The scaRNA2 is produced by an independent transcription unit and its processing is directed by the encoding region

Nucleic Acids Research

Volumn 38, Issue 2, 2009, Pages 370-381

  Gérard, Marie Aline ^a   Myslinski, Evelyne ^a   Chylak, Natassia ^a   Baudrey, Stéphanie ^a   Krol, Alain ^a   Carbon, Philippe ^a  

^a UNIVERSITÉ DE STRASBOURG   (France)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN ZNF143; RNA; RNA POLYMERASE II; SCARNA2; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; GUIDE RNA; TRANSACTIVATOR PROTEIN; ZNF143 PROTEIN, HUMAN;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; GENETIC REGULATION; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN FUNCTION; RNA PROCESSING; RNA SEQUENCE; BINDING SITE; BIOSYNTHESIS; GENETICS; HELA CELL; METABOLISM;

MAMMALIA;

BINDING SITES; HELA CELLS; HUMANS; PROMOTER REGIONS, GENETIC; RNA; RNA 3' END PROCESSING; RNA POLYMERASE II; RNA, GUIDE; TRANS-ACTIVATORS; TRANSCRIPTION, GENETIC;

EID: 77449145877     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp988     Document Type: Article

References (47)

1. Limbach,P.A., Crain,P.F. and McCloskey,J.A. (1994) Summary: the modified nucleosides of RNA. Nucleic Acids Res., 22, 2183-2196.
2. Maden,B.E. and Hughes,J.M. (1997) Eukaryotic ribosomal RNA: the recent excitement in the nucleotide modification problem. Chromosoma, 105, 391-400.
3. Smith,C.M. and Steitz,J.A. (1997) Sno storm in the nucleolus: new roles for myriad small RNPs. Cell, 89, 669-672.
4. Reichow,S.L., Hamma,T., Ferre-D'Amare,A.R. and Varani,G. (2007) The structure and function of small nucleolar ribonucleoproteins. Nucleic Acids Res., 35, 1452-1464.
5. Kiss-Laszlo,Z., Henry,Y., Bachellerie,J.P., Caizergues-Ferrer,M. and Kiss,T. (1996) Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell, 85, 1077-1088.
6. Tycowski,K.T., Smith,C.M., Shu,M.D. and Steitz,J.A. (1996) A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus. Proc. Natl Acad. Sci. USA, 93, 14480-14485.
7. Ganot,P., Bortolin,M.L. and Kiss,T. (1997) Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell, 89, 799-809.
8. Ni,J., Tien,A.L. and Fournier,M.J. (1997) Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell, 89, 565-573.
9. Meier,U.T. (2005) The many facets of H/ACA ribonucleoproteins. Chromosoma, 114, 1-14.
10. Hernandez,N. (2001) Small nuclear RNA genes: a model system to study fundamental mechanisms of transcription. J. Biol. Chem., 276, 26733-26736.
11. Schramm,L. and Hernandez,N. (2002) Recruitment of RNA polymerase III to its target promoters. Genes Dev., 16, 2593-2620.
12. Kiss,T. (2004) Biogenesis of small nuclear RNPs. J. Cell Sci., 117, 5949-5951.
13. Cuello,P., Boyd,D.C., Dye,M.J., Proudfoot,N.J. and Murphy,S. (1999) Transcription of the human U2 snRNA genes continues beyond the 30 box in vivo. EMBO J., 18, 2867-2877.
14. Medlin,J.E., Uguen,P., Taylor,A., Bentley,D.L. and Murphy,S. (2003) The C-terminal domain of pol II and a DRB-sensitive kinase are required for 30 processing of U2 snRNA. EMBO J., 22, 925-934.
15. Uguen,P. and Murphy,S. (2003) The 3' ends of human pre-snRNAs are produced by RNA polymerase II CTD-dependent RNA processing. EMBO J., 22, 4544-4554.
16. Baillat,D., Hakimi,M.A., Naar,A.M., Shilatifard,A., Cooch,N. and Shiekhattar,R. (2005) Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II. Cell, 123, 265-276.
17. Darzacq,X., Jady,B.E., Verheggen,C., Kiss,A.M., Bertrand,E. and Kiss,T. (2002) Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. EMBO J., 21, 2746-2756.
18. Kiss,A.M., Jady,B.E., Darzacq,X., Verheggen,C., Bertrand,E. and Kiss,T. (2002) A Cajal body-specific pseudouridylation guide RNA is composed of two box H/ACA snoRNA-like domains. Nucleic Acids Res., 30, 4643-4649.
19. Kiss,A.M., Jady,B.E., Bertrand,E. and Kiss,T. (2004) Human box H/ACA pseudouridylation guide RNA machinery. Mol. Cell Biol., 24, 5797-5807.
20. Richard,P., Darzacq,X., Bertrand,E., Jady,B.E., Verheggen,C. and Kiss,T. (2003) A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs. EMBO J., 22, 4283-4293.
21. Tycowski,K.T., Shu,M.D., Kukoyi,A. and Steitz,J.A. (2009) A conserved WD40 protein binds the Cajal body localization signal of scaRNP particles. Mol. Cell, 34, 47-57.
22. Filipowicz,W. and Pogacic,V. (2002) Biogenesis of small nucleolar ribonucleoproteins. Curr. Opin. Cell Biol., 14, 319-327.
23. Ach,R.A. and Weiner,A.M. (1991) Cooperation between CCAAT and octamer motifs in the distal sequence element of the rat U3 small nucleolar RNA promoter. Nucleic Acids Res., 19, 4209-4218.
24. Schuster,C., Myslinski,E., Krol,A. and Carbon,P. (1995) Staf, a novel zinc finger protein that activates the RNA polymerase III promoter of the selenocysteine tRNA gene. EMBO J., 14, 3777-3787.
25. Schaub,M., Myslinski,E., Schuster,C., Krol,A. and Carbon,P. (1997) Staf, a promiscuous activator for enhanced transcription by RNA polymerases II and III. EMBO J., 16, 173-181.
26. Tycowski,K.T., Aab,A. and Steitz,J.A. (2004) Guide RNAs with 5′ caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. Curr. Biol., 14, 1985-1995.
27. Lobo,S.M. and Hernandez,N. (1989) A 7 bp mutation converts a human RNA polymerase II snRNA promoter into an RNA polymerase III promoter. Cell, 58, 55-67.
28. Myslinski,E., Ame,J.C., Krol,A. and Carbon,P. (2001) An unusually compact external promoter for RNA polymerase III transcription of the human H1RNA gene. Nucleic Acids Res., 29, 2502-2509.
29. Hernandez,N. and Lucito,R. (1988) Elements required for transcription initiation of the human U2 snRNA gene coincide with elements required for snRNA 3' end formation. EMBO J., 7, 3125-3134.
30. Myslinski,E., Krol,A. and Carbon,P. (1998) ZNF76 and ZNF143 are two human homologs of the transcriptional activator Staf. J. Biol. Chem., 273, 21998-22006.
31. Myslinski,E., Krol,A. and Carbon,P. (1992) Optimal tRNA((Ser)Sec) gene activity requires an upstream SPH motif. Nucleic Acids Res., 20, 203-209.
32. Weinmann,A.S. and Farnham,P.J. (2002) Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation. Methods, 26, 37-47.
33. Myslinski,E., Gerard,M.A., Krol,A. and Carbon,P. (2006) A genome scale location analysis of human Staf/ZNF143-binding sites suggests a widespread role for human Staf/ZNF143 in mammalian promoters. J. Biol. Chem., 281, 39953-39962.
34. Quandt,K., Frech,K., Karas,H., Wingender,E. and Werner,T. (1995) MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res., 23, 4878-4884.
35. Schaub,M., Krol,A. and Carbon,P. (1999) Flexible zinc finger requirement for binding of the transcriptional activator staf to U6 small nuclear RNA and tRNA(Sec) promoters. J. Biol. Chem., 274, 24241-24249.
36. Gerard,M.A., Krol,A. and Carbon,P. (2007) Transcription factor hStaf/ZNF143 is required for expression of the human TFAM gene. Gene, 401, 145-153.
37. Myslinski,E., Gerard,M.A., Krol,A. and Carbon,P. (2007) Transcription of the human cell cycle regulated BUB1B gene requires hStaf/ZNF143. Nucleic Acids Res., 35, 3453-3464.
38. Weiner,A.M. (2005) E Pluribus Unum: 3' end formation of polyadenylated mRNAs, histone mRNAs, and U snRNAs. Mol. Cell, 20, 168-170.
39. Barski,A., Cuddapah,S., Cui,K., Roh,T.Y., Schones,D.E., Wang,Z., Wei,G., Chepelev,I. and Zhao,K. (2007) High-resolution profiling of histone methylations in the human genome. Cell, 129, 823-837
40. Smale,S.T. and Kadonaga,J.T. (2003) The RNA polymerase II core promoter. Annu. Rev. Biochem., 72, 449-479.
41. Patikoglou,G.A., Kim,J.L., Sun,L., Yang,S.H., Kodadek,T. and Burley,S.K. (1999) TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes Dev., 13, 3217-3230.
42. Sandelin,A., Carninci,P., Lenhard,B., Ponjavic,J., Hayashizaki,Y. and Hume,D.A. (2007) Mammalian RNA polymerase II core promoters: insights from genome-wide studies. Nat. Rev. Genet., 8, 424-436.
43. Zhao,J.Q., Hoare,S.F., McFarlane,R., Muir,S., Parkinson,E.K., Black,D.M. and Keith,W.N. (1998) Cloning and characterization of human and mouse telomerase RNA gene promoter sequences. Oncogene, 16, 1345-1350.
44. Fu,D. and Collins,K. (2003) Distinct biogenesis pathways for human telomerase RNA and H/ACA small nucleolar RNAs. Mol. Cell, 11, 1361-1372.
45. Zhao,J., Bilsland,A., Hoare,S.F. and Keith,W.N. (2003) Involvement of NF-Y and Sp1 binding sequences in basal transcription of the human telomerase RNA gene. FEBS Lett., 536, 111-119.
46. Morlando,M., Ballarino,M., Greco,P., Caffarelli,E., Dichtl,B. and Bozzoni,I. (2004) Coupling between snoRNP assembly and 30 processing controls box C/D snoRNA biosynthesis in yeast. EMBO J., 23, 2392-2401.
47. Ballarino,M., Morlando,M., Pagano,F., Fatica,A. and Bozzoni,I. (2005) The cotranscriptional assembly of snoRNPs controls the biosynthesis of H/ACA snoRNAs in Saccharomyces cerevisiae. Mol. Cell Biol., 25, 5396-5403.