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Volumn 30, Issue 4, 2013, Pages 881-893

Evolutionary and population genomics of the cavity causing bacteria streptococcus mutans

Author keywords

bacterial evolution; cavities; demographic inference; infectious disease; pan and core genome; Streptococcus mutans

Indexed keywords

SUGAR;

EID: 84875588484     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mss278     Document Type: Article
Times cited : (143)

References (94)
  • 3
    • 64749100673 scopus 로고    scopus 로고
    • Changes in biochemical and phenotypic properties of Streptococcus mutans during growth with aeration
    • Ahn SJ, Browngardt CM, Burne RA. 2009. Changes in biochemical and phenotypic properties of Streptococcus mutans during growth with aeration. Appl Environ Microbiol. 75:2517-2527..
    • (2009) Appl Environ Microbiol. , vol.75 , pp. 2517-2527
    • Ahn, S.J.1    Browngardt, C.M.2    Burne, R.A.3
  • 4
    • 34548480696 scopus 로고    scopus 로고
    • Effects of oxygen on biofilm formation and the AtlA autolysin of Streptococcus mutans
    • Ahn SJ, Burne RA. 2007. Effects of oxygen on biofilm formation and the AtlA autolysin of Streptococcus mutans. J Bacteriol. 189:6293-6302..
    • (2007) J Bacteriol. , vol.189 , pp. 6293-6302
    • Ahn, S.J.1    Burne, R.A.2
  • 5
    • 0037195085 scopus 로고    scopus 로고
    • Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen
    • 19 Co-authors
    • Ajdic D, McShan WM, McLaughlin RE, et al. (19 co-authors). 2002. Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen. Proc Natl Acad Sci U S A. 99:14434-14439..
    • (2002) Proc Natl Acad Sci U S A. , vol.99 , pp. 14434-14439
    • Ajdic, D.1    McShan, W.M.2    McLaughlin, R.E.3
  • 8
    • 0842266507 scopus 로고    scopus 로고
    • Regulation of fermentation in a ruminal bacterium, Streptococcus bovis, with special reference to rumen acidosis
    • Asanuma N, Hino T. 2002. Regulation of fermentation in a ruminal bacterium, Streptococcus bovis, with special reference to rumen acidosis. Animal Sci J. 73:313-325..
    • (2002) Animal Sci J. , vol.73 , pp. 313-325
    • Asanuma, N.1    Hino, T.2
  • 9
    • 0036840728 scopus 로고    scopus 로고
    • Different bacteriocin activities of Streptococcus mutans reflect distinct phylogenetic lineages
    • Balakrishnan M, Simmonds RS, Kilian M, Tagg Jr. 2002. Different bacteriocin activities of Streptococcus mutans reflect distinct phylogenetic lineages. J Med Microbiol. 51:941-948..
    • (2002) J Med Microbiol. , vol.51 , pp. 941-948
    • Balakrishnan, M.1    Simmonds, R.S.2    Kilian, M.3    Tagg, J.R.4
  • 10
    • 0025731188 scopus 로고
    • Adaptation of Streptococcus mutans and Enterococcus hirae to acid stress in continuous culture
    • Belli WA, Marquis RE. 1991. Adaptation of Streptococcus mutans and Enterococcus hirae to acid stress in continuous culture. Appl Environ Microbiol. 57:1134-1138..
    • (1991) Appl Environ Microbiol. , vol.57 , pp. 1134-1138
    • Belli, W.A.1    Marquis, R.E.2
  • 11
    • 0023405116 scopus 로고
    • Membrane ATPases and acid tolerance of Actinomyces viscosus and Lactobacillus casei
    • Bender GR,Marquis RE. 1987. Membrane ATPases and acid tolerance of Actinomyces viscosus and Lactobacillus casei. Appl Environ Microbiol. 53:2124-2128..
    • (1987) Appl Environ Microbiol. , vol.53 , pp. 2124-2128
    • Bender, G.R.1    Marquis, R.E.2
  • 12
    • 0022457545 scopus 로고
    • Acid tolerance, proton permeabilities, and membrane ATPases of oral streptococci
    • Bender GR, Sutton SV, Marquis RE. 1986. Acid tolerance, proton permeabilities, and membrane ATPases of oral streptococci. Infect Immun. 53:331-338..
    • (1986) Infect Immun. , vol.53 , pp. 331-338
    • Bender, G.R.1    Sutton, S.V.2    Marquis, R.E.3
  • 13
    • 0000241874 scopus 로고
    • Genmark-parallel gene recognition for both DNA strands
    • Borodovsky M, Mcininch J. 1993. Genmark-parallel gene recognition for both DNA strands. Comput Chem. 17:123-133..
    • (1993) Comput Chem. , vol.17 , pp. 123-133
    • Borodovsky, M.1    McIninch, J.2
  • 14
    • 44949129000 scopus 로고    scopus 로고
    • Assessing the evolutionary impact of amino acid mutations in the human genome
    • 14 Co-authors
    • Boyko AR, Williamson SH, Indap AR, et al. (14 co-authors). 2008. Assessing the evolutionary impact of amino acid mutations in the human genome. PLoS Genet. 4:e1000083..
    • (2008) PLoS Genet. , vol.4
    • Boyko, A.R.1    Williamson, S.H.2    Indap, A.R.3
  • 15
  • 17
    • 0032223641 scopus 로고    scopus 로고
    • Oral Streptococci: Products of their environment
    • Burne R. 1998. Oral Streptococci: products of their environment. J Dental Res. 77: 445-452..
    • (1998) J Dental Res. , vol.77 , pp. 445-452
    • Burne, R.1
  • 18
    • 0035691964 scopus 로고    scopus 로고
    • Directional selection and the site-frequency spectrum
    • Bustamante CD, Wakeley J, Sawyer S, Hartl DL. 2001. Directional selection and the site-frequency spectrum. Genetics 159:1779-1788..
    • (2001) Genetics , vol.159 , pp. 1779-1788
    • Bustamante, C.D.1    Wakeley, J.2    Sawyer, S.3    Hartl, D.L.4
  • 19
    • 34848916049 scopus 로고    scopus 로고
    • Genome-wide patterns of nucleotide polymorphism in domesticated rice
    • 12 Co-authors
    • Caicedo AL, Williamson SH, Hernandez RD, et al. (12 co-authors). 2007. Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genet. 3:1745-1756..
    • (2007) PLoS Genet. , vol.3 , pp. 1745-1756
    • Caicedo, A.L.1    Williamson, S.H.2    Hernandez, R.D.3
  • 22
    • 78650037203 scopus 로고    scopus 로고
    • Deep resequencing reveals excess rare recent variants consistent with explosive population growth
    • 29 Co-authors
    • Coventry A, Bull-Otterson LM, Liu X, et al. (29 co-authors). 2010. Deep resequencing reveals excess rare recent variants consistent with explosive population growth. Nat Commun. 1:131..
    • (2010) Nat Commun. , vol.1 , pp. 131
    • Coventry, A.1    Bull-Otterson, L.M.2    Liu, X.3
  • 23
    • 79251544864 scopus 로고    scopus 로고
    • Rapid pneumococcal evolution in response to clinical interventions
    • 23 Co-authors
    • Croucher NJ, Harris SR, Fraser C, et al. (23 co-authors). 2011. Rapid pneumococcal evolution in response to clinical interventions. Science 331:430-434..
    • (2011) Science , vol.331 , pp. 430-434
    • Croucher, N.J.1    Harris, S.R.2    Fraser, C.3
  • 25
    • 0037043719 scopus 로고    scopus 로고
    • Evolution, consequences and future of plant and animal domestication
    • Diamond J. 2002. Evolution, consequences and future of plant and animal domestication. Nature 418:700-707.
    • (2002) Nature , vol.418 , pp. 700-707
    • Diamond, J.1
  • 26
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • Didelot X, Falush D. 2007. Inference of bacterial microevolution using multilocus sequence data. Genetics 175:1251-1266..
    • Genetics , vol.175 , Issue.2007 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 27
    • 77949351363 scopus 로고    scopus 로고
    • Generation of diversity in Streptococcus mutans genes demonstrated by MLST
    • 10 Co-authors
    • Do T, Gilbert SC, Clark D, et al. (10 co-authors). 2010. Generation of diversity in Streptococcus mutans genes demonstrated by MLST. PLoS One 5:e9073..
    • (2010) PLoS One , vol.5
    • Do, T.1    Gilbert, S.C.2    Clark, D.3
  • 28
    • 0030024686 scopus 로고    scopus 로고
    • Infectious diseases and human population history
    • Dobson AP, Carper ER. 1996. Infectious diseases and human population history. Bioscience 46:115-126..
    • (1996) Bioscience , vol.46 , pp. 115-126
    • Dobson, A.P.1    Carper, E.R.2
  • 29
    • 77958580152 scopus 로고    scopus 로고
    • Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
    • 18 Co-authors
    • Donati C, Hiller NL, Tettelin H, et al. (18 co-authors). 2010. Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species. Genome Biol. 11:R107..
    • (2010) Genome Biol. , vol.11
    • Donati, C.1    Hiller, N.L.2    Tettelin, H.3
  • 30
    • 0025886466 scopus 로고
    • A constant rate of spontaneous mutation in DNA-based microbes
    • Drake JW. 1991. A constant rate of spontaneous mutation in DNA-based microbes. Proc Natl Acad Sci U S A. 88:7160-7164..
    • (1991) Proc Natl Acad Sci U S A. , vol.88 , pp. 7160-7164
    • Drake, J.W.1
  • 31
    • 0025700684 scopus 로고
    • Evolution. Mountaineering with microbes
    • Dykhuizen DE. 1990a. Evolution. Mountaineering with microbes. Nature 346:15-16..
    • (1990) Nature , vol.346 , pp. 15-16
    • Dykhuizen, D.E.1
  • 32
    • 0025527885 scopus 로고
    • Experimental studies of natural selection in bacteria
    • Dykhuizen DE. 1990b. Experimental studies of natural selection in bacteria. Annu Rev Ecol System. 21:373-398..
    • (1990) Annu Rev Ecol System. , vol.21 , pp. 373-398
    • Dykhuizen, D.E.1
  • 33
    • 0027771323 scopus 로고
    • Chemostats used for studying natural selection and adaptive evolution
    • Dykhuizen DE. 1993. Chemostats used for studying natural selection and adaptive evolution. Methods Enzymol. 224:613-631..
    • (1993) Methods Enzymol. , vol.224 , pp. 613-631
    • Dykhuizen, D.E.1
  • 34
  • 35
    • 7344256121 scopus 로고    scopus 로고
    • Genotyping shows different strains of mutans Streptococci between father and child and within parental pairs in Swedish families
    • Emanuelsson IR, Li Y, Bratthall D. 1998. Genotyping shows different strains of mutans Streptococci between father and child and within parental pairs in Swedish families. Oral Microbiol Immunol. 13:271-277..
    • (1998) Oral Microbiol Immunol. , vol.13 , pp. 271-277
    • Emanuelsson, I.R.1    Li, Y.2    Bratthall, D.3
  • 36
    • 0034150454 scopus 로고    scopus 로고
    • Genotypes of mutans Streptococci tend to persist in their host for several years
    • Emanuelsson IR, Thornqvist E. 2000. Genotypes of mutans Streptococci tend to persist in their host for several years. Caries Res. 34:133-139..
    • (2000) Caries Res. , vol.34 , pp. 133-139
    • Emanuelsson, I.R.1    Thornqvist, E.2
  • 38
    • 0023605274 scopus 로고
    • Neolithic transition and dental changes - The case of an Italian site
    • Formicola V. 1987. Neolithic transition and dental changes-the case of an Italian site. J Hum Evol. 16:231-239..
    • (1987) J Hum Evol. , vol.16 , pp. 231-239
    • Formicola, V.1
  • 40
    • 0010312159 scopus 로고
    • Bacteriology of dental caries
    • Gibbons RJ. 1964. Bacteriology of dental caries. J Dent Res. 43(Suppl): 1021-1028..
    • (1964) J Dent Res. , vol.43 , Issue.SUPPL. , pp. 1021-1028
    • Gibbons, R.J.1
  • 41
    • 71049140024 scopus 로고    scopus 로고
    • Global transcriptional analysis of acid-inducible genes in Streptococcus mutans: Multiple two-component systems involved in acid adaptation
    • Gong Y, Tian XL, Sutherland T, Sisson G,Mai J, Ling J, Li YH. 2009. Global transcriptional analysis of acid-inducible genes in Streptococcus mutans: multiple two-component systems involved in acid adaptation. Microbiology 155:3322-3332..
    • (2009) Microbiology , vol.155 , pp. 3322-3332
    • Gong, Y.1    Tian, X.L.2    Sutherland, T.3    Sisson Gmai, J.4    Ling, J.5    Li, Y.H.6
  • 42
    • 0028782096 scopus 로고
    • Sampling theory for neutral alleles in a varying environment
    • Griffiths RC, Tavare S. 1994. Sampling theory for neutral alleles in a varying environment. Philos Trans R Soc Lond B Biol Sci. 344: 403-410..
    • (1994) Philos Trans R Soc Lond B Biol Sci. , vol.344 , pp. 403-410
    • Griffiths, R.C.1    Tavare, S.2
  • 43
    • 73449149044 scopus 로고    scopus 로고
    • Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
    • Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD. 2009. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet. 5:e1000695..
    • (2009) PLoS Genet. , vol.5
    • Gutenkunst, R.N.1    Hernandez, R.D.2    Williamson, S.H.3    Bustamante, C.D.4
  • 44
    • 0028030110 scopus 로고
    • Detecting selective sweeps in naturally occurring Escherichia coli
    • Guttman DS, Dykhuizen DE. 1994. Detecting selective sweeps in naturally occurring Escherichia coli. Genetics 138:993-1003..
    • (1994) Genetics , vol.138 , pp. 993-1003
    • Guttman, D.S.1    Dykhuizen, D.E.2
  • 45
    • 0019255349 scopus 로고
    • Biology, immunology, and cariogenicity of Streptococcus mutans
    • Hamada S, Slade HD. 1980. Biology, immunology, and cariogenicity of Streptococcus mutans. Microbiol Rev. 44:331-384..
    • (1980) Microbiol Rev. , vol.44 , pp. 331-384
    • Hamada, S.1    Slade, H.D.2
  • 46
    • 51649097234 scopus 로고    scopus 로고
    • Acid diffusion through extracellular polysaccharides produced by various mutants of Streptococcus mutans
    • He X, Wu C, Yarbrough D, Sim L, Niu G,Merritt J, ShiW, Qi F. 2008. Acid diffusion through extracellular polysaccharides produced by various mutants of Streptococcus mutans. Mol Microbiol. 70:112-126..
    • (2008) Mol Microbiol. , vol.70 , pp. 112-126
    • He, X.1    Wu, C.2    Yarbrough, D.3    Sim, L.4    Niu Gmerritt, J.5    Shiw Qi, F.6
  • 47
    • 19944433742 scopus 로고    scopus 로고
    • Emergence of endocarditis due to group D streptococci: Findings derived from the merged database of the International Collaboration on Endocarditis
    • 13 Co-authors
    • Hoen B, Chirouze C, Cabell CH, et al. (13 co-authors). 2005. Emergence of endocarditis due to group D streptococci: findings derived from the merged database of the International Collaboration on Endocarditis. Eur J Clin Microbiol Infect Dis. 24:12-16..
    • (2005) Eur J Clin Microbiol Infect Dis. , vol.24 , pp. 12-16
    • Hoen, B.1    Chirouze, C.2    Cabell, C.H.3
  • 48
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18:337-338..
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 49
    • 15544381275 scopus 로고    scopus 로고
    • Evidence for abundant slightly deleterious polymorphisms in bacterial populations
    • Hughes AL. 2005. Evidence for abundant slightly deleterious polymorphisms in bacterial populations. Genetics 169:533-538..
    • (2005) Genetics , vol.169 , pp. 533-538
    • Hughes, A.L.1
  • 50
    • 24044548304 scopus 로고    scopus 로고
    • Species identification of mutans streptococci by groESL gene sequence
    • Hung WC, Tsai JC, Hsueh PR, Chia JS, Teng LJ. 2005. Species identification of mutans streptococci by groESL gene sequence. J Med Microbiol. 54:857-862..
    • (2005) J Med Microbiol. , vol.54 , pp. 857-862
    • Hung, W.C.1    Tsai, J.C.2    Hsueh, P.R.3    Chia, J.S.4    Teng, L.J.5
  • 51
    • 0024447322 scopus 로고
    • Carbohydrate uptake in the oral pathogen Streptococcusmutans:mechanisms and regulation by protein phosphorylation
    • Jacobson GR, Lodge J, Poy F. 1989. Carbohydrate uptake in the oral pathogen Streptococcusmutans:mechanisms and regulation by protein phosphorylation. Biochimie 71:997-1004..
    • (1989) Biochimie , vol.71 , pp. 997-1004
    • Jacobson, G.R.1    Lodge, J.2    Poy, F.3
  • 52
    • 84861215953 scopus 로고    scopus 로고
    • Transcriptional organization and physiological contributions of the relQ operon of Streptococcus mutans
    • Kim JN, Ahn SJ, Seaton K, Garrett S, Burne RA. 2012. Transcriptional organization and physiological contributions of the relQ operon of Streptococcus mutans. J Bacteriol. 194:1968-1978..
    • (2012) J Bacteriol. , vol.194 , pp. 1968-1978
    • Kim, J.N.1    Ahn, S.J.2    Seaton, K.3    Garrett, S.4    Burne, R.A.5
  • 53
    • 0026760684 scopus 로고
    • 2-Hydroxyglutaryl-CoA dehydratase from Fusobacterium nucleatum (subsp. nucleatum): An iron-sulfur flavoprotein
    • Klees AG, Linder D, BuckelW. 1992. 2-Hydroxyglutaryl-CoA dehydratase from Fusobacterium nucleatum (subsp. nucleatum): an iron-sulfur flavoprotein. Arch Microbiol. 158:294-301..
    • (1992) Arch Microbiol. , vol.158 , pp. 294-301
    • Klees, A.G.1    Linder, D.2    Buckel, W.3
  • 54
    • 5444243076 scopus 로고    scopus 로고
    • Longitudinal study of transmission, diversity, and stability of Streptococcus mutans and Streptococcus sobrinus genotypes in Brazilian nursery children
    • Klein MI, Florio FM, Pereira AC, Hofling JF, Goncalves RB. 2004. Longitudinal study of transmission, diversity, and stability of Streptococcus mutans and Streptococcus sobrinus genotypes in Brazilian nursery children. J Clin Microbiol. 42:4620-4626..
    • (2004) J Clin Microbiol. , vol.42 , pp. 4620-4626
    • Klein, M.I.1    Florio, F.M.2    Pereira, A.C.3    Hofling, J.F.4    Goncalves, R.B.5
  • 55
    • 46049097957 scopus 로고    scopus 로고
    • Streptococcal antagonism in oral biofilms: Streptococcus sanguinis and Streptococcus gordonii interference with Streptococcus mutans
    • Kreth J, Zhang Y, Herzberg MC. 2008. Streptococcal antagonism in oral biofilms: Streptococcus sanguinis and Streptococcus gordonii interference with Streptococcus mutans. J Bacteriol. 190:4632-4640..
    • (2008) J Bacteriol. , vol.190 , pp. 4632-4640
    • Kreth, J.1    Zhang, Y.2    Herzberg, M.C.3
  • 56
    • 0034283229 scopus 로고    scopus 로고
    • Intraspecies variation in bacterial genomes: The need for a species genome concept
    • Lan R, Reeves PR. 2000. Intraspecies variation in bacterial genomes: the need for a species genome concept. Trends Microbiol. 8:396-401..
    • (2000) Trends Microbiol. , vol.8 , pp. 396-401
    • Lan, R.1    Reeves, P.R.2
  • 57
    • 0035448522 scopus 로고    scopus 로고
    • When does a clone deserve a name? A perspective on bacterial species based on population genetics
    • Lan R, Reeves PR. 2001. When does a clone deserve a name? A perspective on bacterial species based on population genetics. Trends Microbiol. 9:419-424..
    • (2001) Trends Microbiol. , vol.9 , pp. 419-424
    • Lan, R.1    Reeves, P.R.2
  • 58
    • 61349194462 scopus 로고    scopus 로고
    • Estimating the size of the bacterial pan-genome
    • Lapierre P, Gogarten JP. 2009. Estimating the size of the bacterial pan-genome. Trends Genet. 25:107-110..
    • (2009) Trends Genet. , vol.25 , pp. 107-110
    • Lapierre, P.1    Gogarten, J.P.2
  • 59
    • 77958479691 scopus 로고    scopus 로고
    • Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept
    • Lefebure T, Bitar PD, Suzuki H, Stanhope MJ. 2010. Evolutionary dynamics of complete Campylobacter pan-genomes and the bacterial species concept. Genome Biol Evol. 2:646-655..
    • (2010) Genome Biol Evol. , Issue.2 , pp. 646-655
    • Lefebure, T.1    Bitar, P.D.2    Suzuki, H.3    Stanhope, M.J.4
  • 60
    • 66649094404 scopus 로고    scopus 로고
    • A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis
    • 15 Co-authors
    • Leopold SR, Magrini V, Holt NJ, et al. (15 co-authors). 2009. A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis. Proc Natl Acad Sci U S A. 106:8713-8718..
    • (2009) Proc Natl Acad Sci U S A. , vol.106 , pp. 8713-8718
    • Leopold, S.R.1    Magrini, V.2    Holt, N.J.3
  • 61
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18: 1851-1858..
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 62
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert CJ Jr, Roos DS. 2003. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13:2178-2189..
    • (2003) Genome Res. , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, Jr.C.J.2    Roos, D.S.3
  • 63
    • 0022993292 scopus 로고
    • Role of Streptococcus mutans in human dental decay
    • Loesche WJ. 1986. Role of Streptococcus mutans in human dental decay. Microbiol Rev. 50:353-380..
    • (1986) Microbiol Rev. , vol.50 , pp. 353-380
    • Loesche, W.J.1
  • 64
    • 0026569714 scopus 로고
    • Dental paleopathology and agricultural intensification in south Asia: New evidence from Bronze Age Harappa
    • Lukacs Jr. 1992. Dental paleopathology and agricultural intensification in south Asia: new evidence from Bronze Age Harappa. Am J Phys Anthropol. 87:133-150..
    • (1992) Am J Phys Anthropol. , vol.87 , pp. 133-150
    • Lukacs, J.R.1
  • 65
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: New solutions for gene finding
    • Lukashin AV, Borodovsky M. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26:1107-1115..
    • (1998) Nucleic Acids Res. , vol.26 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 66
    • 77749261529 scopus 로고    scopus 로고
    • The power of the methods for detecting interlocus gene conversion
    • Mansai SP, Innan H. 2010. The power of the methods for detecting interlocus gene conversion. Genetics 184:517-527..
    • (2010) Genetics , vol.184 , pp. 517-527
    • Mansai, S.P.1    Innan, H.2
  • 67
    • 0025284738 scopus 로고
    • Diminished acid tolerance of plaque bacteria caused by fluoride
    • discussion
    • Marquis RE. 1990. Diminished acid tolerance of plaque bacteria caused by fluoride. J Dent Res. 69 (Spec no. 672-675);discussion 682-683..
    • (1990) J Dent Res. , vol.69 , Issue.SPEC NO. 672-675 , pp. 682-683
    • Marquis, R.E.1
  • 68
    • 0028821951 scopus 로고
    • Oxygen metabolism, oxidative stress and acidbase physiology of dental plaque biofilms
    • Marquis RE. 1995. Oxygen metabolism, oxidative stress and acidbase physiology of dental plaque biofilms. J Ind Microbiol. 15: 198-207..
    • (1995) J Ind Microbiol. , vol.15 , pp. 198-207
    • Marquis, R.E.1
  • 69
    • 33746271858 scopus 로고    scopus 로고
    • Independent evolution of competence regulatory cascades in streptococci?
    • Martin B, Quentin Y, Fichant G, Claverys JP. 2006. Independent evolution of competence regulatory cascades in streptococci? Trends Microbiol. 14:339-345..
    • (2006) Trends Microbiol. , vol.14 , pp. 339-345
    • Martin, B.1    Quentin, Y.2    Fichant, G.3    Claverys, J.P.4
  • 70
    • 69049090909 scopus 로고    scopus 로고
    • Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content
    • 13 Co-authors
    • Maruyama F, Kobata M, Kurokawa K, et al. (13 co-authors). 2009. Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content. BMC Genomics 10:358..
    • (2009) BMC Genomics , vol.10 , pp. 358
    • Maruyama, F.1    Kobata, M.2    Kurokawa, K.3
  • 71
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, KreitmanM. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654..
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 72
    • 34547875459 scopus 로고    scopus 로고
    • Genetic characterization of the hdrRM operon: A novel high-cell-density-responsive regulator in Streptococcus mutans
    • Merritt J, Zheng L, Shi W, Qi F. 2007. Genetic characterization of the hdrRM operon: a novel high-cell-density-responsive regulator in Streptococcus mutans. Microbiology 153:2765-2773..
    • (2007) Microbiology , vol.153 , pp. 2765-2773
    • Merritt, J.1    Zheng, L.2    Shi, W.3    Qi, F.4
  • 73
    • 80555122871 scopus 로고    scopus 로고
    • Population genetics and evolution of the pan-genome of Streptococcus pneumoniae
    • Muzzi A, Donati C. 2011. Population genetics and evolution of the pan-genome of Streptococcus pneumoniae. Int J Med Microbiol. 301:619-622..
    • (2011) Int J Med Microbiol. , Issue.301 , pp. 619-622
    • Muzzi, A.1    Donati, C.2
  • 74
    • 42649093791 scopus 로고    scopus 로고
    • Interpreting principal component analyses of spatial population genetic variation
    • Novembre J, Stephens M. 2008. Interpreting principal component analyses of spatial population genetic variation. Nat Genet. 40:646-649..
    • (2008) Nat Genet. , vol.40 , pp. 646-649
    • Novembre, J.1    Stephens, M.2
  • 75
    • 0346726023 scopus 로고    scopus 로고
    • Neutral mutations and neutral substitutions in bacterial genomes
    • Ochman H. 2003. Neutral mutations and neutral substitutions in bacterial genomes. Mol Biol Evol. 20:2091-2096..
    • (2003) Mol Biol Evol. , vol.20 , pp. 2091-2096
    • Ochman, H.1
  • 76
    • 77949728996 scopus 로고    scopus 로고
    • The hdrRM operon of Streptococcus mutans encodes a novel regulatory system for coordinated competence development and bacteriocin production
    • Okinaga T, Niu G, Xie Z, Qi F, Merritt J. 2010. The hdrRM operon of Streptococcus mutans encodes a novel regulatory system for coordinated competence development and bacteriocin production. J Bacteriol. 192:1844-1852..
    • (2010) J Bacteriol. , vol.192 , pp. 1844-1852
    • Okinaga, T.1    Niu, G.2    Xie, Z.3    Qi, F.4    Merritt, J.5
  • 78
    • 79955718024 scopus 로고    scopus 로고
    • Streptococcus mutans strains recovered from caries-active or caries-free individuals differ in sensitivity to host antimicrobial peptides
    • Phattarataratip E, Olson B, Broffitt B, Qian F, Brogden KA, Drake DR, Levy SM, Banas JA. 2011. Streptococcus mutans strains recovered from caries-active or caries-free individuals differ in sensitivity to host antimicrobial peptides. Mol Oral Microbiol. 26:187-199..
    • (2011) Mol Oral Microbiol. , vol.26 , pp. 187-199
    • Phattarataratip, E.1    Olson, B.2    Broffitt, B.3    Qian, F.4    Brogden, K.A.5    Drake, D.R.6    Levy, S.M.7    Banas, J.A.8
  • 79
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Sawyer S. 1989. Statistical tests for detecting gene conversion. Mol Biol Evol. 6:526-538..
    • (1989) Mol Biol Evol. , vol.6 , pp. 526-538
    • Sawyer, S.1
  • 81
    • 79551476731 scopus 로고    scopus 로고
    • A transcriptional regulator and ABC transporters link stress tolerance, (p)ppGpp, and genetic competence in Streptococcus mutans
    • Seaton K, Ahn SJ, Sagstetter AM, Burne RA. 2011. A transcriptional regulator and ABC transporters link stress tolerance, (p)ppGpp, and genetic competence in Streptococcus mutans. J Bacteriol. 193: 862-874..
    • (2011) J Bacteriol. , Issue.193 , pp. 862-874
    • Seaton, K.1    Ahn, S.J.2    Sagstetter, A.M.3    Burne, R.A.4
  • 83
    • 0025951996 scopus 로고
    • Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
    • Slatkin M, Hudson RR. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555-562..
    • (1991) Genetics , vol.129 , pp. 555-562
    • Slatkin, M.1    Hudson, R.R.2
  • 85
    • 0030620273 scopus 로고    scopus 로고
    • Evolution of high mutation rates in experimental populations of E. coli
    • Sniegowski PD, Gerrish PJ, Lenski RE. 1997. Evolution of high mutation rates in experimental populations of E. coli. Nature 387:703-705..
    • (1997) Nature , vol.387 , pp. 703-705
    • Sniegowski, P.D.1    Gerrish, P.J.2    Lenski, R.E.3
  • 86
    • 79958283181 scopus 로고    scopus 로고
    • Comparative genomic analysis of the Streptococcus dysgalactiae species group: Gene content, molecular adaptation, and promoter evolution
    • Suzuki H, Lefebure T, Hubisz MJ, Pavinski Bitar P, Lang P, Siepel A, Stanhope MJ. 2011. Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution. Genome Biol Evol. 3:168-185..
    • (2011) Genome Biol Evol. , vol.3 , pp. 168-185
    • Suzuki, H.1    Lefebure, T.2    Hubisz, M.J.3    Pavinski Bitar, P.4    Lang, P.5    Siepel, A.6    Stanhope, M.J.7
  • 87
    • 20244389659 scopus 로고    scopus 로고
    • Phylogenetic relationships and genotyping of the genus Streptococcus by sequence determination of the RNase P RNA gene, rnpB
    • Tapp J, Thollesson M, Herrmann B. 2003. Phylogenetic relationships and genotyping of the genus Streptococcus by sequence determination of the RNase P RNA gene, rnpB. Int J Syst Evol Microbiol. 53: 1861-1871..
    • (2003) Int J Syst Evol Microbiol. , vol.53 , pp. 1861-1871
    • Tapp, J.1    Thollesson, M.2    Herrmann, B.3
  • 88
    • 25444524604 scopus 로고    scopus 로고
    • Genome Analysis of Multiple Pathogenic Isolates of Streptococcus Agalactiae: Implications for the Microbial "pan-genome."
    • 46 Co-authors
    • Tettelin H, Masignani V, Cieslewicz MJ, et al. (46 co-authors). 2005. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome." Proc Natl Acad Sci U S A. 102:13950-13955..
    • (2005) Proc Natl Acad Sci U S A. , vol.102 , pp. 13950-13955
    • Tettelin, H.1    Masignani, V.2    Cieslewicz, M.J.3
  • 90
    • 0344464730 scopus 로고    scopus 로고
    • Libsequence: A C++ class library for evolutionary genetic analysis
    • Thornton K. 2003. Libsequence: a C++ class library for evolutionary genetic analysis. Bioinformatics 19:2325-2327..
    • (2003) Bioinformatics , vol.19 , pp. 2325-2327
    • Thornton, K.1
  • 91
    • 0028390494 scopus 로고
    • Role of micro-organisms in caries etiology
    • van Houte J. 1994. Role of micro-organisms in caries etiology. J Dent Res. 73:672-681..
    • (1994) J Dent Res. , vol.73 , pp. 672-681
    • Van Houte, J.1
  • 92
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829..
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 94
    • 23344453718 scopus 로고    scopus 로고
    • A composite-likelihood approach for detecting directional selection from DNA sequence data
    • Zhu L, Bustamante CD. 2005. A composite-likelihood approach for detecting directional selection from DNA sequence data. Genetics 170: 1411-1421..
    • (2005) Genetics , vol.170 , pp. 1411-1421
    • Zhu, L.1    Bustamante, C.D.2


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