Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation

PLoS ONE

Volumn 7, Issue 5, 2012, Pages

  Li, Rugang ^a   Gao, Shan ^b   Hernandez, Alvaro G ^c   Wechter, W Patrick ^a   Fei, Zhangjun ^b,d   Ling, Kai Shu ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b United States Department of Agriculture   (United States)

^c UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^d ROBERT W HOLLEY CENTER FOR AGRICULTURE AND HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA; SMALL INTERFERING RNA; SMALL RNA; UNCLASSIFIED DRUG; PRIMER DNA; SMALL UNTRANSLATED RNA;

ARTICLE; COMPUTER MODEL; CONTROLLED STUDY; DEEP SEQUENCING; GENE TECHNOLOGY; MEXICO; MIXED INFECTION; MOLECULAR LIBRARY; NONHUMAN; NUCLEOTIDE SEQUENCE; PEPINO MOSAIC VIRUS; PLANT GENOME; PLANT VIRUS; POTATO SPINDLE TUBER; STRAIN DIFFERENCE; TOMATO; UNITED STATES; VIRAL PLANT DISEASE; VIROID; VIRUS GENOME; VIRUS IDENTIFICATION; BIOLOGICAL MODEL; BIOLOGY; CLUSTER ANALYSIS; GENETICS; HIGH THROUGHPUT SEQUENCING; METHODOLOGY; MOLECULAR GENETICS; PHYLOGENY; POTEXVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SPECIES DIFFERENCE; VIROLOGY;

ANIMALIA; LYCOPERSICON ESCULENTUM; PEPINO MOSAIC VIRUS; POTATO SPINDLE TUBER VIROID; POTYVIRUS; VIROIDS;

CLUSTER ANALYSIS; COINFECTION; COMPUTATIONAL BIOLOGY; DNA PRIMERS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; LYCOPERSICON ESCULENTUM; MEXICO; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POTEXVIRUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, SMALL UNTRANSLATED; SPECIES SPECIFICITY; UNITED STATES; VIROIDS;

EID: 84862106478     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037127     Document Type: Article

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