A new lineage sheds light on the evolutionary history of Potato virus y

Molecular Plant Pathology

Volumn 11, Issue 1, 2010, Pages 161-168

  Moury, Benoit ^a  

^a INRA   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; POTYVIRUS; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; POTYVIRUS; SEQUENCE HOMOLOGY, AMINO ACID;

CAPSICUM; NICOTIANA TABACUM; POTATO VIRUS Y; POTYVIRUS; SOLANUM TUBEROSUM;

EID: 73649100637     PISSN: 14646722     EISSN: 13643703     Source Type: Journal    
DOI: 10.1111/j.1364-3703.2009.00573.x     Document Type: Article

References (33)

1. Ahn, H.I., Yoon, J.Y., Hong, J.S., Yoon, H.I., Kim, M.J., Ha, J.H., Rhie, M.J., Choi, J.K., Park, W.M. Ryu, K.H. (2006) The complete genome sequence of Pepper severe mosaic virus and comparison with other potyviruses. Arch. Virol. 151, 2037 2045.
2. d'Aquino, L., Dalmay, T., Burgyán, J., Ragozzino, A. Scala, F. (1995) Host range and sequence analysis of an isolate of Potato virus Y inducing veinal necrosis in pepper. Plant Dis. 79, 1046 1050.
3. Ayme, V., Souche, S., Caranta, C., Jacquemond, M., Chadœuf, J., Palloix, A. Moury, B. (2006) Different mutations in the genome-linked protein VPg of Potato virus Y confer virulence on the pvr23 resistance in pepper. Mol. Plant-Microbe Interact. 19, 557 563.
4. Ayme, V., Petit-Pierre, J., Souche, S., Palloix, A. Moury, B. (2007) Molecular dissection of the Potato virus Y VPg virulence factor reveals complex adaptations to the pvr2 resistance allelic series in pepper. J. Gen. Virol. 88, 1594 1601.
5. Ben Khalifa, M., Simon, V., Marrakchi, M., Fakhfakh, H. Moury, B. (2009) Contribution of host plant resistance and geographic distance to the structure of Potato virus Y (PVY) populations in pepper in Northern Tunisia. Plant Pathol. 58, 763 772.
6. Blanco-Urgoiti, B., Sanchez, F., Perez de san Roman, C., Dopazo, J. Ponz, F. (1998) PVY-C isolates are a homogeneous pathotype but two different genetic strains. J. Gen. Virol. 79, 2037 2042.
7. Bodin, M., Glasa, M., Verger, D., Costes, E. Dosba, F. (2003) Distribution of the sour cherry isolate of Plum pox virus in infected Prunus rootstocks. J. Phytopathol. 151, 11 12.
8. Bouhachem, S.B., Khamassy, N., Glais, L. Kerlan, C. (2008) Occurrence in Tunisia of potato tuber necrotic ringspot disease (PTNRD) caused by variant PVYNTN of Potato virus Y. Plant Pathol. 57, 388.
9. De Bokx, J.A. Huttinga, H. (1981) Potato virus Y. CMI/AAB Descriptions of Plant Viruses, 242, 6pp, available at: http://www.dpvweb.net/dpv/showdpv.php? dpvno=242
10. Dujovny, G., Sasaya, T., Koganesawa, H., Usugi, T., Shohara, K. Lenardon, S.L. (2000) Molecular characterization of a new potyvirus infecting sunflower. Arch. Virol. 145, 2249 2258.
11. Fanigliulo, A., Comes, S., Pacella, R., Harrach, B., Martin, D.P. Crescenzi, A. (2005) Characterisation of Potato virus Y nnp strain inducing veinal necrosis in pepper: a naturally occurring recombinant strain of PVY. Arch. Virol. 150, 709 720.
12. Gebre Selassie, K., Marchoux, G., Delecolle, B. Pochard, E. (1985) Variabilité naturelle des souches du virus Y de la pomme de terre dans les cultures de piment du sud-est de la France. Caractérisation et classification en pathotypes. Agronomie, 5, 621 630.
13. Glais, L., Tribodet, M. Kerlan, C. (2002) Genetic variability in Potato potyvirus Y (PVY): evidence that PVYNW and PVYNTN variants are single to multiple recombinants between PVYO and PVYN isolates. Arch. Virol. 147, 363 378.
14. Gooding, G.V. Tolin, S.A. (1973) Strains of Potato virus Y affecting flue-cured tobacco in the South-eastern United States. Plant Dis. Rep. 57, 200 204.
15. Guindon, S. Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696 704.
16. Haldeman-Cahill, R., Daròs, J.-A. Carrington, J.C. (1998) Secondary structures in the capsid protein coding sequence and 3′ nontranslated region involved in amplification of the Tobacco etch virus genome. J. Virol. 72, 4072 4079.
17. Inoue-Nagata, A.K., Oliveira, P.A., Dutra, L.S. Nagata, T. (2006) Bidens mosaic virus is a member of the Potato virus Y species. Virus Genes, 33, 45 49.
18. Jones, R.A.C. (1990) Strain group specific and virus specific hypersensitive reactions to infection with potyviruses in potato cultivars. Ann. Appl. Biol. 117, 93 105.
19. Kerlan, C., Tribodet, M., Glais, L. Guillet, M. (1999) Variability of Potato virus Y in potato crops in France. J. Phytopathol. 147, 643 651.
20. Martin, D.P., Williamson, C. Posada, D. (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics, 21, 260 262.
21. Moury, B., Morel, C., Johansen, E. Jacquemond, M. (2002) Evidence for diversifying selection in Potato virus Y and in the coat protein of other potyviruses. J. Gen. Virol. 83, 2563 2573.
22. Moury, B., Morel, C., Johansen, E., Guilbaud, L., Souche, S., Ayme, V., Caranta, C., Palloix, A. Jacquemond, M. (2004) Mutations in Potato virus Y genome-linked protein determine virulence towards recessive resistances in Capsicum annuum and Lycopersicon hirsutum. Mol. Plant-Microbe Interact. 17, 322 329.
23. Ogawa, T., Tomitaka, Y., Nakagawa, A. Ohshima, K. (2008) Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations. Virus Res. 131, 199 212.
24. Ohshima, K., Yamaguchi, Y., Hirota, R., Hamamoto, T., Tomimura, K., Tan, Z.Y., Sano, T., Azuhata, F., Walsh, J.A., Fletcher, J., Chen, J.S., Gera, A. Gibbs, A. (2002) Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread. J. Gen. Virol. 83, 1511 1521.
25. Posada, D. Crandall, K.A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
26. Revers, F., Le Gall, O., Candresse, T., Le Romancer, M. Dunez, J. (1996) Frequent occurrence of recombinant potyvirus isolates. J. Gen. Virol. 77, 1953 1965.
27. Rolland, M., Kerlan, C. Jacquot, E. (2009) The acquisition of molecular determinants involved in Potato virus Y necrosis capacity leads to fitness reduction in tobacco plants. J. Gen. Virol. 90, 244 252.
28. Singh, R.P., Valkonen, J.P.T., Gray, S.M., Boonham, N., Jones, R.A.C., Kerlan, C. Schubert, J. (2008) The naming of Potato virus Y strains infecting potato. Arch. Virol. 153, 1 13.
29. Strimmer, K. von Haeseler, A. (1997) Likelihood mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc. Natl. Acad. Sci. USA 94, 6815 6819.
30. Sudarsono, Woloshuk, S.L., Xiong, Z., Hellmann, G.M., Wernsman, E.A., Weissinger, A.K. Lommel, S.A. (1993) Nucleotide sequence of the capsid protein cistrons from six Potato virus Y (PVY) isolates infecting tobacco. Arch. Virol. 132, 161 170.
31. Thompson, J.D., Higgins, D.G. Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673 4680.
32. Tribodet, M., Glais, L., Kerlan, C. Jacquot, E. (2005) Characterization of Potato virus Y (PVY) molecular determinants involved in the vein necrosis symptom induced by PVYN isolates in infected Nicotiana tabacum cv. Xanthi. J. Gen. Virol. 86, 2101 2105.
33. Zucker, M. (1989) On finding all suboptimal foldings of an RNA molecule. Science, 244, 48 52.