메뉴 건너뛰기




Volumn 64, Issue 1, 1998, Pages 63-74

Group I twintrons: Genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs

Author keywords

Didymium; Group I twintron; Horizontal gene transfer; Mobile intron; Naegleria; Ribosomal DNA; Ribozyme

Indexed keywords

CELLS; DNA; PROTOZOA; RNA;

EID: 0345580612     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1656(98)00104-7     Document Type: Review
Times cited : (42)

References (36)
  • 1
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns S.M., Delwiche C.F., Palmer J.D., Pace N.R. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA. 93:1996;9188-9193.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 2
    • 0030812487 scopus 로고    scopus 로고
    • Homing endonucleases: Keeping the house in order
    • Belfort M., Roberts R.J. Homing endonucleases: keeping the house in order. Nucleic Acids Res. 25:1997;3379-3388.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3379-3388
    • Belfort, M.1    Roberts, R.J.2
  • 4
    • 0002754552 scopus 로고    scopus 로고
    • Group I ribozymes: Substrate recognition, catalytic strategies, and comparative mechanistic analysis
    • Cech T.R., Herschlag D. Group I ribozymes: substrate recognition, catalytic strategies, and comparative mechanistic analysis. Nucleic Acids Mol. Biol. 10:1996;1-17.
    • (1996) Nucleic Acids Mol. Biol. , vol.10 , pp. 1-17
    • Cech, T.R.1    Herschlag, D.2
  • 5
    • 0028441183 scopus 로고
    • Representation of the secondary and tertiary structure of group I introns
    • Cech T.R., Damberger S.H., Gutell R.R. Representation of the secondary and tertiary structure of group I introns. Nat. Struct. Biol. 1:1994;273-280.
    • (1994) Nat. Struct. Biol. , vol.1 , pp. 273-280
    • Cech, T.R.1    Damberger, S.H.2    Gutell, R.R.3
  • 6
    • 0023412624 scopus 로고
    • RRNA genes of Naegleria gruberi are carried exclusively on a 14-kilobase-pair plasmid
    • Clark C.G., Cross G.A.M. rRNA genes of Naegleria gruberi are carried exclusively on a 14-kilobase-pair plasmid. Mol. Cell. Biol. 7:1987;3027-3031.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 3027-3031
    • Clark, C.G.1    Cross, G.A.M.2
  • 7
    • 0023950721 scopus 로고
    • Circular ribosomal RNA genes are a general feature of schizopyrenid amoebae
    • Clark C.G., Cross G.A.M. Circular ribosomal RNA genes are a general feature of schizopyrenid amoebae. J. Protozool. 35:1988;326-329.
    • (1988) J. Protozool. , vol.35 , pp. 326-329
    • Clark, C.G.1    Cross, G.A.M.2
  • 8
    • 0344850214 scopus 로고
    • Heterothallism and homothallism: A study of 27 isolates of Didymium iridis, a true slime mold
    • Collins O.R. Heterothallism and homothallism: a study of 27 isolates of Didymium iridis, a true slime mold. Am. J. Bot. 63:1976;138-143.
    • (1976) Am. J. Bot. , vol.63 , pp. 138-143
    • Collins, O.R.1
  • 9
    • 0028503668 scopus 로고
    • Evidence for the ancestral origin of group I introns in the SSU rDNA of Naegleria spp
    • De Jonckheere J.F. Evidence for the ancestral origin of group I introns in the SSU rDNA of Naegleria spp. J. Euk. Microbiol. 41:1994;457-463.
    • (1994) J. Euk. Microbiol. , vol.41 , pp. 457-463
    • De Jonckheere, J.F.1
  • 10
    • 0032518218 scopus 로고    scopus 로고
    • Three different group I introns in the nuclear large subunit ribosomal DNA of the amoeboflagellate Naegleria
    • De Jonckheere J.F., Brown S. Three different group I introns in the nuclear large subunit ribosomal DNA of the amoeboflagellate Naegleria. Nucleic Acids Res. 26:1998;456-461.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 456-461
    • De Jonckheere, J.F.1    Brown, S.2
  • 11
    • 0029115635 scopus 로고
    • Two group I ribozymes with different functions in a nuclear rDNA intron
    • Decatur W.A., Einvik C., Johansen S., Vogt V.M. Two group I ribozymes with different functions in a nuclear rDNA intron. EMBO J. 14:1995;4558-4568.
    • (1995) EMBO J. , vol.14 , pp. 4558-4568
    • Decatur, W.A.1    Einvik, C.2    Johansen, S.3    Vogt, V.M.4
  • 12
    • 0030760922 scopus 로고    scopus 로고
    • Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing
    • Einvik C., Decatur W.A., Embley T.M., Vogt V.M., Johansen S. Naegleria nucleolar introns contain two group I ribozymes with different functions in RNA splicing and processing. RNA. 3:1997;710-720.
    • (1997) RNA , vol.3 , pp. 710-720
    • Einvik, C.1    Decatur, W.A.2    Embley, T.M.3    Vogt, V.M.4    Johansen, S.5
  • 13
    • 0031978817 scopus 로고    scopus 로고
    • Group I-like ribozymes with a novel structural organization perform obligate sequential hydrolytic cleavages at two processing sites
    • Einvik C., Nielsen H., Westhof E., Michel F., Johansen S. Group I-like ribozymes with a novel structural organization perform obligate sequential hydrolytic cleavages at two processing sites. RNA. 4:1998;530-541.
    • (1998) RNA , vol.4 , pp. 530-541
    • Einvik, C.1    Nielsen, H.2    Westhof, E.3    Michel, F.4    Johansen, S.5
  • 15
    • 77956812318 scopus 로고
    • Amebo-flagellates as research partners: The laboratory biology of Naegleria and Teramitus
    • Fulton C. Amebo-flagellates as research partners: the laboratory biology of Naegleria and Teramitus. Methods Cell. Physiol. 4:1970;341-479.
    • (1970) Methods Cell. Physiol. , vol.4 , pp. 341-479
    • Fulton, C.1
  • 16
    • 0028244963 scopus 로고
    • Discovery of group I introns in the nuclear small subunit ribosomal RNA genes of Acanthamoeba
    • Gast R.J., Fuerst P.A., Byers T.J. Discovery of group I introns in the nuclear small subunit ribosomal RNA genes of Acanthamoeba. Nucleic Acids Res. 22:1994;592-596.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 592-596
    • Gast, R.J.1    Fuerst, P.A.2    Byers, T.J.3
  • 17
    • 0030294427 scopus 로고    scopus 로고
    • Subgenus systematics of Acanthamoeba: Four nuclear 18S rDNA sequence types
    • Gast R.J., Ledee D.R., Fuerst P.A., Byers T.J. Subgenus systematics of Acanthamoeba: four nuclear 18S rDNA sequence types. J. Euk. Microbiol. 43:1996;498-504.
    • (1996) J. Euk. Microbiol. , vol.43 , pp. 498-504
    • Gast, R.J.1    Ledee, D.R.2    Fuerst, P.A.3    Byers, T.J.4
  • 18
    • 0344733092 scopus 로고    scopus 로고
    • RNA's revising machinery
    • Hart S. RNA's revising machinery. BioScience. 46:1996;318-321.
    • (1996) BioScience , vol.46 , pp. 318-321
    • Hart, S.1
  • 19
    • 0031414413 scopus 로고    scopus 로고
    • Kinetic and secondary structure analysis of Naegleria andersoni GIR1: A group I ribozyme whose putative biological function is site-specific hydrolysis
    • Jabri E., Aigner S., Cech T.R. Kinetic and secondary structure analysis of Naegleria andersoni GIR1: a group I ribozyme whose putative biological function is site-specific hydrolysis. Biochemistry. 36:1997;16345-16354.
    • (1997) Biochemistry , vol.36 , pp. 16345-16354
    • Jabri, E.1    Aigner, S.2    Cech, T.R.3
  • 20
    • 0029899891 scopus 로고    scopus 로고
    • Genetic manipulation of genomes with rare-cutting endonucleases
    • Jasin M. Genetic manipulation of genomes with rare-cutting endonucleases. Trends Genet. 12:1996;224-228.
    • (1996) Trends Genet. , vol.12 , pp. 224-228
    • Jasin, M.1
  • 21
    • 0028208494 scopus 로고
    • An intron in the nuclear ribosomal DNA of Didymium iridis codes for a group I ribozyme and a novel ribozyme that cooperate in self-splicing
    • Johansen S., Vogt V.M. An intron in the nuclear ribosomal DNA of Didymium iridis codes for a group I ribozyme and a novel ribozyme that cooperate in self-splicing. Cell. 76:1994;725-734.
    • (1994) Cell , vol.76 , pp. 725-734
    • Johansen, S.1    Vogt, V.M.2
  • 22
    • 0026702968 scopus 로고
    • Extrachromosomal ribosomal DNA of Didymium iridis: Sequence analysis of the large subunit ribosomal RNA gene and sub-telomeric region
    • Johansen S., Johansen T., Haugli F. Extrachromosomal ribosomal DNA of Didymium iridis: sequence analysis of the large subunit ribosomal RNA gene and sub-telomeric region. Curr. Genet. 22:1992;305-312.
    • (1992) Curr. Genet. , vol.22 , pp. 305-312
    • Johansen, S.1    Johansen, T.2    Haugli, F.3
  • 23
    • 0026713654 scopus 로고
    • Structure and evolution of myxomycete nuclear group I introns: A model for horizontal transfer by intron homing
    • Johansen S., Johansen T., Haugli F. Structure and evolution of myxomycete nuclear group I introns: a model for horizontal transfer by intron homing. Curr. Genet. 22:1992;297-304.
    • (1992) Curr. Genet. , vol.22 , pp. 297-304
    • Johansen, S.1    Johansen, T.2    Haugli, F.3
  • 25
    • 0030917343 scopus 로고    scopus 로고
    • In vivo mobility of a group I twintron in nuclear ribosomal DNA of the myxomycete Didymium iridis
    • Johansen S., Elde M., Vader A., Haugen P., Haugli K., Haugli F. In vivo mobility of a group I twintron in nuclear ribosomal DNA of the myxomycete Didymium iridis. Mol. Microbiol. 24:1997;737-745.
    • (1997) Mol. Microbiol. , vol.24 , pp. 737-745
    • Johansen, S.1    Elde, M.2    Vader, A.3    Haugen, P.4    Haugli, K.5    Haugli, F.6
  • 26
    • 77956800890 scopus 로고    scopus 로고
    • Group I introns in biotechnology: Prospects of application of ribozymes and rare-cutting homing endonucleases
    • Johansen S., Einvik C., Elde M., Haugen P., Vader A., Haugli F. Group I introns in biotechnology: prospects of application of ribozymes and rare-cutting homing endonucleases. Biotechnol. Ann. Rev. 3:1997;111-150.
    • (1997) Biotechnol. Ann. Rev. , vol.3 , pp. 111-150
    • Johansen, S.1    Einvik, C.2    Elde, M.3    Haugen, P.4    Vader, A.5    Haugli, F.6
  • 27
    • 0030866432 scopus 로고    scopus 로고
    • Evaluating and enhancing ribozyme reaction efficiency in mammalian cells
    • Jones J.T., Sullenger B.A. Evaluating and enhancing ribozyme reaction efficiency in mammalian cells. Nat. Biotechnol. 15:1997;902-905.
    • (1997) Nat. Biotechnol. , vol.15 , pp. 902-905
    • Jones, J.T.1    Sullenger, B.A.2
  • 29
    • 0030452773 scopus 로고    scopus 로고
    • New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: A complete 3D model of the Tetrahymena thermophila ribozyme
    • Lehnert V., Jaeger L., Michel F., Westhof E. New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme. Chem. Biol. 3:1996;993-1009.
    • (1996) Chem. Biol. , vol.3 , pp. 993-1009
    • Lehnert, V.1    Jaeger, L.2    Michel, F.3    Westhof, E.4
  • 31
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel F., Westhof E. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216:1990;585-610.
    • (1990) J. Mol. Biol. , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 32
    • 0024966071 scopus 로고
    • A mobile group I intron in the nuclear rDNA of Physarum polycephalum
    • Muscarella D.E., Vogt V.M. A mobile group I intron in the nuclear rDNA of Physarum polycephalum. Cell. 56:1989;443-454.
    • (1989) Cell , vol.56 , pp. 443-454
    • Muscarella, D.E.1    Vogt, V.M.2
  • 33
    • 0027395847 scopus 로고
    • A mobile group I intron from Physarum polycephalum can insert itself and induce point mutations in the nuclear ribosomal DNA of Saccharomyces cerevisiae
    • Muscarella D.E., Vogt V.M. A mobile group I intron from Physarum polycephalum can insert itself and induce point mutations in the nuclear ribosomal DNA of Saccharomyces cerevisiae. Mol. Cell. Biol. 13:1993;1023-1033.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 1023-1033
    • Muscarella, D.E.1    Vogt, V.M.2
  • 34
    • 0029803204 scopus 로고    scopus 로고
    • Ribozyme-mediated repair of RNAs encoding mutant tumor suppressors
    • Sullenger B.A. Ribozyme-mediated repair of RNAs encoding mutant tumor suppressors. Cytokines Mol. Therapy. 2:1996;201-206.
    • (1996) Cytokines Mol. Therapy , vol.2 , pp. 201-206
    • Sullenger, B.A.1
  • 35
    • 0027987902 scopus 로고
    • Ribozyme-mediated repair of defective mRNA by targeted trans-splicing
    • Sullenger B.A., Cech T.R. Ribozyme-mediated repair of defective mRNA by targeted trans-splicing. Nature. 371:1994;619-622.
    • (1994) Nature , vol.371 , pp. 619-622
    • Sullenger, B.A.1    Cech, T.R.2
  • 36
    • 0028073533 scopus 로고
    • Nucleolar introns from Physarum flavicomum contain insertion elements that may explain how mobile group I introns gained their open reading frames
    • Vader A., Næss J., Haugli K., Haugli F., Johansen S. Nucleolar introns from Physarum flavicomum contain insertion elements that may explain how mobile group I introns gained their open reading frames. Nucleic Acids Res. 22:1994;4553-4559.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4553-4559
    • Vader, A.1    Næss, J.2    Haugli, K.3    Haugli, F.4    Johansen, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.