Characterization of potato virus Y isolates from tomato crops in northeast Spain

European Journal of Plant Pathology

Volumn 115, Issue 2, 2006, Pages 247-258

  Aramburu, J ^a   Galipienso, L ^a   Matas, M ^a  

^a IRTA   (Spain)

Author keywords

Monoclonal antibodies; PVY strains; RT PCR; Sequence analysis; SSCP

Indexed keywords

AMPLIFICATION; ANTIBODY; BIOLOGICAL CHARACTERISTICS; COMPARATIVE STUDY; DISEASE CONTROL; ENZYME ACTIVITY; GENETIC DIFFERENTIATION; IMMUNOASSAY; PLANT; POLYMERASE CHAIN REACTION; RECOMBINATION; VIRUS;

EURASIA; EUROPE; SOUTHERN EUROPE; SPAIN;

LYCOPERSICON ESCULENTUM; NICOTIANA; POTATO VIRUS Y; POTYVIRUS; SOLANUM TUBEROSUM;

EID: 33745683668     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-006-9003-x     Document Type: Article

References (39)

1. Abad P and Jorda C (2000) Characterization of potato Y potyvirus isolates from tomato crops in Islas Canarias (Spain). OEPP/EPPO Bulletin 30: 281-287.
2. Blanco-Urgoiti B, Sanchez F, Dopazo J and Ponz F (1996) A strain-type clustering of potato virus Y based on the genetic distance between isolates calculated by RFLP analysis of the amplified coat protein. Archives of Virology 141: 2425-2442.
3. Blanco-Urgoiti B, Sanchez F, dePerez San Roman C, Dopazo J and Ponz F (1998) Potato virus Y group C isolates are a homogeneous pathotype but two different genetic strains. Journal of General Virology 79: 2037-2042.
4. Beczner L, Horvath J, Romhanyi J and Foster H (1984) Studies on the etiology of tuber necrotic ringspot disease in potato. Potato Research 27: 339-352.
5. Boonham N and Barker I (1998) Strain specific recombinant antibodies to potato virus Y potivirus. Journal of Virological Methods 74: 193-199.
6. N) found recently in Poland. Potato Research 34: 179-182.
7. Clark MF and Adams AN (1977) Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. Journal of General Virology 34: 475-483.
8. De Bokx JA and Hutttinga H (1981) Potato virus Y CMI/AAB. Description of Plants viruses No. 242.
9. Eckert KA and Kunkel TA (1990) High fidelity by the Thermus aquaticus DNA polymerase. Nucleic Acids Research 18: 3737-3744.
10. Fanigliulo A, Comes S, Pacella R, Harrach B, Martin DP and Crescenzi A (2004) Characterization of potato virus Y nnp strain inducing veinal necrosis in pepper: a naturally occurring recombinant strain of PVY. Archives of Virology 150: 709-720.
11. Galipienso L, Herranz MC, Pallas V and Aramburu J (2005) Detection of a tomato strain of Parietaria mottle virus (PMoV-T) by molecular hybridisation and reverse transcriptase-polymerase chain reaction in field samples from north-eastern Spain. Plant Pathology 54: 29-35.
12. Gebré-Selassié K, Marchoux G, Delcolle B and Pochard E (1985) Variabilité naturelle des souches du virus Y de la pomme de terre dans les cultures de piment du sud-est de la France Caractérisation et classification en pathotypes. Agronomie 5: 621-630.
13. N isolates. Archives of Virology 147: 363-378.
14. Gooding GV (1985) Relationship between strain of potato virus Y and breeding for resistance, cross protection, and interference. Tobacco Science 29: 99-104.
15. Gugerli P and Fries P (1983) Characterization of monoclonal antibodies to potato virus Y and their use for virus detection. Journal of General Virology 64: 2471-2477.
16. Igloi GL (1983) A silver stain for the detection of nanogram amounts of tRNA following two-dimensional electrophoresis. Analytical Biochemistry 134: 184-188.
17. Jones RAC (1990) Strain group specific and virus specific hypersensitive reactions to infection with potyviruses in potato cultivars. Annals of Applied Biology 117: 93-105.
18. Jordan R and Hammond J (1991) Comparison and differentiation of potyvirus isolates and identification of strain-, virus-, subgroup-specific and potyvirus group-common epitopes using monoclonal antibodies. Journal of General Virology 72: 25-36.
19. Kerlan C, Tribodet M, Glais L and Guillet M (1999) Variability of potato virus Y in potato crops France. Journal of Phytopathology 147: 643-651.
20. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 11-120.
21. Kumar S, Tamura K, Jakobsen IB and Nei M (2001) MEGA 2: Molecular Evolutionary Genetics Analysis software, Arizona State University, Arizona, USA.
22. Légnani R, Gébré-Selassie K, Marchoux G and Laterrot H (1997) Interactions between PVY and tomato lines. Tomato Genetics Cooperative Report (USA) 47: 13-15.
23. Llave C, Martínez B, Diaz-Ruiz JR and Lopez-Abella D (1999) Serological analysis and coat protein sequence determination of potato virus Y (PVY) pepper pathotypes and differentiation from other PVY strains. European Journal of Plant Pathology 105: 847-857.
24. Luis-Arteaga M, Arnedo M and Gil R (1997) New potato virus Y pathotype in pepper. Capsicum and Eggplant Newsletter 16: 85-86.
25. Marchoux G, Gebré-Selassié K and Gognalons et Luis-Arteaga P M (2000) Le virus Y de la pomme de terre s'adapte à d'autres solanacées. Phytoma 533: 45-47.
26. Maynard DN (1991) Nutritional diseases 60-63. In: Jones JB, Stall RE and Zitter TA (eds) Compendium of Tomato Diseases (73 pp) APS press, USA.
27. Morel C, Gognalons P, Guilbaud L, Caranta C, Gebré-Selassié K, Marchoux G and Jacquemond M (2000) Biological and molecular characterisation of two tomato strains of potato virus Y (PVY). Acta-Physiologiae-Plantarum 22: 336-343.
28. Orita M, Iwahana H, Kanazawa H, Hayashi K and Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-stranded conformation polymorphism. Proceedings of the National Academy of Sciences of the United States of America 86: 2766-2770.
29. Revers F, Le Gall O, Candresse T, Le Romancer M and Dunez J (1996) Frequent occurrence of recombinant potyvirus isolates. Journal of General Virology 77: 1953-1965.
30. Romero A, Blanco-Urgoiti B, Soto MJ, Fereres A and Ponz F (2001) Characterization of typical pepper-isolates of PVY reveals multiple pathotypes within a single genetic strain. Virus Research 79: 71-80.
31. Rosner A, Lachman A, Pearlsman L, Maslenin L and Antignus Y (2000) Molecular characterisation and differential diagnosis of a necrotic PVY isolate in tomato. Annals of Applied Biology 137: 253-257.
32. Rubio L, Ayllon MA, Guerri J, Pappu H, Niblett C and Moreno P (1996) Differentiation of citrus tristeza closterovirus (CTV) isolates by single-strand conformation polymorphism analysis of the coat protein gene. Annals of Applied Biology 129: 479-489.
33. Saitou N and Nei M (1987) The neighbour-joing method: A new method for reconstruction Phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
34. Shukla DD, Ward CW and Brunt AA (1994) The Potyviridae, CAB International, Wallingford, UK, 516 pp.
35. Soto MJ, Luis-Arteaga M, Fereres A and Ponz F (1994) Limited degree of serological variability in pepper strains of potato virus Y as revealed by analysis with monoclonal antibodies. Annals of Applied Biology 124: 37-43.
36. Thomas JE and McGrath DJ (1988) Inheritance of resistance to potato virus Y in tomato. Australian. Journal of Agricultural Research 39: 475-479.
37. Thompson JD, Higgins DG and Gibbons TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighing position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
38. Tordo VM, Chachulska AM, Fakhfakh H, Le Romancer M, Robaglia C and Astier-Manifacier S (1995) Sequence polymorphism in the 5NTR and in the P1 coding region of potato virus Y genomic RNA. Journal of General Virology 76: 939-949.
39. Worobey M and Holmes EC (1999) Evolutionary aspects of recombination in RNA viruses. Journal of General Virology 80: 2535-2543.