-
1
-
-
0019811465
-
Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences
-
Banerji J., Rusconi S., Schaffner W. Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences. Cell 1981, 27:299-308.
-
(1981)
Cell
, vol.27
, pp. 299-308
-
-
Banerji, J.1
Rusconi, S.2
Schaffner, W.3
-
2
-
-
79953708822
-
Epigenetic regulation by lysine demethylase 5 (KDM5) enzymes in cancer
-
Blair L.P., Cao J., Zou M.R., Sayegh J., Yan Q. Epigenetic regulation by lysine demethylase 5 (KDM5) enzymes in cancer. Cancers (Basel) 2011, 3:1383-1404.
-
(2011)
Cancers (Basel)
, vol.3
, pp. 1383-1404
-
-
Blair, L.P.1
Cao, J.2
Zou, M.R.3
Sayegh, J.4
Yan, Q.5
-
3
-
-
78049402859
-
Molecular signals of epigenetic states
-
Bonasio R., Tu S., Reinberg D. Molecular signals of epigenetic states. Science 2010, 330:612-616.
-
(2010)
Science
, vol.330
, pp. 612-616
-
-
Bonasio, R.1
Tu, S.2
Reinberg, D.3
-
4
-
-
84856239091
-
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
-
Bonn S., Zinzen R.P., Girardot C., Gustafson E.H., Perez-Gonzalez A., Delhomme N., Ghavi-Helm Y., Wilczyński B., Riddell A., Furlong E.E. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat. Genet. 2012, 44:148-156.
-
(2012)
Nat. Genet.
, vol.44
, pp. 148-156
-
-
Bonn, S.1
Zinzen, R.P.2
Girardot, C.3
Gustafson, E.H.4
Perez-Gonzalez, A.5
Delhomme, N.6
Ghavi-Helm, Y.7
Wilczyński, B.8
Riddell, A.9
Furlong, E.E.10
-
5
-
-
84861529303
-
Enhancers as information integration hubs in development: lessons from genomics
-
Buecker C., Wysocka J. Enhancers as information integration hubs in development: lessons from genomics. Trends Genet. 2012, 28:276-284.
-
(2012)
Trends Genet.
, vol.28
, pp. 276-284
-
-
Buecker, C.1
Wysocka, J.2
-
6
-
-
79551655285
-
Functional and mechanistic diversity of distal transcription enhancers
-
Bulger M., Groudine M. Functional and mechanistic diversity of distal transcription enhancers. Cell 2011, 144:327-339.
-
(2011)
Cell
, vol.144
, pp. 327-339
-
-
Bulger, M.1
Groudine, M.2
-
7
-
-
79955019522
-
PLU-1/JARID1B/KDM5B is required for embryonic survival and contributes to cell proliferation in the mammary gland and in ER+ breast cancer cells
-
Catchpole S., Spencer-Dene B., Hall D., Santangelo S., Rosewell I., Guenatri M., Beatson R., Scibetta A.G., Burchell J.M., Taylor-Papadimitriou J. PLU-1/JARID1B/KDM5B is required for embryonic survival and contributes to cell proliferation in the mammary gland and in ER+ breast cancer cells. Int. J. Oncol. 2011, 38:1267-1277.
-
(2011)
Int. J. Oncol.
, vol.38
, pp. 1267-1277
-
-
Catchpole, S.1
Spencer-Dene, B.2
Hall, D.3
Santangelo, S.4
Rosewell, I.5
Guenatri, M.6
Beatson, R.7
Scibetta, A.G.8
Burchell, J.M.9
Taylor-Papadimitriou, J.10
-
8
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
Chen X., Xu H., Yuan P., Fang F., Huss M., Vega V.B., Wong E., Orlov Y.L., Zhang W., Jiang J., et al. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 2008, 133:1106-1117.
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
-
9
-
-
84861868041
-
H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence
-
Chicas A., Kapoor A., Wang X., Aksoy O., Evertts A.G., Zhang M.Q., Garcia B.A., Bernstein E., Lowe S.W. H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence. Proc. Natl. Acad. Sci. USA 2012, 109:8971-8976.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 8971-8976
-
-
Chicas, A.1
Kapoor, A.2
Wang, X.3
Aksoy, O.4
Evertts, A.G.5
Zhang, M.Q.6
Garcia, B.A.7
Bernstein, E.8
Lowe, S.W.9
-
10
-
-
43249102851
-
Erasing the methyl mark: histone demethylases at the center of cellular differentiation and disease
-
Cloos P.A., Christensen J., Agger K., Helin K. Erasing the methyl mark: histone demethylases at the center of cellular differentiation and disease. Genes Dev. 2008, 22:1115-1140.
-
(2008)
Genes Dev.
, vol.22
, pp. 1115-1140
-
-
Cloos, P.A.1
Christensen, J.2
Agger, K.3
Helin, K.4
-
11
-
-
24944484633
-
Niche-independent symmetrical self-renewal of a mammalian tissue stem cell
-
Conti L., Pollard S.M., Gorba T., Reitano E., Toselli M., Biella G., Sun Y., Sanzone S., Ying Q.L., Cattaneo E., Smith A. Niche-independent symmetrical self-renewal of a mammalian tissue stem cell. PLoS Biol. 2005, 3:e283.
-
(2005)
PLoS Biol.
, vol.3
-
-
Conti, L.1
Pollard, S.M.2
Gorba, T.3
Reitano, E.4
Toselli, M.5
Biella, G.6
Sun, Y.7
Sanzone, S.8
Ying, Q.L.9
Cattaneo, E.10
Smith, A.11
-
12
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core L.J., Waterfall J.J., Lis J.T. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 2008, 322:1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
13
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton M.P., Cheng A.W., Welstead G.G., Kooistra T., Carey B.W., Steine E.J., Hanna J., Lodato M.A., Frampton G.M., Sharp P.A., et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 2010, 107:21931-21936.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
14
-
-
75149188170
-
Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes
-
Dalgliesh G.L., Furge K., Greenman C., Chen L., Bignell G., Butler A., Davies H., Edkins S., Hardy C., Latimer C., et al. Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes. Nature 2010, 463:360-363.
-
(2010)
Nature
, vol.463
, pp. 360-363
-
-
Dalgliesh, G.L.1
Furge, K.2
Greenman, C.3
Chen, L.4
Bignell, G.5
Butler, A.6
Davies, H.7
Edkins, S.8
Hardy, C.9
Latimer, C.10
-
15
-
-
77952908743
-
A large fraction of extragenic RNA pol II transcription sites overlap enhancers
-
De Santa F., Barozzi I., Mietton F., Ghisletti S., Polletti S., Tusi B.K., Muller H., Ragoussis J., Wei C.L., Natoli G. A large fraction of extragenic RNA pol II transcription sites overlap enhancers. PLoS Biol. 2010, 8:e1000384.
-
(2010)
PLoS Biol.
, vol.8
-
-
De Santa, F.1
Barozzi, I.2
Mietton, F.3
Ghisletti, S.4
Polletti, S.5
Tusi, B.K.6
Muller, H.7
Ragoussis, J.8
Wei, C.L.9
Natoli, G.10
-
16
-
-
49349092791
-
The histone demethylase KDM5b/JARID1b plays a role in cell fate decisions by blocking terminal differentiation
-
Dey B.K., Stalker L., Schnerch A., Bhatia M., Taylor-Papidimitriou J., Wynder C. The histone demethylase KDM5b/JARID1b plays a role in cell fate decisions by blocking terminal differentiation. Mol. Cell. Biol. 2008, 28:5312-5327.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 5312-5327
-
-
Dey, B.K.1
Stalker, L.2
Schnerch, A.3
Bhatia, M.4
Taylor-Papidimitriou, J.5
Wynder, C.6
-
17
-
-
23744433852
-
A generic tool for biotinylation of tagged proteins in transgenic mice
-
Driegen S., Ferreira R., van Zon A., Strouboulis J., Jaegle M., Grosveld F., Philipsen S., Meijer D. A generic tool for biotinylation of tagged proteins in transgenic mice. Transgenic Res. 2005, 14:477-482.
-
(2005)
Transgenic Res.
, vol.14
, pp. 477-482
-
-
Driegen, S.1
Ferreira, R.2
van Zon, A.3
Strouboulis, J.4
Jaegle, M.5
Grosveld, F.6
Philipsen, S.7
Meijer, D.8
-
18
-
-
34247253752
-
The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase
-
Eissenberg J.C., Lee M.G., Schneider J., Ilvarsonn A., Shiekhattar R., Shilatifard A. The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase. Nat. Struct. Mol. Biol. 2007, 14:344-346.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 344-346
-
-
Eissenberg, J.C.1
Lee, M.G.2
Schneider, J.3
Ilvarsonn, A.4
Shiekhattar, R.5
Shilatifard, A.6
-
19
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
Ernst J., Kheradpour P., Mikkelsen T.S., Shoresh N., Ward L.D., Epstein C.B., Zhang X., Wang L., Issner R., Coyne M., et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 2011, 473:43-49.
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
-
20
-
-
77955497653
-
Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation
-
Fang R., Barbera A.J., Xu Y., Rutenberg M., Leonor T., Bi Q., Lan F., Mei P., Yuan G.C., Lian C., et al. Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation. Mol. Cell 2010, 39:222-233.
-
(2010)
Mol. Cell
, vol.39
, pp. 222-233
-
-
Fang, R.1
Barbera, A.J.2
Xu, Y.3
Rutenberg, M.4
Leonor, T.5
Bi, Q.6
Lan, F.7
Mei, P.8
Yuan, G.C.9
Lian, C.10
-
21
-
-
0033786540
-
A screen for new trithorax group genes identified little imaginal discs, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2
-
Gildea J.J., Lopez R., Shearn A. A screen for new trithorax group genes identified little imaginal discs, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2. Genetics 2000, 156:645-663.
-
(2000)
Genetics
, vol.156
, pp. 645-663
-
-
Gildea, J.J.1
Lopez, R.2
Shearn, A.3
-
22
-
-
33749166029
-
Distinct functions of dispersed GATA factor complexes at an endogenous gene locus
-
Grass J.A., Jing H., Kim S.I., Martowicz M.L., Pal S., Blobel G.A., Bresnick E.H. Distinct functions of dispersed GATA factor complexes at an endogenous gene locus. Mol. Cell. Biol. 2006, 26:7056-7067.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 7056-7067
-
-
Grass, J.A.1
Jing, H.2
Kim, S.I.3
Martowicz, M.L.4
Pal, S.5
Blobel, G.A.6
Bresnick, E.H.7
-
23
-
-
84859893371
-
Histone methylation: a dynamic mark in health, disease and inheritance
-
Greer E.L., Shi Y. Histone methylation: a dynamic mark in health, disease and inheritance. Nat. Rev. Genet. 2012, 13:343-357.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 343-357
-
-
Greer, E.L.1
Shi, Y.2
-
24
-
-
34250782620
-
RBP2 is an MRG15 complex component and down-regulates intragenic histone H3 lysine 4 methylation
-
Hayakawa T., Ohtani Y., Hayakawa N., Shinmyozu K., Saito M., Ishikawa F., Nakayama J. RBP2 is an MRG15 complex component and down-regulates intragenic histone H3 lysine 4 methylation. Genes Cells 2007, 12:811-826.
-
(2007)
Genes Cells
, vol.12
, pp. 811-826
-
-
Hayakawa, T.1
Ohtani, Y.2
Hayakawa, N.3
Shinmyozu, K.4
Saito, M.5
Ishikawa, F.6
Nakayama, J.7
-
25
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman N.D., Stuart R.K., Hon G., Fu Y., Ching C.W., Hawkins R.D., Barrera L.O., Van Calcar S., Qu C., Ching K.A., et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 2007, 39:311-318.
-
(2007)
Nat. Genet.
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
-
26
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman N.D., Hon G.C., Hawkins R.D., Kheradpour P., Stark A., Harp L.F., Ye Z., Lee L.K., Stuart R.K., Ching C.W., et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 2009, 459:108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
27
-
-
84870490787
-
Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4
-
Herz H.M., Mohan M., Garruss A.S., Liang K., Takahashi Y.H., Mickey K., Voets O., Verrijzer C.P., Shilatifard A. Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4. Genes Dev. 2012, 26:2604-2620.
-
(2012)
Genes Dev.
, vol.26
, pp. 2604-2620
-
-
Herz, H.M.1
Mohan, M.2
Garruss, A.S.3
Liang, K.4
Takahashi, Y.H.5
Mickey, K.6
Voets, O.7
Verrijzer, C.P.8
Shilatifard, A.9
-
28
-
-
33947302685
-
The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases
-
Iwase S., Lan F., Bayliss P., de la Torre-Ubieta L., Huarte M., Qi H.H., Whetstine J.R., Bonni A., Roberts T.M., Shi Y. The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases. Cell 2007, 128:1077-1088.
-
(2007)
Cell
, vol.128
, pp. 1077-1088
-
-
Iwase, S.1
Lan, F.2
Bayliss, P.3
de la Torre-Ubieta, L.4
Huarte, M.5
Qi, H.H.6
Whetstine, J.R.7
Bonni, A.8
Roberts, T.M.9
Shi, Y.10
-
29
-
-
82955198464
-
Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation
-
Jeong K.W., Kim K., Situ A.J., Ulmer T.S., An W., Stallcup M.R. Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation. Nat. Struct. Mol. Biol. 2011, 18:1358-1365.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 1358-1365
-
-
Jeong, K.W.1
Kim, K.2
Situ, A.J.3
Ulmer, T.S.4
An, W.5
Stallcup, M.R.6
-
30
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim T.K., Hemberg M., Gray J.M., Costa A.M., Bear D.M., Wu J., Harmin D.A., Laptewicz M., Barbara-Haley K., Kuersten S., et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 2010, 465:182-187.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
-
31
-
-
84855180224
-
Initiating RNA polymerase II and TIPs as hallmarks of enhancer activity and tissue-specificity
-
Koch F., Andrau J.C. Initiating RNA polymerase II and TIPs as hallmarks of enhancer activity and tissue-specificity. Transcription 2011, 2:263-268.
-
(2011)
Transcription
, vol.2
, pp. 263-268
-
-
Koch, F.1
Andrau, J.C.2
-
32
-
-
84862778066
-
Intragenic enhancers act as alternative promoters
-
Kowalczyk M.S., Hughes J.R., Garrick D., Lynch M.D., Sharpe J.A., Sloane-Stanley J.A., McGowan S.J., De Gobbi M., Hosseini M., Vernimmen D., et al. Intragenic enhancers act as alternative promoters. Mol. Cell 2012, 45:447-458.
-
(2012)
Mol. Cell
, vol.45
, pp. 447-458
-
-
Kowalczyk, M.S.1
Hughes, J.R.2
Garrick, D.3
Lynch, M.D.4
Sharpe, J.A.5
Sloane-Stanley, J.A.6
McGowan, S.J.7
De Gobbi, M.8
Hosseini, M.9
Vernimmen, D.10
-
33
-
-
35348993743
-
Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination
-
Lee M.G., Villa R., Trojer P., Norman J., Yan K.P., Reinberg D., Di Croce L., Shiekhattar R. Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination. Science 2007, 318:447-450.
-
(2007)
Science
, vol.318
, pp. 447-450
-
-
Lee, M.G.1
Villa, R.2
Trojer, P.3
Norman, J.4
Yan, K.P.5
Reinberg, D.6
Di Croce, L.7
Shiekhattar, R.8
-
34
-
-
80051998696
-
Loss of the retinoblastoma binding protein 2 (RBP2) histone demethylase suppresses tumorigenesis in mice lacking Rb1 or Men1
-
Lin W., Cao J., Liu J., Beshiri M.L., Fujiwara Y., Francis J., Cherniack A.D., Geisen C., Blair L.P., Zou M.R., et al. Loss of the retinoblastoma binding protein 2 (RBP2) histone demethylase suppresses tumorigenesis in mice lacking Rb1 or Men1. Proc. Natl. Acad. Sci. USA 2011, 108:13379-13386.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 13379-13386
-
-
Lin, W.1
Cao, J.2
Liu, J.3
Beshiri, M.L.4
Fujiwara, Y.5
Francis, J.6
Cherniack, A.D.7
Geisen, C.8
Blair, L.P.9
Zou, M.R.10
-
35
-
-
49349114931
-
Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation
-
Lopez-Bigas N., Kisiel T.A., Dewaal D.C., Holmes K.B., Volkert T.L., Gupta S., Love J., Murray H.L., Young R.A., Benevolenskaya E.V. Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation. Mol. Cell 2008, 31:520-530.
-
(2008)
Mol. Cell
, vol.31
, pp. 520-530
-
-
Lopez-Bigas, N.1
Kisiel, T.A.2
Dewaal, D.C.3
Holmes, K.B.4
Volkert, T.L.5
Gupta, S.6
Love, J.7
Murray, H.L.8
Young, R.A.9
Benevolenskaya, E.V.10
-
36
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
McLean C.Y., Bristor D., Hiller M., Clarke S.L., Schaar B.T., Lowe C.B., Wenger A.M., Bejerano G. GREAT improves functional interpretation of cis-regulatory regions. Nat. Biotechnol. 2010, 28:495-501.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
37
-
-
79954562232
-
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
-
Min I.M., Waterfall J.J., Core L.J., Munroe R.J., Schimenti J., Lis J.T. Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev. 2011, 25:742-754.
-
(2011)
Genes Dev.
, vol.25
, pp. 742-754
-
-
Min, I.M.1
Waterfall, J.J.2
Core, L.J.3
Munroe, R.J.4
Schimenti, J.5
Lis, J.T.6
-
38
-
-
79955676389
-
ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions
-
Muiño J.M., Kaufmann K., van Ham R.C., Angenent G.C., Krajewski P. ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions. Plant Methods 2011, 7:11.
-
(2011)
Plant Methods
, vol.7
, pp. 11
-
-
Muiño, J.M.1
Kaufmann, K.2
van Ham, R.C.3
Angenent, G.C.4
Krajewski, P.5
-
39
-
-
80053203114
-
The histone demethylase Jarid1b (Kdm5b) is a novel component of the Rb pathway and associates with E2f-target genes in MEFs during senescence
-
Nijwening J.H., Geutjes E.J., Bernards R., Beijersbergen R.L. The histone demethylase Jarid1b (Kdm5b) is a novel component of the Rb pathway and associates with E2f-target genes in MEFs during senescence. PLoS ONE 2011, 6:e25235.
-
(2011)
PLoS ONE
, vol.6
-
-
Nijwening, J.H.1
Geutjes, E.J.2
Bernards, R.3
Beijersbergen, R.L.4
-
40
-
-
79952901680
-
Enhancer function: new insights into the regulation of tissue-specific gene expression
-
Ong C.T., Corces V.G. Enhancer function: new insights into the regulation of tissue-specific gene expression. Nat. Rev. Genet. 2011, 12:283-293.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 283-293
-
-
Ong, C.T.1
Corces, V.G.2
-
41
-
-
80054910846
-
H3K4 tri-methylation provides an epigenetic signature of active enhancers
-
Pekowska A., Benoukraf T., Zacarias-Cabeza J., Belhocine M., Koch F., Holota H., Imbert J., Andrau J.C., Ferrier P., Spicuglia S. H3K4 tri-methylation provides an epigenetic signature of active enhancers. EMBO J. 2011, 30:4198-4210.
-
(2011)
EMBO J.
, vol.30
, pp. 4198-4210
-
-
Pekowska, A.1
Benoukraf, T.2
Zacarias-Cabeza, J.3
Belhocine, M.4
Koch, F.5
Holota, H.6
Imbert, J.7
Andrau, J.C.8
Ferrier, P.9
Spicuglia, S.10
-
42
-
-
72249119297
-
Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells
-
Peng J.C., Valouev A., Swigut T., Zhang J., Zhao Y., Sidow A., Wysocka J. Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells. Cell 2009, 139:1290-1302.
-
(2009)
Cell
, vol.139
, pp. 1290-1302
-
-
Peng, J.C.1
Valouev, A.2
Swigut, T.3
Zhang, J.4
Zhao, Y.5
Sidow, A.6
Wysocka, J.7
-
43
-
-
42949095911
-
BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals
-
Poser I., Sarov M., Hutchins J.R., Hériché J.K., Toyoda Y., Pozniakovsky A., Weigl D., Nitzsche A., Hegemann B., Bird A.W., et al. BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals. Nat. Methods 2008, 5:409-415.
-
(2008)
Nat. Methods
, vol.5
, pp. 409-415
-
-
Poser, I.1
Sarov, M.2
Hutchins, J.R.3
Hériché, J.K.4
Toyoda, Y.5
Pozniakovsky, A.6
Weigl, D.7
Nitzsche, A.8
Hegemann, B.9
Bird, A.W.10
-
44
-
-
77952502408
-
A temporarily distinct subpopulation of slow-cycling melanoma cells is required for continuous tumor growth
-
Roesch A., Fukunaga-Kalabis M., Schmidt E.C., Zabierowski S.E., Brafford P.A., Vultur A., Basu D., Gimotty P., Vogt T., Herlyn M. A temporarily distinct subpopulation of slow-cycling melanoma cells is required for continuous tumor growth. Cell 2010, 141:583-594.
-
(2010)
Cell
, vol.141
, pp. 583-594
-
-
Roesch, A.1
Fukunaga-Kalabis, M.2
Schmidt, E.C.3
Zabierowski, S.E.4
Brafford, P.A.5
Vultur, A.6
Basu, D.7
Gimotty, P.8
Vogt, T.9
Herlyn, M.10
-
45
-
-
80053978849
-
Comparative analysis of algorithms for next-generation sequencing read alignment
-
Ruffalo M., LaFramboise T., Koyutürk M. Comparative analysis of algorithms for next-generation sequencing read alignment. Bioinformatics 2011, 27:2790-2796.
-
(2011)
Bioinformatics
, vol.27
, pp. 2790-2796
-
-
Ruffalo, M.1
LaFramboise, T.2
Koyutürk, M.3
-
46
-
-
33846019277
-
Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark
-
Ruthenburg A.J., Allis C.D., Wysocka J. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Mol. Cell 2007, 25:15-30.
-
(2007)
Mol. Cell
, vol.25
, pp. 15-30
-
-
Ruthenburg, A.J.1
Allis, C.D.2
Wysocka, J.3
-
47
-
-
81255160602
-
Jarid1b targets genes regulating development and is involved in neural differentiation
-
Schmitz S.U., Albert M., Malatesta M., Morey L., Johansen J.V., Bak M., Tommerup N., Abarrategui I., Helin K. Jarid1b targets genes regulating development and is involved in neural differentiation. EMBO J. 2011, 30:4586-4600.
-
(2011)
EMBO J.
, vol.30
, pp. 4586-4600
-
-
Schmitz, S.U.1
Albert, M.2
Malatesta, M.3
Morey, L.4
Johansen, J.V.5
Bak, M.6
Tommerup, N.7
Abarrategui, I.8
Helin, K.9
-
48
-
-
77957344798
-
CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression
-
Schnetz M.P., Handoko L., Akhtar-Zaidi B., Bartels C.F., Pereira C.F., Fisher A.G., Adams D.J., Flicek P., Crawford G.E., Laframboise T., et al. CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression. PLoS Genet. 2010, 6:e1001023.
-
(2010)
PLoS Genet.
, vol.6
-
-
Schnetz, M.P.1
Handoko, L.2
Akhtar-Zaidi, B.3
Bartels, C.F.4
Pereira, C.F.5
Fisher, A.G.6
Adams, D.J.7
Flicek, P.8
Crawford, G.E.9
Laframboise, T.10
-
49
-
-
33947152396
-
The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth
-
Secombe J., Li L., Carlos L., Eisenman R.N. The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth. Genes Dev. 2007, 21:537-551.
-
(2007)
Genes Dev.
, vol.21
, pp. 537-551
-
-
Secombe, J.1
Li, L.2
Carlos, L.3
Eisenman, R.N.4
-
50
-
-
77950809059
-
A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations
-
Sharma S.V., Lee D.Y., Li B., Quinlan M.P., Takahashi F., Maheswaran S., McDermott U., Azizian N., Zou L., Fischbach M.A., et al. A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations. Cell 2010, 141:69-80.
-
(2010)
Cell
, vol.141
, pp. 69-80
-
-
Sharma, S.V.1
Lee, D.Y.2
Li, B.3
Quinlan, M.P.4
Takahashi, F.5
Maheswaran, S.6
McDermott, U.7
Azizian, N.8
Zou, L.9
Fischbach, M.A.10
-
51
-
-
44649139771
-
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation
-
Shilatifard A. Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation. Curr. Opin. Cell Biol. 2008, 20:341-348.
-
(2008)
Curr. Opin. Cell Biol.
, vol.20
, pp. 341-348
-
-
Shilatifard, A.1
-
52
-
-
34249900454
-
The histone H3K4 demethylase SMCX links REST target genes to X-linked mental retardation
-
Tahiliani M., Mei P., Fang R., Leonor T., Rutenberg M., Shimizu F., Li J., Rao A., Shi Y. The histone H3K4 demethylase SMCX links REST target genes to X-linked mental retardation. Nature 2007, 447:601-605.
-
(2007)
Nature
, vol.447
, pp. 601-605
-
-
Tahiliani, M.1
Mei, P.2
Fang, R.3
Leonor, T.4
Rutenberg, M.5
Shimizu, F.6
Li, J.7
Rao, A.8
Shi, Y.9
-
53
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman R.E., Rynes E., Humbert R., Vierstra J., Maurano M.T., Haugen E., Sheffield N.C., Stergachis A.B., Wang H., Vernot B., et al. The accessible chromatin landscape of the human genome. Nature 2012, 489:75-82.
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
-
54
-
-
33644860985
-
The use of biotin tagging in Saccharomyces cerevisiae improves the sensitivity of chromatin immunoprecipitation
-
van Werven F.J., Timmers H.T. The use of biotin tagging in Saccharomyces cerevisiae improves the sensitivity of chromatin immunoprecipitation. Nucleic Acids Res. 2006, 34:e33.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Van Werven, F.J.1
Timmers, H.T.2
-
55
-
-
78650582970
-
Histone lysine methylation and demethylation pathways in cancer
-
Varier R.A., Timmers H.T. Histone lysine methylation and demethylation pathways in cancer. Biochim. Biophys. Acta 2011, 1815:75-89.
-
(2011)
Biochim. Biophys. Acta
, vol.1815
, pp. 75-89
-
-
Varier, R.A.1
Timmers, H.T.2
-
56
-
-
34848911602
-
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4
-
Vermeulen M., Mulder K.W., Denissov S., Pijnappel W.W., van Schaik F.M., Varier R.A., Baltissen M.P., Stunnenberg H.G., Mann M., Timmers H.T. Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell 2007, 131:58-69.
-
(2007)
Cell
, vol.131
, pp. 58-69
-
-
Vermeulen, M.1
Mulder, K.W.2
Denissov, S.3
Pijnappel, W.W.4
van Schaik, F.M.5
Varier, R.A.6
Baltissen, M.P.7
Stunnenberg, H.G.8
Mann, M.9
Timmers, H.T.10
-
57
-
-
69449102464
-
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
-
Wang Z., Zang C., Cui K., Schones D.E., Barski A., Peng W., Zhao K. Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 2009, 138:1019-1031.
-
(2009)
Cell
, vol.138
, pp. 1019-1031
-
-
Wang, Z.1
Zang, C.2
Cui, K.3
Schones, D.E.4
Barski, A.5
Peng, W.6
Zhao, K.7
-
58
-
-
84856962477
-
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
-
Whyte W.A., Bilodeau S., Orlando D.A., Hoke H.A., Frampton G.M., Foster C.T., Cowley S.M., Young R.A. Enhancer decommissioning by LSD1 during embryonic stem cell differentiation. Nature 2012, 482:221-225.
-
(2012)
Nature
, vol.482
, pp. 221-225
-
-
Whyte, W.A.1
Bilodeau, S.2
Orlando, D.A.3
Hoke, H.A.4
Frampton, G.M.5
Foster, C.T.6
Cowley, S.M.7
Young, R.A.8
-
59
-
-
33745839365
-
A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling
-
Wysocka J., Swigut T., Xiao H., Milne T.A., Kwon S.Y., Landry J., Kauer M., Tackett A.J., Chait B.T., Badenhorst P., et al. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling. Nature 2006, 442:86-90.
-
(2006)
Nature
, vol.442
, pp. 86-90
-
-
Wysocka, J.1
Swigut, T.2
Xiao, H.3
Milne, T.A.4
Kwon, S.Y.5
Landry, J.6
Kauer, M.7
Tackett, A.J.8
Chait, B.T.9
Badenhorst, P.10
-
60
-
-
79955008193
-
KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription
-
Xie L., Pelz C., Wang W., Bashar A., Varlamova O., Shadle S., Impey S. KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription. EMBO J. 2011, 30:1473-1484.
-
(2011)
EMBO J.
, vol.30
, pp. 1473-1484
-
-
Xie, L.1
Pelz, C.2
Wang, W.3
Bashar, A.4
Varlamova, O.5
Shadle, S.6
Impey, S.7
-
61
-
-
79953699973
-
SeqMINER: an integrated ChIP-seq data interpretation platform
-
Ye T., Krebs A.R., Choukrallah M.A., Keime C., Plewniak F., Davidson I., Tora L. seqMINER: an integrated ChIP-seq data interpretation platform. Nucleic Acids Res. 2011, 39:e35.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Ye, T.1
Krebs, A.R.2
Choukrallah, M.A.3
Keime, C.4
Plewniak, F.5
Davidson, I.6
Tora, L.7
-
62
-
-
80455144479
-
Pioneer transcription factors: establishing competence for gene expression
-
Zaret K.S., Carroll J.S. Pioneer transcription factors: establishing competence for gene expression. Genes Dev. 2011, 25:2227-2241.
-
(2011)
Genes Dev.
, vol.25
, pp. 2227-2241
-
-
Zaret, K.S.1
Carroll, J.S.2
-
63
-
-
77449086407
-
In vivo residue-specific histone methylation dynamics
-
Zee B.M., Levin R.S., Xu B., LeRoy G., Wingreen N.S., Garcia B.A. In vivo residue-specific histone methylation dynamics. J. Biol. Chem. 2010, 285:3341-3350.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 3341-3350
-
-
Zee, B.M.1
Levin, R.S.2
Xu, B.3
LeRoy, G.4
Wingreen, N.S.5
Garcia, B.A.6
-
64
-
-
80051564877
-
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
-
Zentner G.E., Tesar P.J., Scacheri P.C. Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res. 2011, 21:1273-1283.
-
(2011)
Genome Res.
, vol.21
, pp. 1273-1283
-
-
Zentner, G.E.1
Tesar, P.J.2
Scacheri, P.C.3
|