
-
-
Fellers, J.P.1
Tremblay, D.2
Handest, M.F.3
Lommel, S.A.4
-
22
-
-
0032811052
-
Rearrangements in the 5′ nontranslated region and phylogenetic analyses of Cucumber mosaic virus RNA 3 indicate radial evolution of three subgroups
-
Roossinck MJ, Zhang L, Hellwald KH, (1999) Rearrangements in the 5′ nontranslated region and phylogenetic analyses of Cucumber mosaic virus RNA 3 indicate radial evolution of three subgroups. J Virol 73: 6752-6758.
-
(1999)
J Virol
, vol.73
, pp. 6752-6758
-
-
Roossinck, M.J.1
Zhang, L.2
Hellwald, K.H.3
-
23
-
-
33644920668
-
Genetic structure of the population of Pepino mosaic virus infecting tomato crops in Spain
-
Pagán I, Córdoba-Sellés MdelC, Martínez-Priego L, Fraile A, Malpica JM, et al. (2006) Genetic structure of the population of Pepino mosaic virus infecting tomato crops in Spain. Phytopathology 96: 274-279.
-
(2006)
Phytopathology
, vol.96
, pp. 274-279
-
-
Pagán, I.1
del Córdoba-Sellés, M.C.2
Martínez-Priego, L.3
Fraile, A.4
Malpica, J.M.5
-
24
-
-
33751017417
-
A phylogeographical study of the Turnip mosaic virus population in East Asia reveals an 'emergent' lineage in Japan
-
Tomitaka Y, Ohshima K, (2006) A phylogeographical study of the Turnip mosaic virus population in East Asia reveals an 'emergent' lineage in Japan. Mol Ecol 15: 4437-4457.
-
(2006)
Mol Ecol
, vol.15
, pp. 4437-4457
-
-
Tomitaka, Y.1
Ohshima, K.2
-
25
-
-
76349119250
-
An assessment of molecular variability and recombination patterns in South African isolates of Potato virus Y
-
Visser JC, Bellstedt DU, (2009) An assessment of molecular variability and recombination patterns in South African isolates of Potato virus Y. Arch Virol 154: 1891-1900.
-
(2009)
Arch Virol
, vol.154
, pp. 1891-1900
-
-
Visser, J.C.1
Bellstedt, D.U.2
-
26
-
-
73649100637
-
A new lineage sheds light on the evolutionary history of Potato virus Y
-
Moury B, (2010) A new lineage sheds light on the evolutionary history of Potato virus Y. Mol Plant Pathol 11: 161-168.
-
(2010)
Mol Plant Pathol
, vol.11
, pp. 161-168
-
-
Moury, B.1
-
27
-
-
42649136257
-
Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty
-
Parker J, Rambaut A, Pybus OG, (2008) Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. Infect Genet Evol 8: 239-246.
-
(2008)
Infect Genet Evol
, vol.8
, pp. 239-246
-
-
Parker, J.1
Rambaut, A.2
Pybus, O.G.3
-
28
-
-
34547684600
-
Evidence for a founder effect after introduction of Tomato yellow leaf curl virus-mild in an insular environment
-
Delatte H, Holota H, Moury B, Reynaud B, Lett JM, et al. (2007) Evidence for a founder effect after introduction of Tomato yellow leaf curl virus-mild in an insular environment. J Mol Evol 65: 112-118.
-
(2007)
J Mol Evol
, vol.65
, pp. 112-118
-
-
Delatte, H.1
Holota, H.2
Moury, B.3
Reynaud, B.4
Lett, J.M.5
-
29
-
-
33745611774
-
Adaptation to different human populations by HIV-1 revealed by codon-based analyses
-
Pond SL, Frost SD, Grossman Z, Gravenor MB, Richman DD, et al. (2006) Adaptation to different human populations by HIV-1 revealed by codon-based analyses. PLoS Comput Biol 2: e62.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Pond, S.L.1
Frost, S.D.2
Grossman, Z.3
Gravenor, M.B.4
Richman, D.D.5
-
30
-
-
17744396121
-
Not so different after all: a comparison of methods for detecting amino acid sites under selection
-
Kosakovsky Pond SL, Frost SD, (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22: 1208-1222.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1208-1222
-
-
Kosakovsky Pond, S.L.1
Frost, S.D.2
-
32
-
-
33744457709
-
A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses
-
Fares MA, Travers SA, (2006) A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses. Genetics 173: 9-23.
-
(2006)
Genetics
, vol.173
, pp. 9-23
-
-
Fares, M.A.1
Travers, S.A.2
-
33
-
-
36749070008
-
Using evolutionary tools to refine the new hypervariable region 3 within the envelope 2 protein of hepatitis C virus
-
Torres-Puente M, Cuevas JM, Jiménez-Hernández N, Bracho MA, García-Robles I, et al. (2008) Using evolutionary tools to refine the new hypervariable region 3 within the envelope 2 protein of hepatitis C virus. Infect Genet Evol 8: 74-82.
-
(2008)
Infect Genet Evol
, vol.8
, pp. 74-82
-
-
Torres-Puente, M.1
Cuevas, J.M.2
Jiménez-Hernández, N.3
Bracho, M.A.4
García-Robles, I.5
-
34
-
-
79959747136
-
Interaction between potyvirus P3 and ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) of host plants
-
Lin L, Luo Z, Yan F, Lu Y, Zheng H, et al. (2011) Interaction between potyvirus P3 and ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) of host plants. Virus Genes 43: 90-92.
-
(2011)
Virus Genes
, vol.43
, pp. 90-92
-
-
Lin, L.1
Luo, Z.2
Yan, F.3
Lu, Y.4
Zheng, H.5
-
35
-
-
77954687469
-
Formation of complexes at plasmodesmata for potyvirus intercellular movement is mediated by the viral protein P3N-PIPO
-
Wei T, Zhang C, Hong J, Xiong R, Kasschau KD, et al. (2010) Formation of complexes at plasmodesmata for potyvirus intercellular movement is mediated by the viral protein P3N-PIPO. PLoS Pathog 6: e1000962.
-
(2010)
PLoS Pathog
, vol.6
-
-
Wei, T.1
Zhang, C.2
Hong, J.3
Xiong, R.4
Kasschau, K.D.5
-
36
-
-
77649186721
-
Mutational analysis of the putative PIPO of Soybean mosaic virus suggests disruption of PIPO protein impedes movement
-
Wen RH, Hajimorad MR, (2010) Mutational analysis of the putative PIPO of Soybean mosaic virus suggests disruption of PIPO protein impedes movement. Virology 400: 1-7.
-
(2010)
Virology
, vol.400
, pp. 1-7
-
-
Wen, R.H.1
Hajimorad, M.R.2
-
37
-
-
80052405309
-
Amino acid changes in P3, and not the overlapping PIPO-encoded protein, determine virulence of Soybean mosaic virus on functionally immune Rsv1-genotype soybean
-
Wen RH, Maroof MA, Hajimorad MR, (2011) Amino acid changes in P3, and not the overlapping PIPO-encoded protein, determine virulence of Soybean mosaic virus on functionally immune Rsv1-genotype soybean. Mol Plant Pathol 10-3703.
-
(2011)
Mol Plant Pathol
, pp. 3703-3710
-
-
Wen, R.H.1
Maroof, M.A.2
Hajimorad, M.R.3
-
38
-
-
21644467790
-
Interaction between tobacco ribulose-1,5-biphosphate carboxylase/oxygenase large subunit (RubisCO-LSU) and the PVY coat protein (PVY-CP)
-
Feki S, Loukili MJ, Triki-Marrakchi R, Karimova G, Old I, et al. (2005) Interaction between tobacco ribulose-1,5-biphosphate carboxylase/oxygenase large subunit (RubisCO-LSU) and the PVY coat protein (PVY-CP). Eur J Plant Pathol 112: 221-234.
-
(2005)
Eur J Plant Pathol
, vol.112
, pp. 221-234
-
-
Feki, S.1
Loukili, M.J.2
Triki-Marrakchi, R.3
Karimova, G.4
Old, I.5
-
39
-
-
36248954431
-
The HC-Pro protein of Potato virus Y interacts with NtMinD of tobacco
-
Jin Y, Ma D, Dong J, Li D, Deng C, et al. (2007) The HC-Pro protein of Potato virus Y interacts with NtMinD of tobacco. Mol Plant Microbe Interact 20: 1505-1511.
-
(2007)
Mol Plant Microbe Interact
, vol.20
, pp. 1505-1511
-
-
Jin, Y.1
Ma, D.2
Dong, J.3
Li, D.4
Deng, C.5
-
40
-
-
33144489725
-
Identification of a Plum pox virus CI-interacting protein from chloroplast that has a negative effect in virus infection
-
Jiménez I, López L, Alamillo JM, Valli A, García JA, (2006) Identification of a Plum pox virus CI-interacting protein from chloroplast that has a negative effect in virus infection. Mol Plant Microbe Interact 19: 350-358.
-
(2006)
Mol Plant Microbe Interact
, vol.19
, pp. 350-358
-
-
Jiménez, I.1
López, L.2
Alamillo, J.M.3
Valli, A.4
García, J.A.5
-
41
-
-
35248819152
-
A potyvirus P1 protein interacts with the Rieske Fe/S protein of its host
-
Shi Y, Chen J, Hong X, Chen J, Adams MJ, (2007) A potyvirus P1 protein interacts with the Rieske Fe/S protein of its host. Mol Plant Pathol 8: 785-790.
-
(2007)
Mol Plant Pathol
, vol.8
, pp. 785-790
-
-
Shi, Y.1
Chen, J.2
Hong, X.3
Chen, J.4
Adams, M.J.5
-
42
-
-
0026794659
-
Mutational analysis of the tobacco etch potyviral 35-kDa proteinase: identification of essential residues and requirements for autoproteolysis
-
Verchot J, Herndon KL, Carrington JC, (1992) Mutational analysis of the tobacco etch potyviral 35-kDa proteinase: identification of essential residues and requirements for autoproteolysis. Virology 190: 298-306.
-
(1992)
Virology
, vol.190
, pp. 298-306
-
-
Verchot, J.1
Herndon, K.L.2
Carrington, J.C.3
-
43
-
-
34248209204
-
Molecular dissection of the Potato virus Y VPg virulence factor reveals complex adaptations to the pvr2 resistance allelic series in pepper
-
Ayme V, Petit-Pierre J, Souche S, Palloix A, Moury B, (2007) Molecular dissection of the Potato virus Y VPg virulence factor reveals complex adaptations to the pvr2 resistance allelic series in pepper. J Gen Virol 88: 1594-1601.
-
(2007)
J Gen Virol
, vol.88
, pp. 1594-1601
-
-
Ayme, V.1
Petit-Pierre, J.2
Souche, S.3
Palloix, A.4
Moury, B.5
-
44
-
-
33646360571
-
Different mutations in the genome-linked protein VPg of Potato virus Y confer virulence on the pvr2(3) resistance in pepper
-
Ayme V, Souche S, Caranta C, Jacquemond M, Chadoeuf J, et al. (2006) Different mutations in the genome-linked protein VPg of Potato virus Y confer virulence on the pvr2(3) resistance in pepper. Mol Plant Microbe Interact 19: 557-563.
-
(2006)
Mol Plant Microbe Interact
, vol.19
, pp. 557-563
-
-
Ayme, V.1
Souche, S.2
Caranta, C.3
Jacquemond, M.4
Chadoeuf, J.5
-
45
-
-
0036949634
-
A natural recessive resistance gene against Potato virus Y in pepper corresponds to the eukaryotic initiation factor 4E (eIF4E)
-
Ruffel S, Dussault MH, Palloix A, Moury B, Bendahmane A, et al. (2002) A natural recessive resistance gene against Potato virus Y in pepper corresponds to the eukaryotic initiation factor 4E (eIF4E). Plant J 32: 1067-1075.
-
(2002)
Plant J
, vol.32
, pp. 1067-1075
-
-
Ruffel, S.1
Dussault, M.H.2
Palloix, A.3
Moury, B.4
Bendahmane, A.5
-
46
-
-
1242265926
-
Mutations in Potato virus Y genome-linked protein determine virulence toward recessive resistances in Capsicum annuum and Lycopersicon hirsutum
-
Moury B, Morel C, Johansen E, Guilbaud L, Souche S, et al. (2004) Mutations in Potato virus Y genome-linked protein determine virulence toward recessive resistances in Capsicum annuum and Lycopersicon hirsutum. Mol Plant Microbe Interact 17: 322-329.
-
(2004)
Mol Plant Microbe Interact
, vol.17
, pp. 322-329
-
-
Moury, B.1
Morel, C.2
Johansen, E.3
Guilbaud, L.4
Souche, S.5
-
47
-
-
30144442373
-
Translation initiation factors: a weak link in plant RNA virus infection
-
Robaglia C, Caranta C, (2006) Translation initiation factors: a weak link in plant RNA virus infection. Trends Plant Sci 11: 40-45.
-
(2006)
Trends Plant Sci
, vol.11
, pp. 40-45
-
-
Robaglia, C.1
Caranta, C.2
-
48
-
-
80052180304
-
dN/dS-based methods detect positive selection linked to trade-offs between different fitness traits in the coat protein of Potato virus Y
-
Moury B, Simon V, (2011) dN/dS-based methods detect positive selection linked to trade-offs between different fitness traits in the coat protein of Potato virus Y. Mol Biol Evol 28: 2707-2717.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2707-2717
-
-
Moury, B.1
Simon, V.2
-
49
-
-
0031925390
-
Mutations in the HC-Pro gene of Zucchini yellow mosaic potyvirus: effects on aphid transmission and binding to purified virions
-
Peng YH, Kadoury D, Gal-On A, Huet H, Wang Y, et al. (1998) Mutations in the HC-Pro gene of Zucchini yellow mosaic potyvirus: effects on aphid transmission and binding to purified virions. J Gen Virol 79: 897-904.
-
(1998)
J Gen Virol
, vol.79
, pp. 897-904
-
-
Peng, Y.H.1
Kadoury, D.2
Gal-On, A.3
Huet, H.4
Wang, Y.5
-
50
-
-
0345215184
-
A single conserved amino acid in the coat protein gene of Pea seed-borne mosaic potyvirus modulates the ability of the virus to move systemically in Chenopodium quinoa
-
Andersen K, Johansen IE, (1998) A single conserved amino acid in the coat protein gene of Pea seed-borne mosaic potyvirus modulates the ability of the virus to move systemically in Chenopodium quinoa. Virology 241: 304-311.
-
(1998)
Virology
, vol.241
, pp. 304-311
-
-
Andersen, K.1
Johansen, I.E.2
-
51
-
-
0031974475
-
Charge changes near the N terminus of the coat protein of two potyviruses affect virus movement
-
López-Moya JJ, Pirone TP, (1998) Charge changes near the N terminus of the coat protein of two potyviruses affect virus movement. J Gen Virol 79: 161-165.
-
(1998)
J Gen Virol
, vol.79
, pp. 161-165
-
-
López-Moya, J.J.1
Pirone, T.P.2
-
52
-
-
33847637711
-
Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae
-
Valli A, López-Moya JJ, García JA, (2007) Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae. J Gen Virol 88: 1016-1028.
-
(2007)
J Gen Virol
, vol.88
, pp. 1016-1028
-
-
Valli, A.1
López-Moya, J.J.2
García, J.A.3
-
53
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 32: 1792-1797.
-
(2004)
Nucl Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
54
-
-
79957613599
-
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
55
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
56
-
-
0024341852
-
A cladistic measure of gene flow inferred from the phylogenies of alleles
-
Slatkin M, Maddison WP, (1989) A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123: 603-613.
-
(1989)
Genetics
, vol.123
, pp. 603-613
-
-
Slatkin, M.1
Maddison, W.P.2
-
57
-
-
0035172763
-
Identification of shared populations of human immunodeficiency virus type 1 infecting microglia and tissue macrophages outside the central nervous system
-
Wang TH, Donaldson YK, Brettle RP, Bell JE, Simmonds P, (2001) Identification of shared populations of human immunodeficiency virus type 1 infecting microglia and tissue macrophages outside the central nervous system. J Virol 75: 11686-11699.
-
(2001)
J Virol
, vol.75
, pp. 11686-11699
-
-
Wang, T.H.1
Donaldson, Y.K.2
Brettle, R.P.3
Bell, J.E.4
Simmonds, P.5
-
58
-
-
65649117685
-
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
59
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
60
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang Z, Nielsen R, Goldman N, Pedersen AM, (2000) Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155: 431-449.
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
-
61
-
-
0016355478
-
New look at statistical-model identification
-
Akaike H, (1974) New look at statistical-model identification. IEEE Trans Automat Control AC19: 716-723.
-
(1974)
IEEE Trans Automat Control
, vol.AC19
, pp. 716-723
-
-
Akaike, H.1
-
62
-
-
8844245563
-
SWAPSC: sliding window analysis procedure to detect selective constraints
-
Fares MA, (2004) SWAPSC: sliding window analysis procedure to detect selective constraints. Bioinformatics 20: 2867-2868.
-
(2004)
Bioinformatics
, vol.20
, pp. 2867-2868
-
-
Fares, M.A.1
-
63
-
-
0027403961
-
Unbiased estimation of the rates of synonymous and nonsynonymous substitution
-
Li WH, (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J Mol Evol 36: 96-99.
-
(1993)
J Mol Evol
, vol.36
, pp. 96-99
-
-
Li, W.H.1
-
64
-
-
0026739607
-
Signature pattern analysis: a method for assessing viral sequence relatedness
-
Korber B, Myers G, (1992) Signature pattern analysis: a method for assessing viral sequence relatedness. AIDS Res Hum Retroviruses 8: 1549-1560.
-
(1992)
AIDS Res Hum Retroviruses
, vol.8
, pp. 1549-1560
-
-
Korber, B.1
Myers, G.2
|