메뉴 건너뛰기




Volumn 34, Issue 4, 2006, Pages

The use of biotin tagging in Saccharomyces cerevisiae improves the sensitivity of chromatin immunoprecipitation

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; BIOTIN; DNA BINDING PROTEIN; FUNGAL DNA; LEXA PROTEIN; LIGASE; RNA POLYMERASE II; STREPTAVIDIN; TRANSCRIPTION FACTOR; BACTERIAL PROTEIN; BIRA PROTEIN, E COLI; DNA; ESCHERICHIA COLI PROTEIN; LEXA PROTEIN, BACTERIA; REPRESSOR PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; SERINE PROTEINASE;

EID: 33644860985     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl003     Document Type: Article
Times cited : (49)

References (35)
  • 2
    • 0036909437 scopus 로고    scopus 로고
    • Multi-protein complexes in eukaryotic gene transcription
    • Martinez,E. (2002) Multi-protein complexes in eukaryotic gene transcription. Plant Mol. Biol., 50, 925-947.
    • (2002) Plant Mol. Biol. , vol.50 , pp. 925-947
    • Martinez, E.1
  • 3
    • 14544280757 scopus 로고    scopus 로고
    • Transcriptional regulation and the role of diverse coactivators in animal cells
    • Roeder,R.G. (2005) Transcriptional regulation and the role of diverse coactivators in animal cells. FEBS Lett., 579, 909-915.
    • (2005) FEBS Lett. , vol.579 , pp. 909-915
    • Roeder, R.G.1
  • 4
    • 0024258763 scopus 로고
    • Gene regulation. A hit-and-run mechanism for transcriptional activation?
    • Schaffner,W. (1988) Gene regulation. A hit-and-run mechanism for transcriptional activation? Nature, 336, 427-428.
    • (1988) Nature , vol.336 , pp. 427-428
    • Schaffner, W.1
  • 5
    • 0026669182 scopus 로고
    • Interplay of steroid hormone receptors and transcription factors on the mouse mammary tumor virus promoter
    • Truss,M., Chalepakis,G. and Beato,M. (1992) Interplay of steroid hormone receptors and transcription factors on the mouse mammary tumor virus promoter. J. Steroid Biochem. Mol. Biol., 43, 365-378.
    • (1992) J. Steroid Biochem. Mol. Biol. , vol.43 , pp. 365-378
    • Truss, M.1    Chalepakis, G.2    Beato, M.3
  • 6
    • 0033289860 scopus 로고    scopus 로고
    • Mapping DNA interaction sites of chromosomal proteins. Crosslinking studies in yeast
    • Hecht,A., Strahl-Bolsinger,S. and Grunstein,M. (1999) Mapping DNA interaction sites of chromosomal proteins. Crosslinking studies in yeast. Methods Mol. Biol., 119, 469-479.
    • (1999) Methods Mol. Biol. , vol.119 , pp. 469-479
    • Hecht, A.1    Strahl-Bolsinger, S.2    Grunstein, M.3
  • 7
    • 0033288055 scopus 로고    scopus 로고
    • Mapping DNA target sites of chromatin proteins in vivo by formaldehyde crosslinking
    • Strutt,H. and Paro,R. (1999) Mapping DNA target sites of chromatin proteins in vivo by formaldehyde crosslinking. Methods Mol. Biol., 119, 455-467.
    • (1999) Methods Mol. Biol. , vol.119 , pp. 455-467
    • Strutt, H.1    Paro, R.2
  • 9
    • 0037087576 scopus 로고    scopus 로고
    • Dynamics of global histone acetylation and deacetylation in vivo: Rapid restoration of normal histone acetylation status upon removal of activators and repressors
    • Katan-Khaykovich,Y. and Struhl,K. (2002) Dynamics of global histone acetylation and deacetylation in vivo: Rapid restoration of normal histone acetylation status upon removal of activators and repressors. Genes Dev., 16, 743-752.
    • (2002) Genes Dev. , vol.16 , pp. 743-752
    • Katan-Khaykovich, Y.1    Struhl, K.2
  • 10
    • 2642544592 scopus 로고    scopus 로고
    • Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
    • Metivier,R., Penot,G., Hubner,M.R., Reid,G., Brand,H., Kos,M. and Gannon,F. (2003) Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell, 115, 751-763.
    • (2003) Cell , vol.115 , pp. 751-763
    • Metivier, R.1    Penot, G.2    Hubner, M.R.3    Reid, G.4    Brand, H.5    Kos, M.6    Gannon, F.7
  • 11
    • 0033637703 scopus 로고    scopus 로고
    • Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription
    • Shang,Y., Hu,X., DiRenzo,J., Lazar,M.A. and Brown,M. (2000) Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription. Cell, 103, 843-852.
    • (2000) Cell , vol.103 , pp. 843-852
    • Shang, Y.1    Hu, X.2    DiRenzo, J.3    Lazar, M.A.4    Brown, M.5
  • 12
    • 2442557808 scopus 로고    scopus 로고
    • Cellular stress alters the transcriptional properties of promoter-bound Mot1-TBP complexes
    • Geisberg,J.V. and Struhl,K. (2004) Cellular stress alters the transcriptional properties of promoter-bound Mot1-TBP complexes. Mol. Cell, 14, 479-489.
    • (2004) Mol. Cell , vol.14 , pp. 479-489
    • Geisberg, J.V.1    Struhl, K.2
  • 15
    • 0942287129 scopus 로고    scopus 로고
    • Versatile protein biotinylation strategies for potential high-throughput proteomics
    • Lue,R.Y., Chen,G.Y., Hu,Y., Zhu,Q. and Yao,S.Q. (2004) Versatile protein biotinylation strategies for potential high-throughput proteomics. J. Am. Chem. Soc., 126, 1055-1062.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 1055-1062
    • Lue, R.Y.1    Chen, G.Y.2    Hu, Y.3    Zhu, Q.4    Yao, S.Q.5
  • 17
    • 0029092610 scopus 로고
    • Correlation of two-hybrid affinity data with in vitro measurements
    • Estojak,J., Brent,R. and Golemis,E.A. (1995) Correlation of two-hybrid affinity data with in vitro measurements. Mol. Cell. Biol., 15, 5820-5829.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 5820-5829
    • Estojak, J.1    Brent, R.2    Golemis, E.A.3
  • 18
    • 0029994841 scopus 로고    scopus 로고
    • A new efficient gene disruption cassette for repeated use in budding yeast
    • Guldener,U., Heck,S., Fielder,T., Beinhauer,J. and Hegemann,J.H. (1996) A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res., 24, 2519-2524.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2519-2524
    • Guldener, U.1    Heck, S.2    Fielder, T.3    Beinhauer, J.4    Hegemann, J.H.5
  • 19
    • 13444274743 scopus 로고    scopus 로고
    • New modules for the repeated internal and N-terminal epitope tagging of genes in Saccharomyces cerevisiae
    • Gauss,R., Trautwein,M., Sommer,T. and Spang,A. (2004) New modules for the repeated internal and N-terminal epitope tagging of genes in Saccharomyces cerevisiae. Yeast, 22, 1-12.
    • (2004) Yeast , vol.22 , pp. 1-12
    • Gauss, R.1    Trautwein, M.2    Sommer, T.3    Spang, A.4
  • 20
    • 0028954118 scopus 로고
    • Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure
    • Gietz,R.D., Schiestl,R.H., Willems,A.R. and Woods,R.A. (1995) Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure. Yeast, 11, 355-360.
    • (1995) Yeast , vol.11 , pp. 355-360
    • Gietz, R.D.1    Schiestl, R.H.2    Willems, A.R.3    Woods, R.A.4
  • 21
    • 0029147734 scopus 로고
    • Four subunits that are shared by the three classes of RNA polymerase are functionally interchangeable between Homo sapiens and Saccharomyces cerevisiae
    • Shpakovski,G.V., Acker,J., Wintzerith,M., Lacroix,J.F., Thuriaux,P. and Vigneron,M. (1995) Four subunits that are shared by the three classes of RNA polymerase are functionally interchangeable between Homo sapiens and Saccharomyces cerevisiae. Mol. Cell. Biol., 15, 4702-4710.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 4702-4710
    • Shpakovski, G.V.1    Acker, J.2    Wintzerith, M.3    Lacroix, J.F.4    Thuriaux, P.5    Vigneron, M.6
  • 22
    • 0024669291 scopus 로고
    • A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
    • Sikorski,R.S. and Hieter,P. (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics., 122, 19-27.
    • (1989) Genetics. , vol.122 , pp. 19-27
    • Sikorski, R.S.1    Hieter, P.2
  • 23
    • 0034733591 scopus 로고    scopus 로고
    • Rapid and reliable protein extraction from yeast
    • Kushnirov,V.V. (2000) Rapid and reliable protein extraction from yeast. Yeast, 16, 857-860.
    • (2000) Yeast , vol.16 , pp. 857-860
    • Kushnirov, V.V.1
  • 24
    • 20344392427 scopus 로고    scopus 로고
    • Differential requirement of SAGA subunits for Mot1p and Taf1p recruitment in gene activation
    • van Oevelen,C.J., van Teeffelen,H.A. and Timmers,H.T. (2005) Differential requirement of SAGA subunits for Mot1p and Taf1p recruitment in gene activation. Mol. Cell. Biol., 25, 4863-4872.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 4863-4872
    • van Oevelen, C.J.1    van Teeffelen, H.A.2    Timmers, H.T.3
  • 25
    • 0032917076 scopus 로고    scopus 로고
    • A minimal peptide substrate in biotin holoenzyme synthetase-catalyzed biotinylation
    • Beckett,D., Kovaleva,E. and Schatz,P.J. (1999) A minimal peptide substrate in biotin holoenzyme synthetase-catalyzed biotinylation. Protein Sci., 8, 921-929.
    • (1999) Protein Sci. , vol.8 , pp. 921-929
    • Beckett, D.1    Kovaleva, E.2    Schatz, P.J.3
  • 26
    • 0028322197 scopus 로고
    • Regulation of pyruvate carboxylase isozyme (PYC1, PYC2) gene expression in Saccharomyces cerevisiae during fermentative and nonfermentative growth
    • Brewster,N.K., Val,D.L., Walker,M.E. and Wallace,J.C. (1994) Regulation of pyruvate carboxylase isozyme (PYC1, PYC2) gene expression in Saccharomyces cerevisiae during fermentative and nonfermentative growth. Arch. Biochem. Biophys., 311, 62-71.
    • (1994) Arch. Biochem. Biophys. , vol.311 , pp. 62-71
    • Brewster, N.K.1    Val, D.L.2    Walker, M.E.3    Wallace, J.C.4
  • 27
    • 5644259583 scopus 로고    scopus 로고
    • Identification of the tRNA-binding protein Arc1p as a novel target of in vivo biotinylation in Saccharomyces cerevisiae
    • Kim,H.S., Hoja,U., Stolz,J., Sauer,G. and Schweizer,E. (2004) Identification of the tRNA-binding protein Arc1p as a novel target of in vivo biotinylation in Saccharomyces cerevisiae. J. Biol. Chem., 279, 42445-42452.
    • (2004) J. Biol. Chem. , vol.279 , pp. 42445-42452
    • Kim, H.S.1    Hoja, U.2    Stolz, J.3    Sauer, G.4    Schweizer, E.5
  • 28
    • 2542478792 scopus 로고    scopus 로고
    • HFA1 encoding an organelle-specific acetyl-CoA carboxylase controls mitochondrial fatty acid synthesis in Saccharomyces cerevisiae
    • Hoja,U., Marthol,S., Hofmann,J., Stegner,S., Schulz,R., Meier,S., Greiner,E. and Schweizer,E. (2004) HFA1 encoding an organelle-specific acetyl-CoA carboxylase controls mitochondrial fatty acid synthesis in Saccharomyces cerevisiae. J. Biol. Chem., 279, 21779-21786.
    • (2004) J. Biol. Chem. , vol.279 , pp. 21779-21786
    • Hoja, U.1    Marthol, S.2    Hofmann, J.3    Stegner, S.4    Schulz, R.5    Meier, S.6    Greiner, E.7    Schweizer, E.8
  • 29
    • 0027289677 scopus 로고
    • Acetyl-CoA carboxylase from yeast is an essential enzyme and is regulated by factors that control phospholipid metabolism
    • Hasslacher,M., Ivessa,A.S., Paltauf,F. and Kohlwein,S.D. (1993) Acetyl-CoA carboxylase from yeast is an essential enzyme and is regulated by factors that control phospholipid metabolism. J. Biol. Chem., 268, 10946-10952.
    • (1993) J. Biol. Chem. , vol.268 , pp. 10946-10952
    • Hasslacher, M.1    Ivessa, A.S.2    Paltauf, F.3    Kohlwein, S.D.4
  • 31
    • 0019473758 scopus 로고
    • Genetic and biochemical characterization of the birA gene and its product: Evidence for a direct role of biotin holoenzyme synthetase in repression of the biotin operon in Escherichia coli
    • Barker,D.F. and Campbell,A.M. (1981) Genetic and biochemical characterization of the birA gene and its product: Evidence for a direct role of biotin holoenzyme synthetase in repression of the biotin operon in Escherichia coli. J. Mol. Biol., 146, 469-492.
    • (1981) J. Mol. Biol. , vol.146 , pp. 469-492
    • Barker, D.F.1    Campbell, A.M.2
  • 32
    • 0033542436 scopus 로고    scopus 로고
    • Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme
    • Kuras,L. and Struhl,K. (1999) Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature, 399, 609-613.
    • (1999) Nature , vol.399 , pp. 609-613
    • Kuras, L.1    Struhl, K.2
  • 34
    • 1942521308 scopus 로고    scopus 로고
    • Immobilization of biotinylated DNA on 2-D streptavidin crystals
    • Crucifix,C., Uhring,M. and Schultz,P. (2004) Immobilization of biotinylated DNA on 2-D streptavidin crystals. J. Struct. Biol., 146, 441-451.
    • (2004) J. Struct. Biol. , vol.146 , pp. 441-451
    • Crucifix, C.1    Uhring, M.2    Schultz, P.3
  • 35
    • 0024977417 scopus 로고
    • Elevated recombination rates in transcriptionally active DNA
    • Thomas,B.J. and Rothstein,R. (1989) Elevated recombination rates in transcriptionally active DNA. Cell, 56, 619-630.
    • (1989) Cell , vol.56 , pp. 619-630
    • Thomas, B.J.1    Rothstein, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.