-
1
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
D. W. Huang, B. T. Sherman, R. A. Lempicki, Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37, 1-13 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
2
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
M. Ashburner, C. A. Ball, J. A. Blake, D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, G. Sherlock, Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25, 25-29 (2000). (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
3
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
M. Kanehisa, S. Goto, Y. Sato, M. Furumichi, M. Tanabe, KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40, D109-D114 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
4
-
-
0033518234
-
From molecular to modular cell biology
-
L. H. Hartwell, J. J. Hopfield, S. Leibler, A. W. Murray, From molecular to modular cell biology. Nature 402, C47-C52 (1999).
-
(1999)
Nature
, vol.402
-
-
Hartwell, L.H.1
Hopfield, J.J.2
Leibler, S.3
Murray, A.W.4
-
5
-
-
33750887331
-
A functional RNAi screen for regulators of receptor tyrosine kinase and ERK signalling
-
DOI 10.1038/nature05280, PII NATURE05280
-
A. Friedman, N. Perrimon, A functional RNAi screen for regulators of receptor tyrosine kinase and ERK signalling. Nature 444, 230-234 (2006). (Pubitemid 44722065)
-
(2006)
Nature
, vol.444
, Issue.7116
, pp. 230-234
-
-
Friedman, A.1
Perrimon, N.2
-
6
-
-
80054924599
-
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling
-
A. A. Friedman, G. Tucker, R. Singh, D. Yan, A. Vinayagam, Y. Hu, R. Binari, P. Hong, X. Sun, M. Porto, S. Pacifico, T. Murali, R. L. Finley Jr., J. M. Asara, B. Berger, N. Perrimon, Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. Sci. Signal. 4, rs10 (2011).
-
(2011)
Sci. Signal.
, vol.4
-
-
Friedman, A.A.1
Tucker, G.2
Singh, R.3
Yan, D.4
Vinayagam, A.5
Hu, Y.6
Binari, R.7
Hong, P.8
Sun, X.9
Porto, M.10
Pacifico, S.11
Murali, T.12
Finley Jr., R.L.13
Asara, J.M.14
Berger, B.15
Perrimon, N.16
-
7
-
-
20144372620
-
High-throughput mapping of a dynamic signaling network in mammalian cells
-
DOI 10.1126/science.1105776
-
M. Barrios-Rodiles, K. R. Brown, B. Ozdamar, R. Bose, Z. Liu, R. S. Donovan, F. Shinjo, Y. Liu, J. Dembowy, I. W. Taylor, V. Luga, N. Przulj, M. Robinson, H. Suzuki, Y. Hayashizaki, I. Jurisica, J. L.Wrana, High-throughput mapping of a dynamic signaling network in mammalian cells. Science 307, 1621-1625 (2005). (Pubitemid 40354744)
-
(2005)
Science
, vol.307
, Issue.5715
, pp. 1621-1625
-
-
Barrios-Rodiles, M.1
Brown, K.R.2
Ozdamar, B.3
Bose, R.4
Liu, Z.5
Donovan, R.S.6
Shinjo, F.7
Liu, Y.8
Dembowy, J.9
Taylor, I.W.10
Luga, V.11
Przulj, N.12
Robinson, M.13
Suzuki, H.14
Hayashizaki, Y.15
Jurisica, I.16
Wrana, J.L.17
-
8
-
-
79960245388
-
Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the GRB2 adaptor
-
N. Bisson, D. A. James, G. Ivosev, S. A. Tate, R. Bonner, L. Taylor, T. Pawson, Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the GRB2 adaptor. Nat. Biotechnol. 29, 653-658 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 653-658
-
-
Bisson, N.1
James, D.A.2
Ivosev, G.3
Tate, S.A.4
Bonner, R.5
Taylor, L.6
Pawson, T.7
-
10
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
DOI 10.1016/j.cell.2006.09.026, PII S0092867406012748
-
J. V. Olsen, B. Blagoev, F. Gnad, B. Macek, C. Kumar, P. Mortensen, M. Mann, Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127, 635-648 (2006). (Pubitemid 44647421)
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
11
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
D. W. Huang, B. T. Sherman, R. A. Lempicki, Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4, 44-57 (2009).
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
12
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
DOI 10.1073/pnas.0506580102
-
A. Subramanian, P. Tamayo, V. K. Mootha, S. Mukherjee, B. L. Ebert, M. A. Gillette, A. Paulovich, S. L. Pomeroy, T. R. Golub, E. S. Lander, J. P. Mesirov, Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. U.S.A. 102, 15545-15550 (2005). (Pubitemid 41528093)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
13
-
-
3142687604
-
PINdb: A database of nuclear protein complexes from human and yeast
-
DOI 10.1093/bioinformatics/bth114
-
P. V. Luc, P. Tempst, PINdb: A database of nuclear protein complexes from human and yeast. Bioinformatics 20, 1413-1415 (2004). (Pubitemid 38931410)
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1413-1415
-
-
Luc, P.-V.1
Tempst, P.2
-
14
-
-
63349085550
-
Up-to-date catalogues of yeast protein complexes
-
S. Pu, J. Wong, B. Turner, E. Cho, S. J. Wodak, Up-to-date catalogues of yeast protein complexes. Nucleic Acids Res. 37, 825-831 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 825-831
-
-
Pu, S.1
Wong, J.2
Turner, B.3
Cho, E.4
Wodak, S.J.5
-
15
-
-
75549091794
-
CORUM: The comprehensive resource of mammalian protein complexes - 2009
-
A. Ruepp, B. Waegele, M. Lechner, B. Brauner, I. Dunger-Kaltenbach, G. Fobo, G. Frishman, C. Montrone, H. W. Mewes, CORUM: The comprehensive resource of mammalian protein complexes - 2009. Nucleic Acids Res. 38, D497-D501 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Ruepp, A.1
Waegele, B.2
Lechner, M.3
Brauner, B.4
Dunger-Kaltenbach, I.5
Fobo, G.6
Frishman, G.7
Montrone, C.8
Mewes, H.W.9
-
16
-
-
80155171417
-
A protein complex network of Drosophila melanogaster
-
K. G. Guruharsha, J. F. Rual, B. Zhai, J. Mintseris, P. Vaidya, N. Vaidya, C. Beekman, C. Wong, D. Y. Rhee, O. Cenaj, E. McKillip, S. Shah, M. Stapleton, K. H. Wan, C. Yu, B. Parsa, J. W. Carlson, X. Chen, B. Kapadia, K. VijayRaghavan, S. P. Gygi, S. E. Celniker, R. A. Obar, S. Artavanis-Tsakonas, A protein complex network of Drosophila melanogaster. Cell 147, 690-703 (2011).
-
(2011)
Cell
, vol.147
, pp. 690-703
-
-
Guruharsha, K.G.1
Rual, J.F.2
Zhai, B.3
Mintseris, J.4
Vaidya, P.5
Vaidya, N.6
Beekman, C.7
Wong, C.8
Rhee, D.Y.9
Cenaj, O.10
McKillip, E.11
Shah, S.12
Stapleton, M.13
Wan, K.H.14
Yu, C.15
Parsa, B.16
Carlson, J.W.17
Chen, X.18
Kapadia, B.19
Vijayraghavan, K.20
Gygi, S.P.21
Celniker, S.E.22
Obar, R.A.23
Artavanis-Tsakonas, S.24
more..
-
17
-
-
80052142945
-
An integrative approach to ortholog prediction for disease-focused and other functional studies
-
Y. Hu, I. Flockhart, A. Vinayagam, C. Bergwitz, B. Berger, N. Perrimon, S. E. Mohr, An integrative approach to ortholog prediction for disease-focused and other functional studies. BMC Bioinformatics 12, 357 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.357
-
-
Hu, Y.1
Flockhart, I.2
Vinayagam, A.3
Bergwitz, C.4
Berger, B.5
Perrimon, N.6
Mohr, S.E.7
-
18
-
-
20444504323
-
Uncovering the overlapping community structure of complex networks in nature and society
-
DOI 10.1038/nature03607
-
G. Palla, I. Derényi, I. Farkas, T. Vicsek, Uncovering the overlapping community structure of complex networks in nature and society. Nature 435, 814-818 (2005). (Pubitemid 40839731)
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 814-818
-
-
Palla, G.1
Derenyi, I.2
Farkas, I.3
Vicsek, T.4
-
19
-
-
13844314048
-
Conserved patterns of protein interaction in multiple species
-
DOI 10.1073/pnas.0409522102
-
R. Sharan, S. Suthram, R. M. Kelley, T. Kuhn, S. McCuine, P. Uetz, T. Sittler, R. M. Karp, T. Ideker, Conserved patterns of protein interaction in multiple species. Proc. Natl. Acad. Sci. U.S.A. 102, 1974-1979 (2005). (Pubitemid 40261997)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.6
, pp. 1974-1979
-
-
Sharan, R.1
Suthram, S.2
Kelley, R.M.3
Kuhn, T.4
McCuine, S.5
Uetz, P.6
Sittler, T.7
Karp, R.M.8
Ideker, T.9
-
20
-
-
75949120438
-
How and when should interactome-derived clusters be used to predict functional modules and protein function?
-
J. Song, M. Singh, How and when should interactome-derived clusters be used to predict functional modules and protein function? Bioinformatics 25, 3143-3150 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 3143-3150
-
-
Song, J.1
Singh, M.2
-
21
-
-
33645732240
-
Modeling cellular machinery through biological network comparison
-
R. Sharan, T. Ideker, Modeling cellular machinery through biological network comparison. Nat. Biotechnol. 24, 427-433 (2006).
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 427-433
-
-
Sharan, R.1
Ideker, T.2
-
22
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
DOI 10.1038/nrg1272
-
A. L. Barabási, Z. N. Oltvai, Network biology: Understanding the cell's functional organization. Nat. Rev. Genet. 5, 101-113 (2004). (Pubitemid 38160277)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.2
, pp. 101-113
-
-
Barabasi, A.-L.1
Oltvai, Z.N.2
-
23
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
DOI 10.1038/nature02026
-
W. K. Huh, J. V. Falvo, L. C. Gerke, A. S. Carroll, R. W. Howson, J. S. Weissman, E. K. O'Shea, Global analysis of protein localization in budding yeast. Nature 425, 686-691 (2003). (Pubitemid 37314307)
-
(2003)
Nature
, vol.425
, Issue.6959
, pp. 686-691
-
-
Huh, W.-K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'Shea, E.K.7
-
24
-
-
79952474742
-
Protein complexes are central in the yeast genetic landscape
-
M. Michaut, A. Baryshnikova, M. Costanzo, C. L. Myers, B. J. Andrews, C. Boone, G. D. Bader, Protein complexes are central in the yeast genetic landscape. PLoS Comput. Biol. 7, e1001092 (2011).
-
(2011)
PLoS Comput. Biol.
, vol.7
-
-
Michaut, M.1
Baryshnikova, A.2
Costanzo, M.3
Myers, C.L.4
Andrews, B.J.5
Boone, C.6
Bader, G.D.7
-
25
-
-
0242490780
-
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
-
DOI 10.1101/gr.1239303
-
P. Shannon, A. Markiel, O. Ozier, N. S. Baliga, J. T. Wang, D. Ramage, N. Amin, B. Schwikowski, T. Ideker, Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504 (2003). (Pubitemid 37428274)
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
26
-
-
84857674934
-
ICanPlot: Visual exploration of high-throughput omics data using interactive Canvas plotting
-
A. U. Sinha, S. A. Armstrong, iCanPlot: Visual exploration of high-throughput omics data using interactive Canvas plotting. PLoS One 7, e31690 (2012).
-
(2012)
PLoS One
, vol.7
-
-
Sinha, A.U.1
Armstrong, S.A.2
-
27
-
-
77956548953
-
An interactive web-based network browser
-
C. T. Lopes, M. Franz, F. Kazi, S. L. Donaldson, Q. Morris, G. D. Bader, Cytoscape Web: An interactive web-based network browser. Bioinformatics 26, 2347-2348 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2347-2348
-
-
Lopes, C.T.1
Franz, M.2
Kazi, F.3
Donaldson, S.L.4
Morris, Q.5
Bader, G.D.6
Web, C.7
-
28
-
-
80855128256
-
Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome
-
T. Glatter, R. B. Schittenhelm, O. Rinner, K. Roguska, A. Wepf, M. A. Jünger, K. Köhler, I. Jevtov, H. Choi, A. Schmidt, A. I. Nesvizhskii, H. Stocker, E. Hafen, R. Aebersold, M. Gstaiger, Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome. Mol. Syst. Biol. 7, 547 (2011).
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 547
-
-
Glatter, T.1
Schittenhelm, R.B.2
Rinner, O.3
Roguska, K.4
Wepf, A.5
Jünger, M.A.6
Köhler, K.7
Jevtov, I.8
Choi, H.9
Schmidt, A.10
Nesvizhskii, A.I.11
Stocker, H.12
Hafen, E.13
Aebersold, R.14
Gstaiger, M.15
-
29
-
-
0042178312
-
Protein phosphatase 2A positively regulates Ras signaling by dephosphorylating KSR1 and Raf-1 on critical 14-3-3 binding sites
-
DOI 10.1016/S0960-9822(03)00535-9
-
S. Ory, M. Zhou, T. P. Conrads, T. D. Veenstra, D. K. Morrison, Protein phosphatase 2A positively regulates Ras signaling by dephosphorylating KSR1 and Raf-1 on critical 14-3-3 binding sites. Curr. Biol. 13, 1356-1364 (2003). (Pubitemid 37029425)
-
(2003)
Current Biology
, vol.13
, Issue.16
, pp. 1356-1364
-
-
Ory, S.1
Zhou, M.2
Conrads, T.P.3
Veenstra, T.D.4
Morrison, D.K.5
-
30
-
-
77953593628
-
MAPK signaling to the early secretory pathway revealed by kinase/phosphatase functional screening
-
H. Farhan, M. W. Wendeler, S. Mitrovic, E. Fava, Y. Silberberg, R. Sharan, M. Zerial, H. P. Hauri, MAPK signaling to the early secretory pathway revealed by kinase/phosphatase functional screening. J. Cell Biol. 189, 997-1011 (2010).
-
(2010)
J. Cell Biol.
, vol.189
, pp. 997-1011
-
-
Farhan, H.1
Wendeler, M.W.2
Mitrovic, S.3
Fava, E.4
Silberberg, Y.5
Sharan, R.6
Zerial, M.7
Hauri, H.P.8
-
31
-
-
71549173114
-
Acting out of character: Regulatory roles of nuclear pore complex proteins
-
N. Xylourgidis, M. Fornerod, Acting out of character: Regulatory roles of nuclear pore complex proteins. Dev. Cell 17, 617-625 (2009).
-
(2009)
Dev. Cell
, vol.17
, pp. 617-625
-
-
Xylourgidis, N.1
Fornerod, M.2
-
32
-
-
0033572644
-
Drosophila tumor suppressor PTEN controls cell size and number by antagonizing the Chico/PI3-kinase signaling pathway
-
DOI 10.1101/gad.13.24.3244
-
D. C. Goberdhan, N. Paricio, E. C. Goodman, M. Mlodzik, C. Wilson, Drosophila tumor suppressor PTEN controls cell size and number by antagonizing the Chico/PI3-kinase signaling pathway. Genes Dev. 13, 3244-3258 (1999). (Pubitemid 30030446)
-
(1999)
Genes and Development
, vol.13
, Issue.24
, pp. 3244-3258
-
-
Goberdhan, D.C.I.1
Paricio, N.2
Goodman, E.C.3
Mlodzik, M.4
Wilson, C.5
-
33
-
-
0034680008
-
The conserved PI3'K/PTEN/Akt signaling pathway regulates both cell size and survival in Drosophila
-
S. E. Scanga, L. Ruel, R. C. Binari, B. Snow, V. Stambolic, D. Bouchard, M. Peters, B. Calvieri, T. W. Mak, J. R. Woodgett, A. S. Manoukian, The conserved PI3'K/PTEN/Akt signaling pathway regulates both cell size and survival in Drosophila. Oncogene 19, 3971-3977 (2000).
-
(2000)
Oncogene
, vol.19
, pp. 3971-3977
-
-
Scanga, S.E.1
Ruel, L.2
Binari, R.C.3
Snow, B.4
Stambolic, V.5
Bouchard, D.6
Peters, M.7
Calvieri, B.8
Mak, T.W.9
Woodgett, J.R.10
Manoukian, A.S.11
-
34
-
-
0035916357
-
An evolutionarily conserved function of the drosophila insulin receptor and insulin-like peptides in growth control
-
DOI 10.1016/S0960-9822(01)00068-9
-
W. Brogiolo, H. Stocker, T. Ikeya, F. Rintelen, R. Fernandez, E. Hafen, An evolutionarily conserved function of the Drosophila insulin receptor and insulin-like peptides in growth control. Curr. Biol. 11, 213-221 (2001). (Pubitemid 32185323)
-
(2001)
Current Biology
, vol.11
, Issue.4
, pp. 213-221
-
-
Brogiolo, W.1
Stocker, H.2
Ikeya, T.3
Rintelen, F.4
Fernandez, R.5
Hafen, E.6
-
35
-
-
0042161896
-
Control of cell number by Drosophila FOXO: Downstream and feedback regulation of the insulin receptor pathway
-
DOI 10.1101/gad.1098703
-
O. Puig, M. T. Marr, M. L. Ruhf, R. Tjian, Control of cell number by Drosophila FOXO: Downstream and feedback regulation of the insulin receptor pathway. Genes Dev. 17, 2006-2020 (2003). (Pubitemid 36999327)
-
(2003)
Genes and Development
, vol.17
, Issue.16
, pp. 2006-2020
-
-
Puig, O.1
Marr, M.T.2
Ruhf, M.L.3
Tjian, R.4
-
36
-
-
0242539698
-
The Drosophila forkhead transcription factor FOXO mediates the reduction in cell number associated with reduced insulin signaling
-
M. A. Jünger, F. Rintelen, H. Stocker, J. D. Wasserman, M. Végh, T. Radimerski, M. E. Greenberg, E. Hafen, The Drosophila forkhead transcription factor FOXO mediates the reduction in cell number associated with reduced insulin signaling. J. Biol. 2, 20 (2003).
-
(2003)
J. Biol.
, vol.2
, pp. 20
-
-
Jünger, M.A.1
Rintelen, F.2
Stocker, H.3
Wasserman, J.D.4
Végh, M.5
Radimerski, T.6
Greenberg, M.E.7
Hafen, E.8
-
37
-
-
0035805162
-
Drosophila Tsc1 functions with Tsc2 to antagonize insulin signaling in regulating cell growth, cell proliferation, and organ size
-
DOI 10.1016/S0092-8674(01)00333-6
-
C. J. Potter, H. Huang, T. Xu, Drosophila Tsc1 functions with Tsc2 to antagonize insulin signaling in regulating cell growth, cell proliferation, and organ size. Cell 105, 357-368 (2001). (Pubitemid 32455342)
-
(2001)
Cell
, vol.105
, Issue.3
, pp. 357-368
-
-
Potter, C.J.1
Huang, H.2
Xu, T.3
-
38
-
-
66149094692
-
Integration of insulin receptor/Foxo signaling and dMyc activity during muscle growth regulates body size in Drosophila
-
F. Demontis, N. Perrimon, Integration of insulin receptor/Foxo signaling and dMyc activity during muscle growth regulates body size in Drosophila. Development 136, 983-993 (2009).
-
(2009)
Development
, vol.136
, pp. 983-993
-
-
Demontis, F.1
Perrimon, N.2
-
39
-
-
34147187417
-
TOR signaling promotes protein synthesis but not glucose or amino acid import, in Drosophila
-
D. J. Hall, S. S. Grewal, A. F. de la Cruz, B. A. Edgar, Rheb-TOR signaling promotes protein synthesis, but not glucose or amino acid import, in Drosophila. BMC Biol. 5, 10 (2007).
-
(2007)
BMC Biol.
, vol.5
, pp. 10
-
-
Hall, D.J.1
Grewal, S.S.2
De La Cruz, A.F.3
Edgar Rheb, B.A.4
-
40
-
-
80052592002
-
A directed protein interaction network for investigating intracellular signal transduction
-
A. Vinayagam, U. Stelzl, R. Foulle, S. Plassmann, M. Zenkner, J. Timm, H. E. Assmus, M. A. Andrade-Navarro, E. E. Wanker, A directed protein interaction network for investigating intracellular signal transduction. Sci. Signal. 4, rs8 (2011).
-
(2011)
Sci. Signal.
, vol.4
-
-
Vinayagam, A.1
Stelzl, U.2
Foulle, R.3
Plassmann, S.4
Zenkner, M.5
Timm, J.6
Assmus, H.E.7
Andrade-Navarro, M.A.8
Wanker, E.E.9
-
41
-
-
67649634849
-
Defining the human deubiquitinating enzyme interaction landscape
-
M. E. Sowa, E. J. Bennett, S. P. Gygi, J. W. Harper, Defining the human deubiquitinating enzyme interaction landscape. Cell 138, 389-403 (2009).
-
(2009)
Cell
, vol.138
, pp. 389-403
-
-
Sowa, M.E.1
Bennett, E.J.2
Gygi, S.P.3
Harper, J.W.4
-
42
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
DOI 10.1016/j.cell.2005.08.029, PII S0092867405008664
-
U. Stelzl, U. Worm, M. Lalowski, C. Haenig, F. H. Brembeck, H. Goehler, M. Stroedicke, M. Zenkner, A. Schoenherr, S. Koeppen, J. Timm, S. Mintzlaff, C. Abraham, N. Bock, S. Kietzmann, A. Goedde, E. Toksöz, A. Droege, S. Krobitsch, B. Korn, W. Birchmeier, H. Lehrach, E. E. Wanker, A human protein-protein interaction network: A resource for annotating the proteome. Cell 122, 957-968 (2005). (Pubitemid 41345212)
-
(2005)
Cell
, vol.122
, Issue.6
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.H.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
Timm, J.11
Mintzlaff, S.12
Abraham, C.13
Bock, N.14
Kietzmann, S.15
Goedde, A.16
Toksoz, E.17
Droege, A.18
Krobitsch, S.19
Korn, B.20
Birchmeier, W.21
Lehrach, H.22
Wanker, E.E.23
more..
-
43
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
A. C. Gavin, P. Aloy, P. Grandi, R. Krause, M. Boesche, M. Marzioch, C. Rau, L. J. Jensen, S. Bastuck, B. Dümpelfeld, A. Edelmann, M. A. Heurtier, V. Hoffman, C. Hoefert, K. Klein, M. Hudak, A. M. Michon, M. Schelder, M. Schirle, M. Remor, T. Rudi, S. Hooper, A. Bauer, T. Bouwmeester, G. Casari, G. Drewes, G. Neubauer, J. M. Rick, B. Kuster, P. Bork, R. B. Russell, G. Superti-Furga, Proteome survey reveals modularity of the yeast cell machinery. Nature 440, 631-636 (2006).
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dümpelfeld, B.10
Edelmann, A.11
Heurtier, M.A.12
Hoffman, V.13
Hoefert, C.14
Klein, K.15
Hudak, M.16
Michon, A.M.17
Schelder, M.18
Schirle, M.19
Remor, M.20
Rudi, T.21
Hooper, S.22
Bauer, A.23
Bouwmeester, T.24
Casari, G.25
Drewes, G.26
Neubauer, G.27
Rick, J.M.28
Kuster, B.29
Bork, P.30
Russell, R.B.31
Superti-Furga, G.32
more..
-
44
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
N. J. Krogan, G. Cagney, H. Yu, G. Zhong, X. Guo, A. Ignatchenko, J. Li, S. Pu, N. Datta, A. P. Tikuisis, T. Punna, J. M. Peregrín-Alvarez, M. Shales, X. Zhang, M. Davey, M. D. Robinson, A. Paccanaro, J. E. Bray, A. Sheung, B. Beattie, D. P. Richards, V. Canadien, A. Lalev, F. Mena, P. Wong, A. Starostine, M. M. Canete, J. Vlasblom, S. Wu, C. Orsi, S. R. Collins, S. Chandran, R. Haw, J. J. Rilstone, K. Gandi, N. J. Thompson, G. Musso, P. St Onge, S. Ghanny, M. H. Lam, G. Butland, A. M. Altaf-Ul, S. Kanaya, A. Shilatifard, E. O'Shea, J. S. Weissman, C. J. Ingles, T. R. Hughes, J. Parkinson, M. Gerstein, S. J.Wodak, A. Emili, J. F. Greenblatt, Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440, 637-643 (2006).
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
Punna, T.11
Peregrín-Alvarez, J.M.12
Shales, M.13
Zhang, X.14
Davey, M.15
Robinson, M.D.16
Paccanaro, A.17
Bray, J.E.18
Sheung, A.19
Beattie, B.20
Richards, D.P.21
Canadien, V.22
Lalev, A.23
Mena, F.24
Wong, P.25
Starostine, A.26
Canete, M.M.27
Vlasblom, J.28
Wu, S.29
Orsi, C.30
Collins, S.R.31
Chandran, S.32
Haw, R.33
Rilstone, J.J.34
Gandi, K.35
Thompson, N.J.36
Musso, G.37
St Onge, P.38
Ghanny, S.39
Lam, M.H.40
Butland, G.41
Altaf-Ul, A.M.42
Kanaya, S.43
Shilatifard, A.44
O'Shea, E.45
Weissman, J.S.46
Ingles, C.J.47
Hughes, T.R.48
Parkinson, J.49
Gerstein, M.50
Wodak, S.J.51
Emili, A.52
Greenblatt, J.F.53
more..
-
45
-
-
33947095027
-
A human phenome-interactome network of protein complexes implicated in genetic disorders
-
DOI 10.1038/nbt1295, PII NBT1295
-
K. Lage, E. O. Karlberg, Z. M. Størling, P. I. Olason, A. G. Pedersen, O. Rigina, A. M. Hinsby, Z. Tümer, F. Pociot, N. Tommerup, Y. Moreau, S. Brunak, A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat. Biotechnol. 25, 309-316 (2007). (Pubitemid 46402863)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.3
, pp. 309-316
-
-
Lage, K.1
Karlberg, E.O.2
Storling, Z.M.3
Olason, P.I.4
Pedersen, A.G.5
Rigina, O.6
Hinsby, A.M.7
Tumer, Z.8
Pociot, F.9
Tommerup, N.10
Moreau, Y.11
Brunak, S.12
-
46
-
-
78651280402
-
COXPRESdb: A database to compare gene coexpression in seven model animals
-
T. Obayashi, K. Kinoshita, COXPRESdb: A database to compare gene coexpression in seven model animals. Nucleic Acids Res. 39, D1016-D1022 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Obayashi, T.1
Kinoshita, K.2
-
47
-
-
0027160708
-
Targeted gene expression as a means of altering cell fates and generating dominant phenotypes
-
A. H. Brand, N. Perrimon, Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118, 401-415 (1993). (Pubitemid 23214028)
-
(1993)
Development
, vol.118
, Issue.2
, pp. 401-415
-
-
Brand, A.H.1
Perrimon, N.2
-
48
-
-
33751313078
-
Selected methods for the anatomical study of drosophila embryonic and larval neuromuscular junctions
-
DOI 10.1016/S0074-7742(06)75015-2, PII S0074774206750152, The Fly Neuromuscular Junction: Structure and Function Second Edition
-
V. Budnik, M. Gorczyca, A. Prokop, Selected methods for the anatomical study of Drosophila embryonic and larval neuromuscular junctions. Int. Rev. Neurobiol. 75, 323-365 (2006). (Pubitemid 44809149)
-
(2006)
International Review of Neurobiology
, vol.75
, pp. 323-365
-
-
Budnik, V.1
Gorczyca, M.2
Prokop, A.3
-
49
-
-
14744297005
-
Myc-dependent regulation of ribosomal RNA synthesis during Drosophila development
-
DOI 10.1038/ncb1223
-
S. S. Grewal, L. Li, A. Orian, R. N. Eisenman, B. A. Edgar, Myc-dependent regulation of ribosomal RNA synthesis during Drosophila development. Nat. Cell Biol. 7, 295-302 (2005). (Pubitemid 40331131)
-
(2005)
Nature Cell Biology
, vol.7
, Issue.3
, pp. 295-302
-
-
Grewal, S.S.1
Li, L.2
Orian, A.3
Eisenman, R.N.4
Edgar, B.A.5
-
50
-
-
0343091991
-
The Drosophila Brahma complex is an essential coactivator for the trithorax group protein Zeste
-
A. J. Kal, T. Mahmoudi, N. B. Zak, C. P. Verrijzer, The Drosophila Brahma complex is an essential coactivator for the trithorax group protein zeste. Genes Dev. 14, 1058-1071 (2000). (Pubitemid 30324420)
-
(2000)
Genes and Development
, vol.14
, Issue.9
, pp. 1058-1071
-
-
Arnoud J, K.1
Mahmoudi, T.2
Zak, N.B.3
Verrijzer, C.P.4
-
51
-
-
0031736990
-
The Drosophila trithorax group proteins BRM, ASH1 and ASH2 are subunits of distinct protein complexes
-
O. Papoulas, S. J. Beek, S. L. Moseley, C. M. McCallum, M. Sarte, A. Shearn, J. W. Tamkun, The Drosophila trithorax group proteins BRM, ASH1 and ASH2 are subunits of distinct protein complexes. Development 125, 3955-3966 (1998). (Pubitemid 28515434)
-
(1998)
Development
, vol.125
, Issue.20
, pp. 3955-3966
-
-
Papoulas, O.1
Beek, S.J.2
Moseley, S.L.3
McCallum, C.M.4
Sarte, M.5
Shearn, A.6
Tamkun, J.W.7
-
52
-
-
78651275182
-
Reactome: A database of reactions, pathways and biological processes
-
D. Croft, G. O'Kelly, G. Wu, R. Haw, M. Gillespie, L. Matthews, M. Caudy, P. Garapati, G. Gopinath, B. Jassal, S. Jupe, I. Kalatskaya, S. Mahajan, B. May, N. Ndegwa, E. Schmidt, V. Shamovsky, C. Yung, E. Birney, H. Hermjakob, P. D'Eustachio, L. Stein, Reactome: A database of reactions, pathways and biological processes. Nucleic Acids Res. 39, D691-D697 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Croft, D.1
O'Kelly, G.2
Wu, G.3
Haw, R.4
Gillespie, M.5
Matthews, L.6
Caudy, M.7
Garapati, P.8
Gopinath, G.9
Jassal, B.10
Jupe, S.11
Kalatskaya, I.12
Mahajan, S.13
May, B.14
Ndegwa, N.15
Schmidt, E.16
Shamovsky, V.17
Yung, C.18
Birney, E.19
Hermjakob, H.20
D'Eustachio, P.21
Stein, L.22
more..
-
53
-
-
84859204939
-
The IntAct molecular interaction database in 2012
-
S. Kerrien, B. Aranda, L. Breuza, A. Bridge, F. Broackes-Carter, C. Chen, M. Duesbury, M. Dumousseau, M. Feuermann, U. Hinz, C. Jandrasits, R. C. Jimenez, J. Khadake, U. Mahadevan, P. Masson, I. Pedruzzi, E. Pfeiffenberger, P. Porras, A. Raghunath, B. Roechert, S. Orchard, H. Hermjakob, The IntAct molecular interaction database in 2012. Nucleic Acids Res. 40, D841-D846 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Kerrien, S.1
Aranda, B.2
Breuza, L.3
Bridge, A.4
Broackes-Carter, F.5
Chen, C.6
Duesbury, M.7
Dumousseau, M.8
Feuermann, M.9
Hinz, U.10
Jandrasits, C.11
Jimenez, R.C.12
Khadake, J.13
Mahadevan, U.14
Masson, P.15
Pedruzzi, I.16
Pfeiffenberger, E.17
Porras, P.18
Raghunath, A.19
Roechert, B.20
Orchard, S.21
Hermjakob, H.22
more..
-
54
-
-
0347755535
-
The Database of Interacting Proteins: 2004 update
-
L. Salwinski, C. S. Miller, A. J. Smith, F. K. Pettit, J. U. Bowie, D. Eisenberg, The Database of Interacting Proteins: 2004 update. Nucleic Acids Res. 32, D449-D451 (2004). (Pubitemid 38081696)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISSUE
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
55
-
-
84860918589
-
MINT, the molecular interaction database: 2012 update
-
L. Licata, L. Briganti, D. Peluso, L. Perfetto, M. Iannuccelli, E. Galeota, F. Sacco, A. Palma, A. P. Nardozza, E. Santonico, L. Castagnoli, G. Cesareni, MINT, the molecular interaction database: 2012 update. Nucleic Acids Res. 40, D857-D861 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Licata, L.1
Briganti, L.2
Peluso, D.3
Perfetto, L.4
Iannuccelli, M.5
Galeota, E.6
Sacco, F.7
Palma, A.8
Nardozza, A.P.9
Santonico, E.10
Castagnoli, L.11
Cesareni, G.12
-
56
-
-
84859011467
-
Hyperplexing: A method for higher-order multiplexed quantitative proteomics provides a map of the dynamic response to rapamycin in yeast
-
N. Dephoure, S. P. Gygi, Hyperplexing: A method for higher-order multiplexed quantitative proteomics provides a map of the dynamic response to rapamycin in yeast. Sci. Signal. 5, rs2 (2012).
-
(2012)
Sci. Signal.
, vol.5
-
-
Dephoure, N.1
Gygi, S.P.2
-
57
-
-
84984933087
-
The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
-
J. Villén, S. P. Gygi, The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry. Nat. Protoc. 3, 1630-1638 (2008).
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1630-1638
-
-
Villén, J.1
Gygi, S.P.2
-
58
-
-
78650466243
-
A tissue-specific atlas of mouse protein phosphorylation and expression
-
E. L. Huttlin, M. P. Jedrychowski, J. E. Elias, T. Goswami, R. Rad, S. A. Beausoleil, J. Villén, W. Haas, M. E. Sowa, S. P. Gygi, A tissue-specific atlas of mouse protein phosphorylation and expression. Cell 143, 1174-1189 (2010).
-
(2010)
Cell
, vol.143
, pp. 1174-1189
-
-
Huttlin, E.L.1
Jedrychowski, M.P.2
Elias, J.E.3
Goswami, T.4
Rad, R.5
Beausoleil, S.A.6
Villén, J.7
Haas, W.8
Sowa, M.E.9
Gygi, S.P.10
|