Study of fungal colonization of wheat kernels in Syria with a focus on Fusarium species

International Journal of Molecular Sciences

Volumn 14, Issue 3, 2013, Pages 5938-5951

  Alkadri, Dima ^a   Nipoti, Paola ^a   Döll, Katharina ^b   Karlovsky, Petr ^b   Prodi, Antonio ^a   Pisi, Annamaria ^a  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

Fusarium chemotypes; Syria; Trichothecenes; Wheat kernels

Indexed keywords

MYCOTOXIN;

ABSIDIA; ALTERNARIA; ARTICLE; ASPERGILLUS; CHAETOMIUM; CLADOSPORIUM; CONTROLLED STUDY; CYLINDROCARPON; EPICOCCUM; FLOWERING; FUNGAL COLONIZATION; FUNGAL STRAIN; FUNGUS ISOLATION; FUSARIUM; FUSARIUM GRAMINEARUM; FUSARIUM HEAD BLIGHT; HUMIDITY; NONHUMAN; PENICILLIUM; POLYMERASE CHAIN REACTION; RHIZOPUS; SEED KERNEL; SYRIAN ARAB REPUBLIC; TRITICUM DURUM; WHEAT; WINTER;

ALTERNARIA; CLADOSPORIUM; FUSARIUM; FUSARIUM CULMORUM; FUSARIUM EQUISETI; FUSARIUM PSEUDOGRAMINEARUM; FUSARIUM TRICINCTUM; TRITICUM AESTIVUM; TRITICUM TURGIDUM SUBSP. DURUM;

EID: 84875499974     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms14035938     Document Type: Article

References (47)

1. El-Khalifeh, M.; El-Ahmed, A.; Al-Saleh, A.; Nachit, M. Use of AFLPs to differentiate between Fusarium species causing root rot disease on durum wheat (Triticum turgidum L. var. durum). Afr. J. Biotechnol. 2009, 8, 4347-4352.
2. SYRIA: Wheat Production in 2008/09 Declines Owing to Season-Long Drought. Available online: http://www.pecad.fas.usda.gov/highlights/2008/05/Syria_may2008.htm (accessed on 9 May 2008).
3. Fertilizer Use by Crop in the Syrian Arab Republic. Food and Agriculture Organization (FAO). Available online: http://www.fao.org/docrep/005/Y4732E/y4732e06.htm (accessed on 8 July 2003).
4. National Agricultural Policy Center (NAPC). Study on Supply and Demand Prospects for the Major Syrian Agricultural Products. National Agricultural Policy Center, Syria, 2009.
5. Goswami, R.; Kistler, H. Heading for disaster: Fusarium graminearum on cereal crops. Molecular. Plant Pathol. 2004, 5, 515-525.
6. El-Khalifeh, M.; El-Ahmed, A.; Yabrak, M.; Nachit, M. Variation of cultural and morphological characteristics in Fusarium spp. pathogens of common root rot disease on wheat in Syria. Arab. J. Plant Prot. 2006, 24, 67-74.
7. Nicholson, P.; Chandler, E.; Draeger, R.; Gosman, N.; Simpson, D.; Thomsett, M.; Wilson, A. Molecular tools to study epidemiology and toxicology of Fusarium head blight of cereals. Eur. J. Plant Pathol. 2003, 109, 691-703.
8. Desjardins, A. Fusarium Mycotoxins: Chemistry, Genetics and Biology; APS Press: St. Paul, MN, USA, 2006; p. 260.
9. Saberi-Riseh, R.; Javan-Nikkhah, M.; Heidarian, R.; Hosseini, S.; Soleimani, P. Detection of fungal infectious agent of wheat grains in store-pits of Markazi province, Iran. Commun. Agric. Appl. Biol. Sci. 2004, 69, 541-544.
10. Bai, G.; Shaner, G. Scab of wheat: Prospects for control. Plant Dis. 1994, 78, 760-766.
11. Talas, F.; Longin, F.; Miedaner, T. Sources of resistance to Fusarium head blight within Syrian durum wheat landraces. Plant Breed. 2011, 130, 398-400.
12. Alkadri, D. Fusarium Species Responsible for Mycotoxin Production in Wheat Crop: Involvement in Food Safety. Ph.D. Dissertation, University of Bologna, Bologna, Italy, 2012.
13. Stack, R.W.; Elias, E.M.; Fetch, J.M.; Miller, J.D.; Joppa, L.R. Fusarium head blight reaction of Langdon durum-Triticum dicoccoides chromosome substitution lines. Crop Sci. 2002, 42, 637-642.
14. Bottalico, A.; Perrone, G. Toxigenic Fusarium species and mycotoxins associated with head blight in small-grain cereals in Europe. Eur. J. Plant Pathol. 2002, 108, 611-624.
15. Arabi, M.; Jawhar, M. Heterogeneity in Fusarium species as revealed by inter-retrotransposon amplified polymorphism (irap) analysis. J. Plant Pathol. 2010, 92, 753-757.
16. Quarta, A.; Mita, G.; Haidukowski, M.; Santino, A.; Mulè, G.; Visconti, M. Assessment of trichothecene chemotypes of Fusarium culmorum occurring in Europe. Food Addit. Contam. 2005, 22, 309-315.
17. Prodi, A.; Salomoni, D.; Alkadri, D.; Tonti, S.; Nipoti, P.; Pisi, A.; Pancaldi, D. Presence of deoxynivalenol and nivalenol chemotypes of Fusarium culmorum isolated from durum wheat in some Italian regions. J. Plant Pathol. 2010, 92, 96.
18. Jennings, P.; Coates, M.; Chandler, A.; Turner, J.; Nicholson, P. Determination of deoxynivalenol and nivalenol chemotypes of Fusarium culmorum isolates from England and Wales by PCR assay. Plant Pathol. 2004, 53, 182-190.
19. Pasquali, M.; Giraud, C.; Brochot, E.; Cocco, L.; Hoffmann, T.; Bohn, T. Genetic Fusarium chemotyping as a useful tool for predicting nivalenol contamination in winter wheat. Int. J. Food Microbiol. 2010, 137, 246-253.
20. Starkey, D.; Ward, T.; Aoki, T.; Gale, L.; Kistler, H.; Geiser, D.; Suga, H.; Toth, B.; Varga, J.; O'Donnell, K. Global molecular surveillance reveals novel Fusarium head blight species and trichothecene toxin diversity. Fungal Genet. Biol. 2007, 44, 1191-1204.
21. Niessen, L.; Vogel, R. Group specific PCR-detection of potential trichothecene producing Fusarium-species in pure cultures and cereal samples. Syst. Appl. Microbiol. 1998, 21, 618-631.
22. Tokai, T.; Takahashi-Ando, N.; Izawa, M.; Kamakura, T.; Yoshida, M.; Fugimura M.; Kimura, M. 4-O-acetylation and 3-O-acetylation of trichothecenes by trichothecene 15-O-acetyltransferase encoded by Fusarium Tri3. Biosci. Biotechnol. Biochem. 2008, 72, 2485-2489.
23. Alexander, N.J.; McCormick, S.P.; Waalwijk, C.; van der Lee, T.; Proctor, R.H. The genetic basis for 3-ADON and 15-ADON trichothecene chemotypes in Fusarium. Fungal Genet. Biol. 2011, 48, 485-495.
24. Bakan, B.; Giraud-Delville, C.; Pinson, L.; Richard-Molard, D.; Fournier, E.; Brygoo, Y. Identification by PCR of Fusarium culmorum strains producing large and small amounts of deoxynivalenol. Appl. Environ. Microb. 2002, 68, 5472-5479.
25. Nielsen, K.; Thrane, U. Fast methods for screening of trichothecenes in fungal cultures using gas chromatography-tandem mass spectrometry. J. Chromatogr. A 2001, 929, 75-87.
26. Mugrabi de Kuppler, A.L.; Steiner, U.; Sulyok, M.; Krska, R.; Oerke, E.C. Genotyping and phenotyping of Fusarium graminearum isolates from Germany related to their mycotoxin biosynthesis. Int. J. Food Microbiol. 2011, 151, 78-86.
27. Lee, T.; Han, Y.K.; Kim, K.H.; Yun, S.H.; Lee, Y.W. Tri13 and Tri7 determine deoxynivalenol-and nivalenol-producing chemotypes of Gibberella zeae. Appl. Environ. Microbiol. 2002, 68, 2148-2154.
28. Haratian, M.; Sharifnabi, B.; Alizadeh, A.; Safaie, N. PCR Analysis of the Tri13 gene to determine the genetic potential of Fusarium graminearum isolates from Iran to produce nivalenol and deoxynivalenol. Mycopathologia 2008, 166, 109-116.
29. Waalwijk, C.; Kastelein, P.; de Vries, I.; Kerenyi, Z.; van der Lee, T.; Hesselink, T.; Kohl, J.; Kema, G. Major changes in Fusarium spp. in wheat in the Netherlands. Eur. J. Plant Pathol. 2003, 109, 743-754.
30. Prodi, A.; Tonti, S.; Nipoti, P.; Pancaldi, D.; Pisi, A. Identification of deoxynivalenol and nivalenol producing chemotypes of Fusarium graminearum isolates from durum wheat in a restricted area of northern Italy. J. Plant Pathol. 2009, 91, 727-732.
31. Gale, L.; Ward, T.; Balmas, V.; Kistler, H. Population subdivision of Fusarium graminearum sensu stricto in the upper Midwestern United States. Phytopathology 2007, 97, 1434-1439.
32. Yli-Mattila, T.; O'Donnell, K.; Ward, T.; Gagkaeva, T. Trichothecene chemotype composition of Fusarium graminearum and related species in Finland and Russia. J. Plant Pathol. 2008, 90, S60.
33. Langseth, W.; Bernhoft, A.; Rundberget, T.; Kosiak, B.; Gareis, M. Mycotoxin production and cytotoxicity of Fusarium strains isolated from Norwegian cereals. Mycopathologia 1999, 144, 103-113.
34. Marín, P.; Moretti, A.; Ritieni, A.; Jurado, M.; Vázquez, C.; González-Jaén, M.T. Phylogenetic analyses and toxigenic profiles of Fusarium equiseti and Fusarium acuminatum isolated from cereals from Southern Europe. Food Microbiol. 2012, 31, 229-237.
35. Monds, R.D.; Cromey, M.G.; Lauren, D.R.; di Menna, M.; Marshall, J. Fusarium graminearum, F. cortaderiae and F. pseudograminearum in New Zealand: Molecular phylogenetic analysis, mycotoxin chemotypes and co-existence of species. Mycol. Res. 2005, 109, 410-420.
36. Pancaldi, D.; Tonti, S.; Prodi, A.; Salomoni, D.; Dal Prà, M.; Nipoti, P.; Alberti, I.; Pisi, A. Survey of the main causal agents of Fusarium head blight of durum wheat around Bologna, northern Italy. Phytopathol. Medit. 2010, 49, 258-266.
37. Watanabe, T. Pictorial Atlas of Soil and Feed Fungi, Morphology of Cultured Fungi and Key to Species, 2nd ed.; CRC Press: London, UK, 2002; p. 486.
38. Leslie, J.; Summerell, B. The Fusarium Laboratory Manual; Blackwell Publishing Professional: Ames, IA, USA, 2006; p. 388.
39. Prodi, A.; Purahong, W.; Tonti, S.; Salomoni, D.; Nipoti, P.; Covarelli, L.; Pisi, A. Difference in chemotype composition of Fusarium graminearum populations isolated from durum wheat in adjacent areas separated by the Apennines in Northern-Central Italy. J. Plant Pathol. 2011, 27, 354-356.
40. Brandfass, C.; Karlovsky, P. Upscaled CTAB-based DNA extraction and real-time PCR assays for Fusarium culmorum and F. graminearum DNA in plant material with reduced sampling error. Int. J. Mol. Sci. 2008, 9, 2306-2321.
41. Nicholson, P.; Simpson, D.; Weston, G.; Rezanoor, G.; Lees, A.; Parry, D.; Joyce, D. Detection and quantification of Fusarium culmorum and Fusarium graminearum in cereals using PCR assays. Physiol. Mol. Plant Pathol. 1998, 53, 17-37.
42. Mishra, P.; Fox, R.; Culham, A. Development of a PCR-based assay for rapid and reliable identification of pathogenic Fusariaum. Fems. Microbiol. Lett. 2003, 218, 329-332.
43. Aoki, T.; O'Donnell, K. Morphological and molecular characterization of Fusarium pseudograminearum sp. nov., formerly recognized as the Group 1 population of F. graminearum. Mycologia 1999, 91, 597-609.
44. Mule, G.; Susca, A.; Stea, G.; Moretti, A. Species-specific PCR assay based on the calmodulin partial gene for identification of Fusarium verticillioides, F. proliferatum and F. subglutinans. Eur. J. Plant Pathol. 2004, 110, 495-502.
45. Adejumo, T.O.; Hettwer, U.; Karlovsky, P. Survey of maize from south-western Nigeria for zearalenone, α-and β-zearalenols, fumonisin B1 and enniatins produced by Fusarium species. Food Addit. Contam. 2007, 24, 993-1000.
46. Klötzel, M.; Lauber, U.; Humpf, H.U. A new solid phase extraction clean-up method for the determination of 12 type A and B trichothecenes in cereals and cereal-based food by LC-MS/MS. Mol. Nutr. Food Res. 2006, 50, 261-269.
47. Rasmussen, P.H.; Nielsen, K.F.; Ghorbani, F.; Spliid, N.H.; Nielsen, G.C.; Jørgensen, L.N. Occurrence of different trichothecenes and deoxynivalenol-3-β-D-glucoside in naturally and artificially contaminated Danish cereal grains and whole maize plants. Mycotoxin Res. 2012, 28, 181-190.