메뉴 건너뛰기




Volumn 41, Issue 7, 2013, Pages 4000-4014

Modulation of gene expression via overlapping binding sites exerted by ZNF143, Notch1 and THAP11

Author keywords

[No Author keywords available]

Indexed keywords

NOTCH1 RECEPTOR; SBS1 PROTEIN; SBS2 PROTEIN; THAP11 PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; ZNF143 PROTEIN;

EID: 84876588265     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt088     Document Type: Article
Times cited : (51)

References (50)
  • 1
    • 62549128139 scopus 로고    scopus 로고
    • A census of human transcription factors: Function expression and evolution
    • Vaquerizas, J.M., Kummerfeld, S.K., Teichmann, S.A. and Luscombe, N.M. (2009) A census of human transcription factors: function, expression and evolution. Nat. Rev. Genet., 10, 252-263.
    • (2009) Nat. Rev. Genet , vol.10 , pp. 252-263
    • Vaquerizas, J.M.1    Kummerfeld, S.K.2    Teichmann, S.A.3    Luscombe, N.M.4
  • 2
    • 84858440747 scopus 로고    scopus 로고
    • Regulatory elements: Metazoan promoters: Emerging characteristics and insights into transcriptional regulation
    • Lenhard, B., Sandelin, A. and Carninci, P. (2012) Regulatory elements: Metazoan promoters: emerging characteristics and insights into transcriptional regulation. Nat. Rev. Genet., 13, 233-245.
    • (2012) Nat. Rev. Genet , vol.13 , pp. 233-245
    • Lenhard, B.1    Sandelin, A.2    Carninci, P.3
  • 3
    • 84865249952 scopus 로고    scopus 로고
    • Transcription factors: From enhancer binding to developmental control
    • Spitz, F. and Furlong, E.E.M. (2012) Transcription factors: from enhancer binding to developmental control. Nat. Rev. Genet., 13, 613-626.
    • (2012) Nat. Rev. Genet , vol.13 , pp. 613-626
    • Spitz, F.1    Furlong, E.E.M.2
  • 4
    • 79953044960 scopus 로고    scopus 로고
    • Genome-wide transcription factor binding: Beyond direct target regulation
    • Macquarrie, K.L., Fong, A.P., Morse, R.H. and Tapscott, S.J. (2011) Genome-wide transcription factor binding: beyond direct target regulation. Trends Genet., 27, 141-148.
    • (2011) Trends Genet , vol.27 , pp. 141-148
    • MacQuarrie, K.L.1    Fong, A.P.2    Morse, R.H.3    Tapscott, S.J.4
  • 6
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Consortium T.E.P. Consortium T.E.P. data analysis coordination O.C. data production D.P.L. data analysis L.A. group W. scientific management N.P.M. steering committee P.I. Boise State University and University of North Carolina at Chapel Hill Proteomics groups (data production and analysis), Broad Institute Group (data production and analysis) et al.
    • Consortium, T.E.P., Consortium, T.E.P., data analysis coordination, O.C., data production, D.P.L., data analysis, L.A., group, W., scientific management, N.P.M., steering committee, P.I., Boise State University and University of North Carolina at Chapel Hill Proteomics groups (data production and analysis), Broad Institute Group (data production and analysis) et al. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 488, 57-74.
    • (2012) Nature , vol.488 , pp. 57-74
  • 7
    • 33845311536 scopus 로고    scopus 로고
    • Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping
    • DOI 10.1101/gr.5321506
    • Walhout, A.J.M. (2006) Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping. Genome Res., 16, 1445-1454. (Pubitemid 44878484)
    • (2006) Genome Research , vol.16 , Issue.12 , pp. 1445-1454
    • Walhout, A.J.M.1
  • 8
    • 68949213578 scopus 로고    scopus 로고
    • Insights from genomic profiling of transcription factors
    • Farnham, P.J. (2009) Insights from genomic profiling of transcription factors. Nat. Rev. Genet., 10, 605-616.
    • (2009) Nat. Rev. Genet , vol.10 , pp. 605-616
    • Farnham, P.J.1
  • 10
    • 0031026368 scopus 로고    scopus 로고
    • Staf, a promiscuous activator for enhanced transcription by RNA polymerases II and III
    • DOI 10.1093/emboj/16.1.173
    • Schaub, M., Myslinski, E., Schuster, C., Krol, A. and Carbon, P. (1997) Staf, a promiscuous activator for enhanced transcription by RNA polymerases II and III. EMBO J., 16, 173-181. (Pubitemid 27032860)
    • (1997) EMBO Journal , vol.16 , Issue.1 , pp. 173-181
    • Schaub, M.1    Myslinski, E.2    Schuster, C.3    Krol, A.4    Carbon, P.5
  • 11
    • 0035875333 scopus 로고    scopus 로고
    • An unusually compact external promoter for RNA polymerase III transcription of the human H1RNA gene
    • Myslinski, E., Amé , J.C., Krol, A. and Carbon, P. (2001) An unusually compact external promoter for RNA polymerase III transcription of the human H1RNA gene. Nucleic Acids Res., 29, 2502-2509. (Pubitemid 32600305)
    • (2001) Nucleic Acids Research , vol.29 , Issue.12 , pp. 2502-2509
    • Myslinski, E.1    Ame, J.-C.2    Krol, A.3    Carbon, P.4
  • 12
    • 77449145877 scopus 로고    scopus 로고
    • The scaRNA2 is produced by an independent transcription unit and its processing is directed by the encoding region
    • Gérard, M.-A., Myslinski, E., Chylak, N., Baudrey, S., Krol, A. and Carbon, P. (2010) The scaRNA2 is produced by an independent transcription unit and its processing is directed by the encoding region. Nucleic Acids Res., 38, 370-381.
    • (2010) Nucleic Acids Res , vol.38 , pp. 370-381
    • Gérard, M.-A.1    Myslinski, E.2    Chylak, N.3    Baudrey, S.4    Krol, A.5    Carbon, P.6
  • 13
    • 79955525353 scopus 로고    scopus 로고
    • Adhesion-dependent Skp2 transcription requires selenocysteine tRNA gene transcription-activating factor (STAF)
    • Hernandez-Negrete, I., Sala-Newby, G.B., Perl, A., Kunkel, G.R., Newby, A.C. and Bond, M. (2011) Adhesion-dependent Skp2 transcription requires selenocysteine tRNA gene transcription-activating factor (STAF). Biochem. J., 436, 133-143.
    • (2011) Biochem. J , vol.436 , pp. 133-143
    • Hernandez-Negrete, I.1    Sala-Newby, G.B.2    Perl, A.3    Kunkel, G.R.4    Newby, A.C.5    Bond, M.6
  • 14
    • 34548484823 scopus 로고    scopus 로고
    • Transcription factor hStaf/ZNF143 is required for expression of the human TFAM gene
    • DOI 10.1016/j.gene.2007.07.011, PII S0378111907003800
    • Gérard, M.-A., Krol, A. and Carbon, P. (2007) Transcription factor hStaf/ZNF143 is required for expression of the human TFAM gene. Gene, 401, 145-153. (Pubitemid 47379523)
    • (2007) Gene , vol.401 , Issue.1-2 , pp. 145-153
    • Gerard, M.-A.1    Krol, A.2    Carbon, P.3
  • 15
    • 34250852875 scopus 로고    scopus 로고
    • Transcription of the human cell cycle regulated BUB1B gene requires hStaf/ZNF143
    • DOI 10.1093/nar/gkm239
    • Myslinski, E., Gérard, M.-A., Krol, A. and Carbon, P. (2007) Transcription of the human cell cycle regulated BUB1B gene requires hStaf/ZNF143. Nucleic Acids Res., 35, 3453-3464. (Pubitemid 47073606)
    • (2007) Nucleic Acids Research , vol.35 , Issue.10 , pp. 3453-3464
    • Myslinski, E.1    Gerard, M.-A.2    Krol, A.3    Carbon, P.4
  • 16
    • 0032555502 scopus 로고    scopus 로고
    • ZNF76 and ZNF143 are two human homologs of the transcriptional activator Staf
    • DOI 10.1074/jbc.273.34.21998
    • Myslinski, E., Krol, A. and Carbon, P. (1998) ZNF76 and ZNF143 are two human homologs of the transcriptional activator Staf. J. Biol. Chem., 273, 21998-22006. (Pubitemid 28405380)
    • (1998) Journal of Biological Chemistry , vol.273 , Issue.34 , pp. 21998-22006
    • Myslinski, E.1    Krol, A.2    Carbon, P.3
  • 17
    • 34547766645 scopus 로고    scopus 로고
    • ZNF143 interacts with p73 and is involved in cisplatin resistance through the transcriptional regulation of DNA repair genes
    • DOI 10.1038/sj.onc.1210326, PII 1210326
    • Wakasugi, T., Izumi, H., Uchiumi, T., Suzuki, H., Arao, T., Nishio, K. and Kohno, K. (2007) ZNF143 interacts with p73 and is involved in cisplatin resistance through the transcriptional regulation of DNA repair genes. Oncogene, 26, 5194-5203. (Pubitemid 47237622)
    • (2007) Oncogene , vol.26 , Issue.36 , pp. 5194-5203
    • Wakasugi, T.1    Izumi, H.2    Uchiumi, T.3    Suzuki, H.4    Arao, T.5    Nishio, K.6    Kohno, K.7
  • 18
    • 84856061011 scopus 로고    scopus 로고
    • The transcriptional activator ZNF143 is essential for normal development in zebrafish
    • Halbig, K.M., Lekven, A.C. and Kunkel, G.R. (2012) The transcriptional activator ZNF143 is essential for normal development in zebrafish. BMC Mol Biol., 13, 3.
    • (2012) BMC Mol Biol , vol.13 , pp. 3
    • Halbig, K.M.1    Lekven, A.C.2    Kunkel, G.R.3
  • 19
    • 56249128625 scopus 로고    scopus 로고
    • Zfp143 regulates Nanog through modulation of Oct4 binding
    • Chen, X., Fang, F., Liou, Y.-C. and Ng, H.-H. (2008) Zfp143 regulates Nanog through modulation of Oct4 binding. Stem Cells, 26, 2759-2767.
    • (2008) Stem Cells , vol.26 , pp. 2759-2767
    • Chen, X.1    Fang, F.2    Liou, Y.-C.3    Ng, H.-H.4
  • 21
    • 64249172203 scopus 로고    scopus 로고
    • The canonical Notch signaling pathway: Unfolding the activation mechanism
    • Kopan, R. and Ilagan, M.X.G. (2009) The canonical Notch signaling pathway: unfolding the activation mechanism. Cell, 137, 216-233.
    • (2009) Cell , vol.137 , pp. 216-233
    • Kopan, R.1    Ilagan, M.X.G.2
  • 22
    • 79955460636 scopus 로고    scopus 로고
    • Notch signalling in solid tumours: A little bit of everything but not all the time
    • Ranganathan, P., Weaver, K.L. and Capobianco, A.J. (2011) Notch signalling in solid tumours: a little bit of everything but not all the time. Nat. Rev. Cancer., 11, 338-351.
    • (2011) Nat. Rev. Cancer , vol.11 , pp. 338-351
    • Ranganathan, P.1    Weaver, K.L.2    Capobianco, A.J.3
  • 23
    • 33646366173 scopus 로고    scopus 로고
    • Notch 1 activation in the molecular pathogenesis of T-cell acute lymphoblastic leukaemia
    • Grabher, C., Boehmer., von, H. and Look, A.T. (2006) Notch 1 activation in the molecular pathogenesis of T-cell acute lymphoblastic leukaemia. Nat. Rev. Cancer., 6, 347-359.
    • (2006) Nat. Rev. Cancer , vol.6 , pp. 347-359
    • Von Boehmer, G.C.H.1    Look, A.T.2
  • 24
    • 33747623018 scopus 로고    scopus 로고
    • Notch signalling: A simple pathway becomes complex
    • DOI 10.1038/nrm2009, PII NRM2009
    • Bray, S.J. (2006) Notch signalling: a simple pathway becomes complex. Nat. Rev. Mol. Cell Biol., 7, 678-689. (Pubitemid 44268213)
    • (2006) Nature Reviews Molecular Cell Biology , vol.7 , Issue.9 , pp. 678-689
    • Bray, S.J.1
  • 26
    • 84861376860 scopus 로고    scopus 로고
    • A Transcriptional Regulatory Role of the THAP11-HCF-1 Complex in Colon Cancer Cell Function
    • Parker, J.B., Palchaudhuri, S., Yin, H., Wei, J. and Chakravarti, D. (2012) A Transcriptional Regulatory Role of the THAP11-HCF-1 Complex in Colon Cancer Cell Function. Mol. Cell. Biol., 32, 1654-1670.
    • (2012) Mol. Cell. Biol , vol.32 , pp. 1654-1670
    • Parker, J.B.1    Palchaudhuri, S.2    Yin, H.3    Wei, J.4    Chakravarti, D.5
  • 27
    • 45449093213 scopus 로고    scopus 로고
    • Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells
    • DOI 10.1016/j.cell.2008.05.047, PII S0092867408007502
    • Dejosez, M., Krumenacker, J.S., Zitur, L.J., Passeri, M., Chu, L.-F., Songyang, Z., Thomson, J.A. and Zwaka, T.P. (2008) Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells. Cell, 133, 1162-1174. (Pubitemid 351852919)
    • (2008) Cell , vol.133 , Issue.7 , pp. 1162-1174
    • Dejosez, M.1    Krumenacker, J.S.2    Zitur, L.J.3    Passeri, M.4    Chu, L.-F.5    Songyang, Z.6    Thomson, J.A.7    Zwaka, T.P.8
  • 28
    • 79955611426 scopus 로고    scopus 로고
    • Genome-wide evidence for an essential role of the human Staf/ZNF143 transcription factor in bidirectional transcription
    • Anno, Y.-N., Myslinski, E., Ngondo-Mbongo, R.P., Krol, A., Poch, O., Lecompte, O. and Carbon, P. (2011) Genome-wide evidence for an essential role of the human Staf/ZNF143 transcription factor in bidirectional transcription. Nucleic Acids Res., 39, 3116-3127.
    • (2011) Nucleic Acids Res , vol.39 , pp. 3116-3127
    • Anno, Y.-N.1    Myslinski, E.2    Ngondo-Mbongo, R.P.3    Krol, A.4    Poch, O.5    Lecompte, O.6    Carbon, P.7
  • 29
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 30
    • 21644471586 scopus 로고    scopus 로고
    • A somatic knockout of CBF1 in a human B-cell line reveals that induction of CD21 and CCR7 by EBNA-2 is strictly CBF1 dependent and that downregulation of immunoglobulin M is partially CBF1 independent
    • DOI 10.1128/JVI.79.14.8784-8792.2005
    • Maier, S., Santak, M., Mantik, A., Grabusic, K., Kremmer, E., Hammerschmidt, W. and Kempkes, B. (2005) A somatic knockout of CBF1 in a human B-cell line reveals that induction of CD21 and CCR7 by EBNA-2 is strictly CBF1 dependent and that downregulation of immunoglobulin M is partially CBF1 independent. J. Virol., 79, 8784-8792. (Pubitemid 40934789)
    • (2005) Journal of Virology , vol.79 , Issue.14 , pp. 8784-8792
    • Maier, S.1    Santak, M.2    Mantik, A.3    Grabusic, K.4    Kremmer, E.5    Hammerschmidt, W.6    Kempkes, B.7
  • 35
    • 0035920155 scopus 로고    scopus 로고
    • Small nuclear RNA genes: A model system to study fundamental mechanisms of transcription
    • Hernandez, N. (2001) Small nuclear RNA genes: a model system to study fundamental mechanisms of transcription. J. Biol. Chem., 276, 26733-26736.
    • (2001) J. Biol. Chem. , vol.276 , pp. 26733-26736
    • Hernandez, N.1
  • 36
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D.W., Sherman, B.T. and Lempicki, R.A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc., 4, 44-57.
    • (2009) Nat. Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 38
    • 5644261273 scopus 로고    scopus 로고
    • ZNF76, a novel transcriptional repressor targeting TATA-binding protein, is modulated by sumoylation
    • DOI 10.1074/jbc.M407287200
    • Zheng, G. and Yang, Y.-C. (2004) ZNF76, a novel transcriptional repressor targeting TATA-binding protein, is modulated by sumoylation. J. Biol. Chem., 279, 42410-42421. (Pubitemid 39372123)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.41 , pp. 42410-42421
    • Zheng, G.1    Yang, Y.-C.2
  • 39
    • 34547662962 scopus 로고    scopus 로고
    • Trawler: De novo regulatory motif discovery pipeline for chromatin immunoprecipitation
    • DOI 10.1038/nmeth1061, PII NMETH1061
    • Ettwiller, L., Paten, B., Ramialison, M., Birney, E. and Wittbrodt, J. (2007) Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation. Nat. Methods, 4, 563-565. (Pubitemid 47214774)
    • (2007) Nature Methods , vol.4 , Issue.7 , pp. 563-565
    • Ettwiller, L.1    Paten, B.2    Ramialison, M.3    Birney, E.4    Wittbrodt, J.5
  • 40
    • 34249026300 scopus 로고    scopus 로고
    • High-Resolution Profiling of Histone Methylations in the Human Genome
    • DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
    • Barski, A., Cuddapah, S., Cui, K., Roh, T.-Y., Schones, D.E., Wang, Z., Wei, G., Chepelev, I. and Zhao, K. (2007) High-resolution profiling of histone methylations in the human genome. Cell, 129, 823-837. (Pubitemid 46802390)
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.-Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 42
    • 0031921255 scopus 로고    scopus 로고
    • Two distinct domains in staf to selectively activate small nuclear RNA- type and mRNA promoters
    • Schuster, C., Krol, A. and Carbon, P. (1998) Two distinct domains in Staf to selectively activate small nuclear RNA-type and mRNA promoters. Mol. Cell Biol., 18, 2650-2658. (Pubitemid 28183434)
    • (1998) Molecular and Cellular Biology , vol.18 , Issue.5 , pp. 2650-2658
    • Schuster, C.1    Krol, A.2    Carbon, P.3
  • 43
    • 80555142988 scopus 로고    scopus 로고
    • Coevolution of retroelements and tandem zinc finger genes
    • Thomas, J.H. and Schneider, S. (2011) Coevolution of retroelements and tandem zinc finger genes. Genome Res., 21, 1800-1812.
    • (2011) Genome Res , vol.21 , pp. 1800-1812
    • Thomas, J.H.1    Schneider, S.2
  • 44
    • 58949084539 scopus 로고    scopus 로고
    • Adaptive evolution in zinc finger transcription factors
    • Emerson, R.O. and Thomas, J.H. (2009) Adaptive evolution in zinc finger transcription factors. PLoS Genet., 5, e1000325.
    • (2009) PLoS Genet , vol.5
    • Emerson, R.O.1    Thomas, J.H.2
  • 45
    • 84870671983 scopus 로고    scopus 로고
    • Genomic study of RNA polymerase II and III SNAPc-bound promoters reveals a gene transcribed by both enzymes and a broad use of common activators
    • James Faresse, N., Canella, D., Praz, V., Michaud, J., Romascano, D. and Hernandez, N. (2012) Genomic study of RNA polymerase II and III SNAPc-bound promoters reveals a gene transcribed by both enzymes and a broad use of common activators. PLoS Genet., 8, e1003028.
    • (2012) PLoS Genet , vol.8
    • James Faresse, N.1    Canella, D.2    Praz, V.3    Michaud, J.4    Romascano, D.5    Hernandez, N.6
  • 46
    • 79959373574 scopus 로고    scopus 로고
    • Transcription by RNA polymerase III: More complex than we thought
    • White, R.J. (2011) Transcription by RNA polymerase III: more complex than we thought. Nat. Rev. Genet., 12, 459-463.
    • (2011) Nat. Rev. Genet , vol.12 , pp. 459-463
    • White, R.J.1
  • 47
    • 15244358503 scopus 로고    scopus 로고
    • Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
    • DOI 10.1038/nature03441
    • Xie, X., Lu, J., Kulbokas, E.J., Golub, T.R., Mootha, V., Lindblad-Toh, K., Lander, E.S. and Kellis, M. (2005) Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature, 434, 338-345. (Pubitemid 40469170)
    • (2005) Nature , vol.434 , Issue.7031 , pp. 338-345
    • Xie, X.1    Lu, J.2    Kulbokas, E.J.3    Golub, T.R.4    Mootha, V.5    Lindblad-Toh, K.6    Lander, E.S.7    Kellis, M.8
  • 48
    • 80052569569 scopus 로고    scopus 로고
    • Genome-wide analysis reveals conserved and divergent features of Notch1/RBPJ binding in human and murine T-lymphoblastic leukemia cells
    • Wang, H., Zou, J., Zhao, B., Johannsen, E., Ashworth, T., Wong, H., Pear, W.S., Schug, J., Blacklow, S.C., Arnett, K.L. et al. (2011) Genome-wide analysis reveals conserved and divergent features of Notch1/RBPJ binding in human and murine T-lymphoblastic leukemia cells. Proc. Natl Acad. Sci. USA, 108, 14908-14913.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 14908-14913
    • Wang, H.1    Zou, J.2    Zhao, B.3    Johannsen, E.4    Ashworth, T.5    Wong, H.6    Pear, W.S.7    Schug, J.8    Blacklow, S.C.9    Arnett, K.L.10
  • 50
    • 0037301560 scopus 로고    scopus 로고
    • Origin of a substantial fraction of human regulatory sequences from transposable elements
    • DOI 10.1016/S0168-9525(02)00006-9, PII S0168952502000069
    • Jordan, I.K., Rogozin, I.B., Glazko, G.V. and Koonin, E.V. (2003) Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet., 19, 68-72. (Pubitemid 36120660)
    • (2003) Trends in Genetics , vol.19 , Issue.2 , pp. 68-72
    • Jordan, I.K.1    Rogozin, I.B.2    Glazko, G.V.3    Koonin, E.V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.