메뉴 건너뛰기




Volumn 6, Issue 1, 2011, Pages

DNA Topoisomerase II modulates insulator function in Drosophila

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING); DROSOPHILA PROTEIN; PROTEIN MOD(MDG4)2.2; PROTEIN SU(HW); UNCLASSIFIED DRUG; MODIFIER OF MDG4 PROTEIN, DROSOPHILA; REPRESSOR PROTEIN; SU(HW) PROTEIN, DROSOPHILA; TRANSCRIPTION FACTOR;

EID: 79551533330     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0016562     Document Type: Article
Times cited : (20)

References (53)
  • 2
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T (2007) Chromatin modifications and their function. Cell. 128: 693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 3
    • 34249307315 scopus 로고    scopus 로고
    • Nuclear organization of the genome and the potential for gene regulation
    • Fraser P, Bickmore W (2007) Nuclear organization of the genome and the potential for gene regulation. Nature 447: 413-417.
    • (2007) Nature , vol.447 , pp. 413-417
    • Fraser, P.1    Bickmore, W.2
  • 4
    • 33846283384 scopus 로고    scopus 로고
    • Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
    • Lanctot C, Cheutin T, Cremer M, Cavalli G, Cremer T (2007) Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nat Rev Genet 8: 104-115.
    • (2007) Nat Rev Genet , vol.8 , pp. 104-115
    • Lanctot, C.1    Cheutin, T.2    Cremer, M.3    Cavalli, G.4    Cremer, T.5
  • 5
    • 70249136846 scopus 로고    scopus 로고
    • Chromosome crosstalk in three dimensions
    • Gondor A, Ohlsson R (2009) Chromosome crosstalk in three dimensions. Nature 461: 212-217.
    • (2009) Nature , vol.461 , pp. 212-217
    • Gondor, A.1    Ohlsson, R.2
  • 6
    • 59349086115 scopus 로고    scopus 로고
    • Chromatin loops in gene regulation
    • Kadauke S, Blobel GA (2009) Chromatin loops in gene regulation. Biochim Biophys Acta 1789: 17-25.
    • (2009) Biochim Biophys Acta , vol.1789 , pp. 17-25
    • Kadauke, S.1    Blobel, G.A.2
  • 7
    • 35648990474 scopus 로고    scopus 로고
    • The role of insulator elements in large-scale chromatin structure in interphase
    • Dorman ER, Bushey AM, Corces VG (2007) The role of insulator elements in large-scale chromatin structure in interphase. Semin Cell Dev Biol 18: 682-690.
    • (2007) Semin Cell Dev Biol , vol.18 , pp. 682-690
    • Dorman, E.R.1    Bushey, A.M.2    Corces, V.G.3
  • 8
    • 35548990188 scopus 로고    scopus 로고
    • We gather together: Insulators and genome organization
    • Wallace JA, Felsenfeld G (2007) We gather together: insulators and genome organization. Curr Opin Genet Dev 17: 400-407.
    • (2007) Curr Opin Genet Dev , vol.17 , pp. 400-407
    • Wallace, J.A.1    Felsenfeld, G.2
  • 9
    • 33748259774 scopus 로고    scopus 로고
    • CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus
    • Splinter E, Heath H, Kooren J, Palstra RJ, Klous P, et al. (2006) CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus. Genes Dev 20: 2349-2354.
    • (2006) Genes Dev , vol.20 , pp. 2349-2354
    • Splinter, E.1    Heath, H.2    Kooren, J.3    Palstra, R.J.4    Klous, P.5
  • 10
    • 67549119096 scopus 로고    scopus 로고
    • CTCF: Master weaver of the genome
    • Phillips JE, Corces VG (2009) CTCF: master weaver of the genome. Cell 137: 1194-1211.
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 11
    • 33645814398 scopus 로고    scopus 로고
    • CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1
    • Ling JQ, Li T, Hu JF, Vu TH, Chen HL, et al. (2006) CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1. Science 312: 269-272.
    • (2006) Science , vol.312 , pp. 269-272
    • Ling, J.Q.1    Li, T.2    Hu, J.F.3    Vu, T.H.4    Chen, H.L.5
  • 12
    • 33746063711 scopus 로고    scopus 로고
    • CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2
    • Kurukuti S, Tiwari VK, Tavoosidana G, Pugacheva E, Murrell A, et al. (2006) CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2. Proc Natl Acad Sci U S A 103: 10684-10689.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 10684-10689
    • Kurukuti, S.1    Tiwari, V.K.2    Tavoosidana, G.3    Pugacheva, E.4    Murrell, A.5
  • 13
    • 53149107845 scopus 로고    scopus 로고
    • Chromatin insulators: Regulatory mechanisms and epigenetic inheritance
    • Bushey AM, Dorman ER, Corces VG (2008) Chromatin insulators: regulatory mechanisms and epigenetic inheritance. Mol Cell 32: 1-9.
    • (2008) Mol Cell , vol.32 , pp. 1-9
    • Bushey, A.M.1    Dorman, E.R.2    Corces, V.G.3
  • 14
    • 0032548927 scopus 로고    scopus 로고
    • Polycomb and trithorax group proteinsmediate the function of a chromatin insulator
    • Gerasimova TI, Corces VG (1998) Polycomb and trithorax group proteinsmediate the function of a chromatin insulator. Cell 92: 511-521.
    • (1998) Cell , vol.92 , pp. 511-521
    • Gerasimova, T.I.1    Corces, V.G.2
  • 15
    • 9744257012 scopus 로고    scopus 로고
    • The Centrosomal Protein CP190 Is a Component of the gypsy Chromatin Insulator
    • Pai CY, Lei EP, Ghosh D, Corces VG (2004) The Centrosomal Protein CP190 Is a Component of the gypsy Chromatin Insulator. Mol Cell 16: 737-748.
    • (2004) Mol Cell , vol.16 , pp. 737-748
    • Pai, C.Y.1    Lei, E.P.2    Ghosh, D.3    Corces, V.G.4
  • 17
    • 66149164708 scopus 로고    scopus 로고
    • Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions
    • Bushey AM, Ramos E, Corces VG (2009) Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev 23: 1338-1350.
    • (2009) Genes Dev , vol.23 , pp. 1338-1350
    • Bushey, A.M.1    Ramos, E.2    Corces, V.G.3
  • 18
    • 67650529804 scopus 로고    scopus 로고
    • Regulation of the Drosophila Enhancer of split and invected-engrailed gene complexes by sister chromatid cohesion proteins
    • Schaaf CA, Misulovin Z, Sahota G, Siddiqui AM, Schwartz YB, et al. (2009) Regulation of the Drosophila Enhancer of split and invected-engrailed gene complexes by sister chromatid cohesion proteins. PLoS One 4: e6202.
    • (2009) PLoS One , vol.14
    • Schaaf, C.A.1    Misulovin, Z.2    Sahota, G.3    Siddiqui, A.M.4    Schwartz, Y.B.5
  • 20
    • 34547627357 scopus 로고    scopus 로고
    • CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex
    • Holohan EE, Kwong C, Adryan B, Bartkuhn M, Herold M, et al. (2007) CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex. PLoS Genet 3: e112.
    • (2007) PLoS Genet , vol.3
    • Holohan, E.E.1    Kwong, C.2    Adryan, B.3    Bartkuhn, M.4    Herold, M.5
  • 21
    • 39749093935 scopus 로고    scopus 로고
    • Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila
    • Adryan B, Woerfel G, Birch-Machin I, Gao S, Quick M, et al. (2007) Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila. Genome Biol 8: R167.
    • (2007) Genome Biol , vol.8
    • Adryan, B.1    Woerfel, G.2    Birch-Machin, I.3    Gao, S.4    Quick, M.5
  • 22
    • 0028178501 scopus 로고
    • Forked proteins are components of fiber bundles present in developing bristles of Drosophila melanogaster
    • Petersen NS, Lankenau DH, Mitchell HK, Young P, Corces VG (1994) Forked proteins are components of fiber bundles present in developing bristles of Drosophila melanogaster. Genetics 136: 173-182.
    • (1994) Genetics , vol.136 , pp. 173-182
    • Petersen, N.S.1    Lankenau, D.H.2    Mitchell, H.K.3    Young, P.4    Corces, V.G.5
  • 23
    • 0027441765 scopus 로고
    • Effects of transposable elements on the expression of the forked gene of Drosophila melanogaster
    • Hoover KK, Chien AJ, Corces VG (1993) Effects of transposable elements on the expression of the forked gene of Drosophila melanogaster. Genetics 135: 507-526.
    • (1993) Genetics , vol.135 , pp. 507-526
    • Hoover, K.K.1    Chien, A.J.2    Corces, V.G.3
  • 24
    • 33746472891 scopus 로고    scopus 로고
    • RNA interference machinery influences the nuclear organization of a chromatin insulator
    • Lei EP, Corces VG (2006) RNA interference machinery influences the nuclear organization of a chromatin insulator. Nat Genet 38: 936-941.
    • (2006) Nat Genet , vol.38 , pp. 936-941
    • Lei, E.P.1    Corces, V.G.2
  • 25
    • 25844444153 scopus 로고    scopus 로고
    • The Ubiquitin Ligase dTopors Directs the Nuclear Organization of a Chromatin Insulator
    • Capelson M, Corces VG (2005) The Ubiquitin Ligase dTopors Directs the Nuclear Organization of a Chromatin Insulator. Mol Cell 20: 105-116.
    • (2005) Mol Cell , vol.20 , pp. 105-116
    • Capelson, M.1    Corces, V.G.2
  • 26
    • 63349108302 scopus 로고    scopus 로고
    • Topoisomerase II: A fitted mechanism for the chromatin landscape
    • Roca J (2009) Topoisomerase II: a fitted mechanism for the chromatin landscape. Nucleic Acids Res 37: 721-730.
    • (2009) Nucleic Acids Res , vol.37 , pp. 721-730
    • Roca, J.1
  • 27
    • 63349086953 scopus 로고    scopus 로고
    • The DNA cleavage reaction of topoisomerase II: Wolf in sheeps clothing
    • Deweese JE, Osheroff N (2009) The DNA cleavage reaction of topoisomerase II: wolf in sheeps clothing. Nucleic Acids Res 37: 738-748.
    • (2009) Nucleic Acids Res , vol.37 , pp. 738-748
    • Deweese, J.E.1    Osheroff, N.2
  • 28
    • 0030839857 scopus 로고    scopus 로고
    • Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II
    • Varga-Weisz PD, Wilm M, Bonte E, Dumas K, Mann M, et al. (1997) Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II. Nature 388: 598-602.
    • (1997) Nature , vol.388 , pp. 598-602
    • Varga-Weisz, P.D.1    Wilm, M.2    Bonte, E.3    Dumas, K.4    Mann, M.5
  • 29
    • 0031695155 scopus 로고    scopus 로고
    • Moving one DNA double helix through another by a type II DNA topoisomerase: The story of a simple molecular machine
    • Wang JC (1998) Moving one DNA double helix through another by a type II DNA topoisomerase: the story of a simple molecular machine. Q Rev Biophys 31: 107-144.
    • (1998) Q Rev Biophys , vol.31 , pp. 107-144
    • Wang, J.C.1
  • 30
    • 64649090292 scopus 로고    scopus 로고
    • Targeting DNA topoisomerase II in cancer chemotherapy
    • Nitiss JL (2009) Targeting DNA topoisomerase II in cancer chemotherapy. Nature Reviews Cancer 9: 338-350.
    • (2009) Nature Reviews Cancer , vol.9 , pp. 338-350
    • Nitiss, J.L.1
  • 31
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: Structure, function, and mechanism
    • Champoux JJ (2001) DNA topoisomerases: structure, function, and mechanism. Annu Rev Biochem 70: 369-413.
    • (2001) Annu Rev Biochem , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 33
    • 0024279845 scopus 로고
    • Transcription generates positively and negatively supercoiled domains in the template
    • Wu HY, Shyy SH, Wang JC, Liu LF (1988) Transcription generates positively and negatively supercoiled domains in the template. Cell 53: 433-440.
    • (1988) Cell , vol.53 , pp. 433-440
    • Wu, H.Y.1    Shyy, S.H.2    Wang, J.C.3    Liu, L.F.4
  • 34
    • 34447530305 scopus 로고    scopus 로고
    • A genomewide transgenic RNAi library for conditional gene inactivation in Drosophila
    • Dietzl G, Chen D, Schnorrer F, Su KC, Barinova Y, et al. (2007) A genomewide transgenic RNAi library for conditional gene inactivation in Drosophila. Nature 448: 151-156.
    • (2007) Nature , vol.448 , pp. 151-156
    • Dietzl, G.1    Chen, D.2    Schnorrer, F.3    Su, K.C.4    Barinova, Y.5
  • 35
    • 0035937417 scopus 로고    scopus 로고
    • Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila
    • Ahmad K, Henikoff S (2001) Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila. Cell 104: 839-847.
    • (2001) Cell , vol.104 , pp. 839-847
    • Ahmad, K.1    Henikoff, S.2
  • 36
    • 0026784653 scopus 로고
    • Dominant effects of suppressor of Hairy-wing mutations on gypsy-induced alleles of forked and cut in Drosophila melanogaster
    • Hoover KK, Gerasimova TI, Chien AJ, Corces VG (1992) Dominant effects of suppressor of Hairy-wing mutations on gypsy-induced alleles of forked and cut in Drosophila melanogaster. Genetics 132: 691-697.
    • (1992) Genetics , vol.132 , pp. 691-697
    • Hoover, K.K.1    Gerasimova, T.I.2    Chien, A.J.3    Corces, V.G.4
  • 37
    • 36749079905 scopus 로고    scopus 로고
    • Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila
    • Gerasimova TI, Lei EP, Bushey AM, Corces VG (2007) Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila. Mol Cell 28: 761-772.
    • (2007) Mol Cell , vol.28 , pp. 761-772
    • Gerasimova, T.I.1    Lei, E.P.2    Bushey, A.M.3    Corces, V.G.4
  • 38
    • 0035873243 scopus 로고    scopus 로고
    • Interactions between the Su(Hw) and Mod(mdg4) proteins required for gypsy insulator function
    • Ghosh D, Gerasimova TI, Corces VG (2001) Interactions between the Su(Hw) and Mod(mdg4) proteins required for gypsy insulator function. Embo J 20: 2518-2527.
    • (2001) Embo J , vol.20 , pp. 2518-2527
    • Ghosh, D.1    Gerasimova, T.I.2    Corces, V.G.3
  • 39
    • 0042978644 scopus 로고    scopus 로고
    • Visualization of chromatin domains created by the gypsy insulator of Drosophila
    • Byrd K, Corces VG (2003) Visualization of chromatin domains created by the gypsy insulator of Drosophila. J Cell Biol 162: 565-574.
    • (2003) J Cell Biol , vol.162 , pp. 565-574
    • Byrd, K.1    Corces, V.G.2
  • 41
    • 0348013023 scopus 로고    scopus 로고
    • RNAi analysis reveals an unexpected role for topoisomerase II in chromosome arm congression to a metaphase plate
    • Chang CJ, Goulding S, Earnshaw WC, Carmena M (2003) RNAi analysis reveals an unexpected role for topoisomerase II in chromosome arm congression to a metaphase plate. J Cell Sci 116: 4715-4726.
    • (2003) J Cell Sci , vol.116 , pp. 4715-4726
    • Chang, C.J.1    Goulding, S.2    Earnshaw, W.C.3    Carmena, M.4
  • 43
    • 0031915974 scopus 로고    scopus 로고
    • A nuclear matrix/scaffold attachment region co-localizes with the gypsy retrotransposon insulator sequence
    • Nabirochkin S, Ossokina M, Heidmann T (1998) A nuclear matrix/scaffold attachment region co-localizes with the gypsy retrotransposon insulator sequence. J Biol Chem 273: 2473-2479.
    • (1998) J Biol Chem , vol.273 , pp. 2473-2479
    • Nabirochkin, S.1    Ossokina, M.2    Heidmann, T.3
  • 44
    • 65449116170 scopus 로고    scopus 로고
    • Active promoters and insulators are marked by the centrosomal protein 190
    • Bartkuhn M, Straub T, Herold M, Herrmann M, Rathke C, et al. (2009) Active promoters and insulators are marked by the centrosomal protein 190. Embo J 28: 877-888.
    • (2009) Embo J , vol.28 , pp. 877-888
    • Bartkuhn, M.1    Straub, T.2    Herold, M.3    Herrmann, M.4    Rathke, C.5
  • 45
    • 67650093438 scopus 로고    scopus 로고
    • Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription
    • Jiang N, Emberly E, Cuvier O, Hart CM (2009) Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription. Mol Cell Biol 29: 3556-3568.
    • (2009) Mol Cell Biol , vol.29 , pp. 3556-3568
    • Jiang, N.1    Emberly, E.2    Cuvier, O.3    Hart, C.M.4
  • 46
    • 63349089769 scopus 로고    scopus 로고
    • Genome wide ChIP-chip analyses reveal important roles for CTCF in Drosophila genome organization
    • Smith ST, Wickramasinghe P, Olson A, Loukinov D, Lin L, et al. (2009) Genome wide ChIP-chip analyses reveal important roles for CTCF in Drosophila genome organization. Dev Biol 328: 518-528.
    • (2009) Dev Biol , vol.328 , pp. 518-528
    • Smith, S.T.1    Wickramasinghe, P.2    Olson, A.3    Loukinov, D.4    Lin, L.5
  • 47
    • 59849122478 scopus 로고    scopus 로고
    • Cutting edge: Developmental stage-specific recruitment of cohesin to CTCF sites throughout immunoglobulin loci during B lymphocyte development
    • Degner SC, Wong TP, Jankevicius G, Feeney AJ (2009) Cutting edge: developmental stage-specific recruitment of cohesin to CTCF sites throughout immunoglobulin loci during B lymphocyte development. J Immunol 182: 44-48.
    • (2009) J Immunol , vol.182 , pp. 44-48
    • Degner, S.C.1    Wong, T.P.2    Jankevicius, G.3    Feeney, A.J.4
  • 48
    • 77952328364 scopus 로고    scopus 로고
    • Gene-specific repression of the p53 target gene PUMA via intragenic CTCF-Cohesin binding
    • Gomes NP, Espinosa JM (2010) Gene-specific repression of the p53 target gene PUMA via intragenic CTCF-Cohesin binding. Genes Dev 24: 1022-1034.
    • (2010) Genes Dev , vol.24 , pp. 1022-1034
    • Gomes, N.P.1    Espinosa, J.M.2
  • 49
    • 72749098126 scopus 로고    scopus 로고
    • Concomitant suppression of three target genes can explain the impact of a microRNA on metastasis
    • Valastyan S, Benaich N, Chang A, Reinhardt F, Weinberg RA (2009) Concomitant suppression of three target genes can explain the impact of a microRNA on metastasis. Genes Dev 23: 2592-2597.
    • (2009) Genes Dev , vol.23 , pp. 2592-2597
    • Valastyan, S.1    Benaich, N.2    Chang, A.3    Reinhardt, F.4    Weinberg, R.A.5
  • 51
    • 67649202192 scopus 로고    scopus 로고
    • Synergistic interaction of proteasome and topoisomerase II inhibition in multiple myeloma
    • von Metzler I, Heider U, Mieth M, Lamottke B, Kaiser M, et al. (2009) Synergistic interaction of proteasome and topoisomerase II inhibition in multiple myeloma. Exp Cell Res 315: 2471-2478.
    • (2009) Exp Cell Res , vol.315 , pp. 2471-2478
    • von Metzler, I.1    Heider, U.2    Mieth, M.3    Lamottke, B.4    Kaiser, M.5
  • 52
    • 56449089043 scopus 로고    scopus 로고
    • Proteasome-dependent degradation of Chk1 kinase induced by the topoisomerase II inhibitor R16 contributes to its anticancer activity
    • Feng JM, Zhu H, Zhang XW, Ding J, Miao ZH (2008) Proteasome-dependent degradation of Chk1 kinase induced by the topoisomerase II inhibitor R16 contributes to its anticancer activity. Cancer Biol Ther 7.
    • (2008) Cancer Biol Ther , pp. 7
    • Feng, J.M.1    Zhu, H.2    Zhang, X.W.3    Ding, J.4    Miao, Z.H.5
  • 53
    • 0030906521 scopus 로고    scopus 로고
    • Doom, a product of the Drosophila mod(mdg4) gene, induces apoptosis and binds to baculovirus inhibitor-ofapoptosis proteins
    • Harvey AJ, Bidwai AP, Miller LK (1997) Doom, a product of the Drosophila mod(mdg4) gene, induces apoptosis and binds to baculovirus inhibitor-ofapoptosis proteins. Mol Cell Biol 17: 2835-2843.
    • (1997) Mol Cell Biol , vol.17 , pp. 2835-2843
    • Harvey, A.J.1    Bidwai, A.P.2    Miller, L.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.