Towards an integrated molecular model of plant-virus interactions

Current Opinion in Virology

Volumn 2, Issue 6, 2012, Pages 719-724

  Elena, Santiago F ^a,b   Rodrigo, Guillermo ^a,c  

^a Ciudad Politécnica de la Innovación   (Spain)

^b SANTA FE INSTITUTE   (United States)

^c CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; MOLECULAR MODEL; NONHUMAN; PLANT VIRUS; POTYVIRUS; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN TARGETING; VIROGENESIS; VIRUS CELL INTERACTION; VIRUS INFECTION; VIRUS REPLICATION; VIRUS VIRULENCE; BIOLOGICAL MODEL; HOST PATHOGEN INTERACTION; PATHOGENICITY; PHYSIOLOGY; REVIEW; SYSTEMS BIOLOGY; VIROLOGY;

ARABIDOPSIS; HOST-PATHOGEN INTERACTIONS; MODELS, BIOLOGICAL; POTYVIRUS; PROTEIN INTERACTION MAPS; SYSTEMS BIOLOGY;

EID: 84876423513     PISSN: 18796257     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.coviro.2012.09.004     Document Type: Review

References (50)

1. S.L. Tan, G. Ganji, B. Paeper, S. Proll, and M.G. Katze Systems biology and the host response to viral infection Nat Biotechnol 25 2007 1383 1389
2. S.M. Bailer, and J. Haas Connecting viral with cellular interactomes Curr Opin Microbiol 12 2009 453 459
3. S.A. Whitham, and Y. Wang Roles for host factors in plant viral pathogenicity Curr Opin Plant Biol 7 2004 365 371
4. J.N. Culver, and M.S. Padmanabhan Virus-induced disease: altering host physiology one interaction at a time Annu Rev Phytopathol 45 2007 221 243
5. P.N. Dodds, and J.P. Rathjen Plant immunity: towards an integrated view of plant-pathogen interactions Nat Rev Genet 11 2010 539 548
6. S.F. Elena, J. Carrera, and G. Rodrigo A systems biology approach to the evolution of plant-virus interactions Curr Opin Plant Biol 14 2011 372 377
7. D. Guo, M.L. Rajamäki, M. Saarma, and J.P.T. Valkonen Towards a protein interaction map of potyviruses: protein interaction matrixes of two potyviruses based on the yeast two-hybrid system J Gen Virol 82 2001 935 939
8. P. Uetz, Y.A. Dong, C. Zeretzke, C. Atzler, A. Baiker, B. Berger, S.V. Rajagopala, M. Roupelieva, D. Rose, E. Fossum, and J. Haas Herpesviral protein networks and their interaction with the human proteome Science 311 2006 239 242
9. N. Gulbahce, H. Yan, A. Dricot, M. Padi, D. Byrdsong, R. Franchi, D.-S. Lee, O. Rozenblatt-Rosen, J.C. Mar, and M.A. Calderwood Viral perturbations of host networks reflect disease etiology PLoS Comput Biol 8 2012 e1002531
10. V. Navratil, B. de Chassey, C.R. Combe, and V. Lotteau When the human viral infectome and diseasome networks collide: towards a systems biology platform for the aetiology of human diseases BMC Syst Biol 5 2011 13
11. S. Urcuqui-Inchima, A.L. Haenni, and F. Bernardi Potyvirus proteins: a wealth of functions Virus Res 74 2001 157 175
12. E. Zilian, and E. Maiss Detection of Plum pox potyviral protein-protein interactions in planta using an optimized mRFP-based bimolecular fluorescence complementation system J Gen Virol 92 2011 2711 2723
13. Y. Shi, J. Chen, X. Hong, J. Chen, and M.J. Adams A potyvirus P1 protein interacts with the Rieske Fe/S protein of its host Mol Plant Pathol 8 2007 785 790
14. R. Anandalakshmi, R. Marathe, X. Ge, J.M. Herr Jr., C. Mau, A. Mallory, G. Pruss, L. Bowman, and V.B. Vance A calmodulin-related protein that suppresses posttranscriptional gene silencing in plants Science 290 2000 142 144
15. M.W. Endres, B.D. Gregory, Z. Gao, A.W. Foreman, S. Mlotshwa, X. Ge, G.J. Pruss, J.R. Ecker, L.H. Bowman, and V. Vance Two plant viral suppressors of silencing require the ethylene-inducible host transcription factor RAV2 to block RNA silencing PLoS Pathog 6 2010 e1000729
16. W. Shen, P. Yan, L. Gao, X. Pan, J. Wu, and P. Zhou Helper component-proteinase (HC-Pro) protein of Papaya ringspot virus interacts with papaya calreticulin Mol Plant Pathol 11 2010 335 346
17. D. Guo, C. Spetz, M. Saarma, and J.P. Valkonen Two potato proteins, including a novel RING finger protein (HIP1), interact with the potyviral multifunctional protein HC-Pro Mol Plant-Microbe Interact 16 2003 405 410
18. Y. Jin, D. Ma, J. Dong, D. Li, C. Deng, J. Jin, and T. Wang The HC-pro protein of Potato virus Y interacts with NtMinD of tobacco Mol Plant-Microbe Interact 20 2007 1505 1511
19. A.S. Dielen, F.T. Sassaki, J. Walter, T. Michon, G. Menard, G. Pagny, R. Krause-Sakate, G. Maia Ide, S. Badaoui, and O. Le Gall The 20S proteasome alpha5 subunit of Arabidopsis thaliana carries an RNase activity and interacts in planta with the Lettuce mosaic potyvirus Hc-Pro protein Mol Plant Pathol 12 2011 137 150
20. Y. Jin, D. Ma, J. Dong, J. Jin, D. Li, C. Deng, and T. Wang HC-Pro protein of Potato virus Y can interact with three Arabidopsis 20S proteasome subunits in planta J Virol 81 2007 12881 12888
21. P. Vijayapalani, M. Maeshima, N. Nagasaki-Takekuchi, and W.A. Miller Interaction of the trans-frame potyvirus protein P3N-PIPO with host protein PCaP1 facilitates potyvirus movement PLoS Pathog 8 2012 e1002639
22. L. Lin, Z. Luo, F. Yan, Y. Lu, H. Zheng, and J. Chen Interaction between potyvirus P3 and ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) of host plants Virus Genes 43 2011 90 92
23. D.D. Bilgin, Y. Liu, M. Schiff, and S.P. Dinesh-Kumar P58IPK, a plant ortholog of double-stranded RNA-dependent protein kinase PKR inhibitor, functions in viral pathogenesis Dev Cell 4 2003 651 661
24. I. Jiménez, L. López, J.M. Alamillo, A. Valli, and J.A. García Identification of a Plum pox virus CI-interacting protein from chloroplast that has a negative effect in virus infection Mol Plant-Microbe Interact 19 2006 350 358
25. P.J. Dufresne, E. Ubalijoro, M.G. Fortin, and J.-F. Laliberté Arabidopsis thaliana class II poly(A)-binding proteins are required for efficient multiplication of Turnip mosaic virus J Gen Virol 89 2008 2339 2348
26. P.J. Dufresne, K. Thivierge, S. Cotton, C. Beauchemin, C. Ide, E. Ubalijoro, J.-F. Laliberté, and M.G. Fortin Heat shock 70 protein interaction with Turnip mosaic virus RNA-dependent RNA polymerase within virus-induced membrane vesicles Virology 374 2008 217 227
27. A.D. Lellis, K.D. Kasschau, S.A. Whitham, and J.C. Carrington Loss-of-susceptibility mutants of Arabidopsis thaliana reveal an essential role for eIF(iso)4E during potyvirus infection Curr Biol 12 2002 1046 1051
28. S. Ray, H. Yumak, A. Domashevskiy, M.A. Khan, D.R. Gallie, and D.J. Goss Tobacco etch virus mRNA preferentially binds wheat germ eukaryotic initiation factor (eIF) 4G rather than eIFiso4G J Biol Chem 281 2006 35826 35834
29. M. Ala-Poikela, E. Goytia, T. Haikonen, M.-L. Rajamäki, and J.P.T. Valkonen Helper component proteinase of the genus potyvirus is an interaction partner of translation initiation factors eIF(iso)4E and eIF4E and contains a 4E binding motif J Virol 85 2011 6784 6794
30. P. Dunoyer, C. Thomas, S. Harrison, F. Revers, and A. Maule A cysteine-rich plant protein potentiates potyvirus movement through an interaction with the virus genome-linked protein VPg J Virol 78 2004 2301 2309
31. T.-S. Huang, T. Wei, J.-F. Laliberté, and A. Wang A host RNA helicase-like protein, AtRH8, interacts with the potyviral genome-linked protein, VPg, associates with the virus accumulation complex, and is essential for infection Plant Physiol 152 2010 255 266
32. D. Hofius, A.T. Maier, C. Dietrich, I. Jungkunz, F. Bornke, E. Maiss, and U. Sonnewald Capsid protein-mediated recruitment of host DnaJ-like proteins is required for Potato virus Y infection in tobacco plants J Virol 81 2007 11870 11880
33. Arabidopsis Interactome Mapping Consortium Evidence for network evolution in an Arabidopsis interactome map Science 333 2011 601 607
34. P. Shannon, A. Markiel, O. Ozier, N.S. Baliga, J.T. Wang, D. Ramage, N. Amin, B. Schwikowski, and T. Ideker Cytoscape: a software environment for integrated models of biomolecular interaction networks Genome Res 13 2003 2498 2504
35. A.L. Barábasi, and Z.N. Oltvai Network biology: understanding the cell's functional organization Nat Rev Genet 5 2004 101 113
36. M.A. Calderwood, K. Venkatesan, L. Xing, M.R. Chase, A. Vazquez, A.M. Holthaus, A.E. Ewence, N. Li, T. Hirozane-Kishikawa, and D.E. Hill Epstein-Barr virus and virus human protein interaction maps Proc Natl Acad Sci U S A 104 2007 7606 7611
37. M.D. Dyer, T.M. Murali, and B.W. Sobral The landscape of human proteins interacting with viruses and other pathogens PLoS Pathog 4 2008 e32
38. B. De Chassey, V. Navratil, L. Tafforeau, M.S. Hiet, A. Aublin-Gex, S. Agaugué, G. Meiffren, F. Pradezynski, B.F. Faria, and T. Chantier Hepatitis C virus infection protein network Mol Syst Biol 4 2008 230
39. M.S. Mukhtar, A.-R. Carvunis, M. Dreze, P. Epple, J. Steinbrenner, J. Moore, M. Tasan, M. Galli, T. Hao, and M.T. Nishimura Independently evolved virulence effectors converge onto hubs in a plant immune system network Science 333 2011 596 601
40. J. Carrera, G. Rodrigo, A. Jaramillo, and S.F. Elena Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions Genome Biol 10 2009 R96
41. Y. Jaillais, and J. Chory Unraveling the paradoxes of plant hormone signaling integration Nat Struct Mol Biol 17 2010 642 645
42. S.A. Whitham, S. Quan, H.S. Chang, B. Cooper, B. Estes, T. Zhu, X. Wang, and Y.M. Hou Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants Plant J 33 2003 271 283
43. G. Rodrigo, J. Carrera, V. Ruiz-Ferrer, F.J. del Toro, C. Llave, O. Voinnet, and S.F. Elena A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens PLoS ONE 7 2012 e40526
44. G. Warsow, B. Greber, S.S. Falk, C. Harder, M. Siatkowski, S. Schordan, A. Som, N. Endlich, H. Scholer, and D. Repsilber ExprEssence - revealing the essence of differential experimental data in the context of an interaction/regulation network BMC Syst Biol 4 2010 164
45. A. Pichlmair, K. Kandasamy, G. Alvisi, O. Mulhern, R. Sacco, M. Habjan, M. Binder, A. Stefanovic, C.-A. Eberle, and A. Goncalves Viral immune modulators perturb the human molecular network by common and unique strategies Nature 487 2012 486 490
46. I. Pagán, A. Fraile, E. Fernández-Fueyo, N. Montes, C. Alonso-Blanco, and F. García-Arenal Arabidopsis thaliana as a model for the study of plant-virus coevolution Phil Trans R Soc B 365 2010 1983 1995
47. E. Domingo, and J.J. Holland RNA virus mutations and fitness for survival Annu Rev Microbiol 51 1997 151 178
48. J.R. Meyer, D.T. Dobias, J.S. Weitz, J.E. Barrick, R.T. Quick, and R.E. Lenski Repeatability and contingency in the evolution of a key innovation in phage lambda Science 335 2012 428 432
49. P. Agudelo-Romero, P. Carbonell, M.A. Pérez-Amador, and S.F. Elena Virus adaptation by manipulation of host's gene expression PLoS ONE 3 2008 e2397
50. P.D. Nagy Yeast as a model host to explore plant virus-host interactions Annu Rev Phytopathol 46 2008 217 242