Transcription factor hStaf/ZNF143 is required for expression of the human TFAM gene

Gene

Volumn 401, Issue 1-2, 2007, Pages 145-153

  Gérard, Marie Aline ^a   Krol, Alain ^a   Carbon, Philippe ^a  

^a INST DE BIOL MOLEC ET CELLULAIRE   (France)

Author keywords

Mitochondria; mtTFA; Staf; ZNF143

Indexed keywords

MITOCHONDRIAL DNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR HSTAF; TRANSCRIPTION FACTOR NRF1; TRANSCRIPTION FACTOR NRF2; TRANSCRIPTION FACTOR SP1; TRANSCRIPTION FACTOR ZNF 143; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; BINDING ASSAY; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; GENE CONSTRUCT; GENE EXPRESSION; GENETIC CONSERVATION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION; TRANSIENT EXPRESSION;

AMINO ACID SEQUENCE; ANIMALS; BETA-GALACTOSIDASE; BINDING SITES; CERCOPITHECUS AETHIOPS; CHROMATIN IMMUNOPRECIPITATION; CLUSTER ANALYSIS; COS CELLS; DNA-BINDING PROTEINS; GENE EXPRESSION; GENES, REPORTER; HUMANS; LUCIFERASES; MITOCHONDRIAL PROTEINS; MOLECULAR SEQUENCE DATA; MUTATION; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; SEQUENCE HOMOLOGY, AMINO ACID; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS; TRANSFECTION;

MAMMALIA;

EID: 34548484823     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.07.011     Document Type: Article

References (33)

1. Alam T.I., et al. Human mitochondrial DNA is packaged with TFAM. Nucleic Acids Res. 31 (2003) 1640-1645
2. Barski O.A., Papusha V.Z., Kunkel G.R., and Gabbay K.H. Regulation of aldehyde reductase expression by STAF and CHOP. Genomics 83 (2004) 119-129
3. Bonawitz N.D., Clayton D.A., and Shadel G.S. Initiation and beyond: multiple functions of the human mitochondrial transcription machinery. Mol. Cell 24 (2006) 813-825
4. Choi Y.S., Lee H.K., and Pak Y.K. Characterization of the 5′-flanking region of the rat gene for mitochondrial transcription factor A (Tfam). Biochim. Biophys. Acta 1574 (2002) 200-204
5. Di Leva F., et al. Human synaptobrevin-like 1 gene basal transcription is regulated through the interaction of selenocysteine tRNA gene transcription activating factor-zinc finger 143 factors with evolutionary conserved cis-elements. J. Biol. Chem. 279 (2004) 7734-7739
6. Dong X., Ghoshal K., Majumder S., Yadav S.P., and Jacob S.T. Mitochondrial transcription factor A and its downstream targets are up-regulated in a rat hepatoma. J. Biol. Chem. 277 (2002) 43309-43318
7. Falkenberg M., et al. Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA. Nat. Genet. 31 (2002) 289-294
8. Fisher R.P., and Clayton D.A. Purification and characterization of human mitochondrial transcription factor 1. Mol. Cell. Biol. 8 (1988) 3496-3509
9. Fisher R.P., Topper J.N., and Clayton D.A. Promoter selection in human mitochondria involves binding of a transcription factor to orientation-independent upstream regulatory elements. Cell 50 (1987) 247-258
10. Fisher R.P., Parisi M.A., and Clayton D.A. Flexible recognition of rapidly evolving promoter sequences by mitochondrial transcription factor 1. Genes Dev. 3 (1989) 2202-2217
11. Grossman C.E., Qian Y., Banki K., and Perl A. ZNF143 mediates basal and tissue-specific expression of human transaldolase. J. Biol. Chem. 279 (2004) 12190-12205
12. Ishiguchi H., et al. ZNF143 activates gene expression in response to DNA damage and binds to cisplatin-modified DNA. Int. J. Cancer 111 (2004) 900-909
13. Kubota H., Yokota S., Yanagi H., and Yura T. Transcriptional regulation of the mouse cytosolic chaperonin subunit gene Ccta/t-complex polypeptide 1 by selenocysteine tRNA gene transcription activating factor family zinc finger proteins. J. Biol. Chem. 275 (2000) 28641-28648
14. Li L., He S., Sun J.M., and Davie J.R. Gene regulation by Sp1 and Sp3. Biochem. Cell. Biol. 82 (2004) 460-471
15. Mach C.M., Hargrove B.W., and Kunkel G.R. The Small RNA gene activator protein, SphI postoctamer homology-binding factor/selenocysteine tRNA gene transcription activating factor, stimulates transcription of the human interferon regulatory factor-3 gene. J. Biol. Chem. 277 (2002) 4853-4858
16. Myslinski E., Gerard M.A., Krol A., and Carbon P. A genome scale location analysis of human Staf/ZNF143-binding sites suggests a widespread role for human Staf/ZNF143 in mammalian promoters. J. Biol. Chem. 281 (2006) 39953-39962
17. Myslinski E., Gerard M.A., Krol A., and Carbon P. Transcription of the human cell cycle regulated BUB1B gene requires hStaf/ZNF143. Nucleic Acids Res. 35 (2007) 3453-3464
18. Myslinski E., Krol A., and Carbon P. Optimal tRNA((Ser)Sec) gene activity requires an upstream SPH motif. Nucleic Acids Res. 20 (1992) 203-209
19. Myslinski E., Krol A., and Carbon P. ZNF76 and ZNF143 are two human homologs of the transcriptional activator Staf. J. Biol. Chem. 273 (1998) 21998-22006
20. Myslinski E., Krol A., and Carbon P. Characterization of snRNA and snRNA-type genes in the pufferfish Fugu rubripes. Gene 330 (2004) 149-158
21. Parisi M.A., and Clayton D.A. Similarity of human mitochondrial transcription factor 1 to high mobility group proteins. Science 252 (1991) 965-969
22. Piantadosi C.A., and Suliman H.B. Mitochondrial transcription factor A induction by redox activation of nuclear respiratory factor 1. J. Biol. Chem. 281 (2006) 324-333
23. Quandt K., Frech K., Karas H., Wingender E., and Werner T. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23 (1995) 4878-4884
24. Saur D., Seidler B., Paehge H., Schusdziarra V., and Allescher H.D. Complex regulation of human neuronal nitric-oxide synthase exon 1c gene transcription. Essential role of Sp and ZNF family members of transcription factors. J. Biol. Chem. 277 (2002) 25798-25814
25. Schaub M., Krol A., and Carbon P. Flexible zinc finger requirement for binding of the transcriptional activator staf to U6 small nuclear RNA and tRNA(Sec) promoters. J. Biol. Chem. 274 (1999) 24241-24249
26. Schaub M., Myslinski E., Schuster C., Krol A., and Carbon P. Staf, a promiscuous activator for enhanced transcription by RNA polymerases II and III. EMBO J. 16 (1997) 173-181
27. Schuster C., Krol A., and Carbon P. Two distinct domains in Staf to selectively activate small nuclear RNA-type and mRNA promoters. Mol. Cell. Biol. 18 (1998) 2650-2658
28. Schuster C., Myslinski E., Krol A., and Carbon P. Staf, a novel zinc finger protein that activates the RNA polymerase III promoter of the selenocysteine tRNA gene. EMBO J. 14 (1995) 3777-3787
29. Suzuki Y., Yamashita R., Nakai K., and Sugano S. DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. Nucleic Acids Res. 30 (2002) 328-331
30. Takamatsu C., et al. Regulation of mitochondrial D-loops by transcription factor A and single-stranded DNA-binding protein. EMBO Rep. 3 (2002) 451-456
31. Virbasius J.V., and Scarpulla R.C. Activation of the human mitochondrial transcription factor A gene by nuclear respiratory factors: a potential regulatory link between nuclear and mitochondrial gene expression in organelle biogenesis. Proc. Natl. Acad. Sci. U. S. A. 91 (1994) 1309-1313
32. Weinmann A.S., and Farnham P.J. Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation. Methods 26 (2002) 37-47
33. Yamashita R., et al. DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. Nucleic Acids Res. 34 (2006) D86-D89