메뉴 건너뛰기




Volumn 8, Issue 3, 2013, Pages

Networks in a Large-Scale Phylogenetic Analysis: Reconstructing Evolutionary History of Asparagales (Lilianae) Based on Four Plastid Genes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASPARAGALES; ATPB GENE; CLADISTICS; EVOLUTION; MATK GENE; MOLECULAR CLOCK; NDHF GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PLANT GENE; PLASTID; RBCL GENE; UNINDEXED SEQUENCE;

EID: 84875072712     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0059472     Document Type: Article
Times cited : (67)

References (91)
  • 2
    • 0031430556 scopus 로고    scopus 로고
    • Population thinking and tree thinking in systematics
    • O'Hara RJ, (1997) Population thinking and tree thinking in systematics. Zoologica Scripta 26: 323-329.
    • (1997) Zoologica Scripta , vol.26 , pp. 323-329
    • O'Hara, R.J.1
  • 4
    • 0030902563 scopus 로고    scopus 로고
    • Phylogenetic methods come of age: Testing hypotheses in an evolutionary context
    • Huelsenbeck JP, Rannala B, (1997) Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276: 227-232.
    • (1997) Science , vol.276 , pp. 227-232
    • Huelsenbeck, J.P.1    Rannala, B.2
  • 5
    • 0242353788 scopus 로고    scopus 로고
    • Sunderland, Massachusetts: Sinauer Associates
    • Felsenstein J (2004) Inferring phytogenies. Sunderland, Massachusetts: Sinauer Associates.
    • (2004) Inferring phytogenies
    • Felsenstein, J.1
  • 6
    • 77951586581 scopus 로고    scopus 로고
    • Using Data-Display Networks for Exploratory Data Analysis in Phylogenetic Studies
    • Morrison DA, (2010) Using Data-Display Networks for Exploratory Data Analysis in Phylogenetic Studies. Molecular Biology and Evolution 27: 1044-1057.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 1044-1057
    • Morrison, D.A.1
  • 7
    • 77951579970 scopus 로고    scopus 로고
    • Evolutionary phylogenetic networks: models and issues
    • Heath L, Ramakrishnan N, editors. New York, USA: Springer, New York Inc
    • Nakhleh L (2010) Evolutionary phylogenetic networks: models and issues. Problem Solving Handbook in Computational Biology and Bioinformatics.; Heath L, Ramakrishnan N, editors. New York, USA: Springer, New York Inc. 125-158 p.
    • (2010) Problem Solving Handbook in Computational Biology and Bioinformatics , pp. 125-158
    • Nakhleh, L.1
  • 9
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-Net: An agglomerative method for the construction of phylogenetic networks
    • Bryant D, Moulton V, (2004) Neighbor-Net: An agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution 21: 255-265.
    • (2004) Molecular Biology and Evolution , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 10
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 11
    • 0000055645 scopus 로고
    • Molecular phylogenetic of Lilianae
    • In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors, Richmond: Royal Botanic Gardens, Kew
    • Chase MW, Duvall MR, Hills HG, Conran JG, Cox AV, et al. (1995) Molecular phylogenetic of Lilianae. In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors. Monocotyledons: systematics and evolution: Richmond: Royal Botanic Gardens, Kew. 109-137.
    • (1995) Monocotyledons: Systematics and evolution , pp. 109-137
    • Chase, M.W.1    Duvall, M.R.2    Hills, H.G.3    Conran, J.G.4    Cox, A.V.5
  • 12
    • 0000590850 scopus 로고
    • Monocots systematics: a combined analysis
    • In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors, Royal Botanic Gardens, Kew: Richmond
    • Chase MW, Stevenson DW, Wilkin P, Rudall PJ (1995) Monocots systematics: a combined analysis. In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors. Monocotyledons: systematics and evolution. Royal Botanic Gardens, Kew: Richmond. 685-730.
    • (1995) Monocotyledons: Systematics and evolution , pp. 685-730
    • Chase, M.W.1    Stevenson, D.W.2    Wilkin, P.3    Rudall, P.J.4
  • 13
    • 0001472866 scopus 로고    scopus 로고
    • Higher-level systematics of the monocotyledons: an assessment of current knowledge and a new classification
    • In: Wilson KL, Morrison DA, editors, Melbourne, Australia: CSIRO
    • Chase MW, Soltis DE, Soltis PS, Rudall PJ, Fay MF, et al. (2000) Higher-level systematics of the monocotyledons: an assessment of current knowledge and a new classification. In: Wilson KL, Morrison DA, editors. Monocots: Systematics and evolution. Melbourne, Australia: CSIRO. 3-16.
    • (2000) Monocots: Systematics and evolution , pp. 3-16
    • Chase, M.W.1    Soltis, D.E.2    Soltis, P.S.3    Rudall, P.J.4    Fay, M.F.5
  • 14
    • 0033768330 scopus 로고    scopus 로고
    • Phylogenetics of Asphodelaceae (Asparagales): An analysis of plastid rbcL and trnL-F DNA sequences
    • Chase MW, De Bruijn AY, Cox AV, Reeves C, Rudall PJ, et al. (2000) Phylogenetics of Asphodelaceae (Asparagales): An analysis of plastid rbcL and trnL-F DNA sequences. Annals of Botany 86: 935-951.
    • (2000) Annals of Botany , vol.86 , pp. 935-951
    • Chase, M.W.1    De Bruijn, A.Y.2    Cox, A.V.3    Reeves, C.4    Rudall, P.J.5
  • 15
    • 33744494694 scopus 로고    scopus 로고
    • Multigene analyses of monocot relationships:A summary
    • Chase MW, Fay MF, Devey DS, Maurin O, Ronsted N, et al. (2006) Multigene analyses of monocot relationships:A summary. Aliso 22: 63-75.
    • (2006) Aliso , vol.22 , pp. 63-75
    • Chase, M.W.1    Fay, M.F.2    Devey, D.S.3    Maurin, O.4    Ronsted, N.5
  • 16
    • 70350242927 scopus 로고    scopus 로고
    • A phylogenetic classification of the land plants to accompany APG III
    • Chase MW, Reveal JL, (2009) A phylogenetic classification of the land plants to accompany APG III. Botanical Journal of the Linnean Society 161: 122-127.
    • (2009) Botanical Journal of the Linnean Society , vol.161 , pp. 122-127
    • Chase, M.W.1    Reveal, J.L.2
  • 18
    • 0032442799 scopus 로고    scopus 로고
    • An ordinal classification for the families of flowering plants
    • APG
    • APG (1998) An ordinal classification for the families of flowering plants. Annals of the Missouri Botanical Garden 85: 531-553.
    • (1998) Annals of the Missouri Botanical Garden , vol.85 , pp. 531-553
  • 20
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
    • APG III
    • APG III, (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161: 105-121.
    • (2009) Botanical Journal of the Linnean Society , vol.161 , pp. 105-121
  • 21
    • 70350220743 scopus 로고    scopus 로고
    • A subfamilial classification for the expanded asparagalean families Amaryllidaceae, Asparagaceae and Xanthorrhoeaceae
    • Chase MW, Reveal JL, Fay MF, (2009) A subfamilial classification for the expanded asparagalean families Amaryllidaceae, Asparagaceae and Xanthorrhoeaceae. Botanical Journal of the Linnean Society 161: 132-136.
    • (2009) Botanical Journal of the Linnean Society , vol.161 , pp. 132-136
    • Chase, M.W.1    Reveal, J.L.2    Fay, M.F.3
  • 22
    • 0002462538 scopus 로고    scopus 로고
    • Phylogenetic studies of Asparagales based on four plastid DNA regions
    • In: Wilson KL, Morrison DA, editors, Melbourne: CSIRO
    • Fay M, Rudall PJ, Sullivan S, Stobart KL, De Bruijn A, et al. (2000) Phylogenetic studies of Asparagales based on four plastid DNA regions. In: Wilson KL, Morrison DA, editors. Monocots: systematics and evolution. Melbourne: CSIRO. 360-371.
    • (2000) Monocots: Systematics and evolution , pp. 360-371
    • Fay, M.1    Rudall, P.J.2    Sullivan, S.3    Stobart, K.L.4    De Bruijn, A.5
  • 23
    • 38949143348 scopus 로고    scopus 로고
    • Robust inference of monocot deep phylogeny using an expanded multigene plastid data set
    • Graham SW, Zgurski JM, McPherson MA, Cherniawsky DM, Saarela JM, et al. (2006) Robust inference of monocot deep phylogeny using an expanded multigene plastid data set. Aliso 22: 3-21.
    • (2006) Aliso , vol.22 , pp. 3-21
    • Graham, S.W.1    Zgurski, J.M.2    McPherson, M.A.3    Cherniawsky, D.M.4    Saarela, J.M.5
  • 24
    • 0036176539 scopus 로고    scopus 로고
    • Homologies of inferior ovaries and septal nectaries in monocotyledons
    • Rudall P, (2002) Homologies of inferior ovaries and septal nectaries in monocotyledons. International Journal of Plant Sciences 163: 261-276.
    • (2002) International Journal of Plant Sciences , vol.163 , pp. 261-276
    • Rudall, P.1
  • 26
    • 78049266371 scopus 로고    scopus 로고
    • Molecular phylogenetics of Ruscaceae sensu lato and related families (Asparagales) based on plastid and nuclear DNA sequences
    • Kim JH, Kim DK, Forest F, Fay MF, Chase MW, (2010) Molecular phylogenetics of Ruscaceae sensu lato and related families (Asparagales) based on plastid and nuclear DNA sequences. Annals of Botany 106: 775-790.
    • (2010) Annals of Botany , vol.106 , pp. 775-790
    • Kim, J.H.1    Kim, D.K.2    Forest, F.3    Fay, M.F.4    Chase, M.W.5
  • 27
    • 84862699910 scopus 로고    scopus 로고
    • The phylogenetic relationships of Asparagales in Korea based on five plastid DNA regions
    • Kim DK, Kim JS, Kim JH, (2012) The phylogenetic relationships of Asparagales in Korea based on five plastid DNA regions. Journal of Plant Biology 55: 325-341.
    • (2012) Journal of Plant Biology , vol.55 , pp. 325-341
    • Kim, D.K.1    Kim, J.S.2    Kim, J.H.3
  • 31
    • 11144300927 scopus 로고    scopus 로고
    • The age of major monocot groups inferred from 800+rbcL sequences
    • Janssen T, Bremer K, (2004) The age of major monocot groups inferred from 800+rbcL sequences. Botanical Journal of the Linnean Society 146: 385-398.
    • (2004) Botanical Journal of the Linnean Society , vol.146 , pp. 385-398
    • Janssen, T.1    Bremer, K.2
  • 32
    • 34247132504 scopus 로고    scopus 로고
    • The higher-level phylogeny of monocots based on matK, rbcL and 18S rDNA sequences
    • Li XX, Zhou ZK, (2007) The higher-level phylogeny of monocots based on matK, rbcL and 18S rDNA sequences. Acta Phytotaxonomica Sinica 45: 113-133.
    • (2007) Acta Phytotaxonomica Sinica , vol.45 , pp. 113-133
    • Li, X.X.1    Zhou, Z.K.2
  • 36
    • 77955991477 scopus 로고    scopus 로고
    • The Age and Diversification of the Angiosperms Re-Revisited
    • Bell CD, Soltis DE, Soltis PS, (2010) The Age and Diversification of the Angiosperms Re-Revisited. American Journal of Botany 97: 1296-1303.
    • (2010) American Journal of Botany , vol.97 , pp. 1296-1303
    • Bell, C.D.1    Soltis, D.E.2    Soltis, P.S.3
  • 38
    • 44949251634 scopus 로고    scopus 로고
    • Conflict amongst chloroplast DNA sequences obscures the phylogeny of a group of Asplenium ferns
    • Shepherd LD, Holland BR, Perrie LR, (2008) Conflict amongst chloroplast DNA sequences obscures the phylogeny of a group of Asplenium ferns. Molecular Phylogenetics and Evolution 48: 176-187.
    • (2008) Molecular Phylogenetics and Evolution , vol.48 , pp. 176-187
    • Shepherd, L.D.1    Holland, B.R.2    Perrie, L.R.3
  • 39
    • 77954544485 scopus 로고    scopus 로고
    • A molecular phylogeny, morphology and classification of genera of Ranunculeae (Ranunculaceae)
    • Emadzade K, Lehnebach C, Lockhart P, Horandl E, (2010) A molecular phylogeny, morphology and classification of genera of Ranunculeae (Ranunculaceae). Taxon 59: 809-828.
    • (2010) Taxon , vol.59 , pp. 809-828
    • Emadzade, K.1    Lehnebach, C.2    Lockhart, P.3    Horandl, E.4
  • 40
    • 70449708285 scopus 로고    scopus 로고
    • A Nuclear Ribosomal DNA Phylogeny of Acer Inferred with Maximum Likelihood, Splits Graphs, and Motif Analysis of 606 Sequences
    • Grimm GW, Renner SS, Stamatakis A, Hemleben V, (2006) A Nuclear Ribosomal DNA Phylogeny of Acer Inferred with Maximum Likelihood, Splits Graphs, and Motif Analysis of 606 Sequences. Evolutionary Bioinformatics 2: 7-22.
    • (2006) Evolutionary Bioinformatics , vol.2 , pp. 7-22
    • Grimm, G.W.1    Renner, S.S.2    Stamatakis, A.3    Hemleben, V.4
  • 41
    • 28944434614 scopus 로고    scopus 로고
    • Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales
    • Fitzpatrick DA, Creevey CJ, McInerney JO, (2006) Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Molecular Biology and Evolution 23: 74-85.
    • (2006) Molecular Biology and Evolution , vol.23 , pp. 74-85
    • Fitzpatrick, D.A.1    Creevey, C.J.2    McInerney, J.O.3
  • 42
    • 33750265138 scopus 로고    scopus 로고
    • Horizontal gene transfer in aminoacyl-tRNA synthetases including leucine-specific subtypes
    • Dohm JC, Vingron M, Staub E, (2006) Horizontal gene transfer in aminoacyl-tRNA synthetases including leucine-specific subtypes. Journal of Molecular Evolution 63: 437-447.
    • (2006) Journal of Molecular Evolution , vol.63 , pp. 437-447
    • Dohm, J.C.1    Vingron, M.2    Staub, E.3
  • 44
    • 34247874564 scopus 로고    scopus 로고
    • Genome survey sequencing of the wine spoilage yeast Dekkera (Brettanomyces) bruxellensis
    • Woolfit M, Rozpedowska E, Piskur J, Wolfe KH, (2007) Genome survey sequencing of the wine spoilage yeast Dekkera (Brettanomyces) bruxellensis. Eukaryotic Cell 6: 721-733.
    • (2007) Eukaryotic Cell , vol.6 , pp. 721-733
    • Woolfit, M.1    Rozpedowska, E.2    Piskur, J.3    Wolfe, K.H.4
  • 45
    • 84858591050 scopus 로고    scopus 로고
    • Quality and Quantity of Data Recovered from Massively Parallel Sequencing: Examples in Asparagales and Poaceae
    • Steele PR, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, et al. (2012) Quality and Quantity of Data Recovered from Massively Parallel Sequencing: Examples in Asparagales and Poaceae. American Journal of Botany 99: 330-348.
    • (2012) American Journal of Botany , vol.99 , pp. 330-348
    • Steele, P.R.1    Hertweck, K.L.2    Mayfield, D.3    McKain, M.R.4    Leebens-Mack, J.5
  • 47
    • 0037370533 scopus 로고    scopus 로고
    • Probabilistic analysis indicates discordant gene trees in chloroplast evolution
    • Vogl C, Badger J, Kearney P, Li M, Clegg M, et al. (2003) Probabilistic analysis indicates discordant gene trees in chloroplast evolution. Journal of Molecular Evolution 56: 330-340.
    • (2003) Journal of Molecular Evolution , vol.56 , pp. 330-340
    • Vogl, C.1    Badger, J.2    Kearney, P.3    Li, M.4    Clegg, M.5
  • 49
    • 8844267682 scopus 로고    scopus 로고
    • Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: Implications for plant molecular systematics
    • Wolfe AD, Randle CP, (2004) Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: Implications for plant molecular systematics. Systematic Botany 29: 1011-1020.
    • (2004) Systematic Botany , vol.29 , pp. 1011-1020
    • Wolfe, A.D.1    Randle, C.P.2
  • 51
    • 35448965597 scopus 로고    scopus 로고
    • Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects
    • Wagele JW, Mayer C, (2007) Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects. Bmc Evolutionary Biology 7: 1471-2148.
    • (2007) Bmc Evolutionary Biology , vol.7 , pp. 1471-2148
    • Wagele, J.W.1    Mayer, C.2
  • 53
    • 0032023889 scopus 로고    scopus 로고
    • Taxonomic sampling, phylogenetic accuracy, and investigator bias
    • Hillis DM, (1998) Taxonomic sampling, phylogenetic accuracy, and investigator bias. Systematic Biology 47: 3-8.
    • (1998) Systematic Biology , vol.47 , pp. 3-8
    • Hillis, D.M.1
  • 55
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl DJ, Hillis DM, (2002) Increased taxon sampling greatly reduces phylogenetic error. Systematic Biology 51: 588-598.
    • (2002) Systematic Biology , vol.51 , pp. 588-598
    • Zwickl, D.J.1    Hillis, D.M.2
  • 56
    • 0000002524 scopus 로고
    • Cladistic analysis of monocot families
    • In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors, Royal Botanic Garden, Kew
    • Stevenson DW, Loconte H (1995) Cladistic analysis of monocot families. In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors. Monocotyledons: systematics and evolution. Royal Botanic Garden, Kew. 543-578.
    • (1995) Monocotyledons: Systematics and evolution , pp. 543-578
    • Stevenson, D.W.1    Loconte, H.2
  • 58
    • 79956361337 scopus 로고    scopus 로고
    • Molecular phylogenetics of Hypoxidaceae - Evidence from plastid DNA data and inferences on morphology and biogeography
    • Kocyan A, Snijman DA, Forest F, Devey DS, Freudenstein JV, et al. (2011) Molecular phylogenetics of Hypoxidaceae- Evidence from plastid DNA data and inferences on morphology and biogeography. Molecular Phylogenetics and Evolution 60: 122-136.
    • (2011) Molecular Phylogenetics and Evolution , vol.60 , pp. 122-136
    • Kocyan, A.1    Snijman, D.A.2    Forest, F.3    Devey, D.S.4    Freudenstein, J.V.5
  • 59
    • 70350103638 scopus 로고    scopus 로고
    • Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times
    • Ho SYW, Phillips MJ, (2009) Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times. Systematic Biology 58: 367-380.
    • (2009) Systematic Biology , vol.58 , pp. 367-380
    • Ho, S.Y.W.1    Phillips, M.J.2
  • 61
    • 34548349201 scopus 로고    scopus 로고
    • Dating the origin of the Orchidaceae from a fossil orchid with its pollinator
    • Ramirez SR, Gravendeel B, Singer RB, Marshall CR, Pierce NE, (2007) Dating the origin of the Orchidaceae from a fossil orchid with its pollinator. Nature 448: 1042-1045.
    • (2007) Nature , vol.448 , pp. 1042-1045
    • Ramirez, S.R.1    Gravendeel, B.2    Singer, R.B.3    Marshall, C.R.4    Pierce, N.E.5
  • 63
    • 60249100736 scopus 로고    scopus 로고
    • Earliest Orchid Macrofossils: Early Miocene Dendrobium and Earina (Orchidaceae: Epidendroideae) from New Zealand
    • Conran JG, Bannister JM, Lee DE, (2009) Earliest Orchid Macrofossils: Early Miocene Dendrobium and Earina (Orchidaceae: Epidendroideae) from New Zealand. American Journal of Botany 96: 466-474.
    • (2009) American Journal of Botany , vol.96 , pp. 466-474
    • Conran, J.G.1    Bannister, J.M.2    Lee, D.E.3
  • 64
    • 77953346846 scopus 로고    scopus 로고
    • Reassessing the temporal evolution of orchids with new fossils and a Bayesian relaxed clock, with implications for the diversification of the rare South American genus Hoffmannseggella (Orchidaceae: Epidendroideae)
    • Gustafsson ALS, Verola CF, Antonelli A, (2010) Reassessing the temporal evolution of orchids with new fossils and a Bayesian relaxed clock, with implications for the diversification of the rare South American genus Hoffmannseggella (Orchidaceae: Epidendroideae). Bmc Evolutionary Biology 10: 1471-2148.
    • (2010) Bmc Evolutionary Biology , vol.10 , pp. 1471-2148
    • Gustafsson, A.L.S.1    Verola, C.F.2    Antonelli, A.3
  • 65
    • 51549120141 scopus 로고    scopus 로고
    • Iridaceae 'out of Australasia'? Phylogeny, biogeography, and divergence time based on plastid DNA sequences
    • Goldblatt P, Rodriguez A, Powell MP, Davies TJ, Manning JC, et al. (2008) Iridaceae 'out of Australasia'? Phylogeny, biogeography, and divergence time based on plastid DNA sequences. Systematic Botany 33: 495-508.
    • (2008) Systematic Botany , vol.33 , pp. 495-508
    • Goldblatt, P.1    Rodriguez, A.2    Powell, M.P.3    Davies, T.J.4    Manning, J.C.5
  • 66
    • 0002211918 scopus 로고
    • The fossil history of the monocotyledons
    • In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors, Kew: Royal Botanic Gardens
    • Herendeen PS, Crane PR (1995) the fossil history of the monocotyledons. In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors. Monocotyledons: systematics and evolution. Kew: Royal Botanic Gardens. 1-21.
    • (1995) Monocotyledons: Systematics and evolution , pp. 1-21
    • Herendeen, P.S.1    Crane, P.R.2
  • 67
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL, (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical bulletin 19: 11-15.
    • (1987) Phytochemical Bulletin , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 69
    • 0000348343 scopus 로고
    • A comparison of angiosperm phylogenies from nuclear 18S rDNA and rbcL sequences
    • Nickrent DL, Soltis DE, (1995) A comparison of angiosperm phylogenies from nuclear 18S rDNA and rbcL sequences. Annals of the Missouri Botanical Garden 82: 208-234.
    • (1995) Annals of the Missouri Botanical Garden , vol.82 , pp. 208-234
    • Nickrent, D.L.1    Soltis, D.E.2
  • 70
    • 0002687565 scopus 로고    scopus 로고
    • Molecular evolution of 18S rDNA in angiosperms: implications for character weighting in phylogenetic analysis
    • Soltis PS, Soltis DE, (1998) Molecular evolution of 18S rDNA in angiosperms: implications for character weighting in phylogenetic analysis. Molecular systematics of plants 2: 188-210.
    • (1998) Molecular Systematics of Plants , vol.2 , pp. 188-210
    • Soltis, P.S.1    Soltis, D.E.2
  • 71
    • 0000890115 scopus 로고
    • Phylogenetic Inference in Saxifragaceae Sensu-Stricto and Gilia (Polemoniaceae) Using Matk Sequences
    • Johnson LA, Soltis DE, (1995) Phylogenetic Inference in Saxifragaceae Sensu-Stricto and Gilia (Polemoniaceae) Using Matk Sequences. Annals of the Missouri Botanical Garden 82: 149-175.
    • (1995) Annals of the Missouri Botanical Garden , vol.82 , pp. 149-175
    • Johnson, L.A.1    Soltis, D.E.2
  • 72
    • 0030733470 scopus 로고    scopus 로고
    • Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) using ndhF sequences
    • Terry RG, Brown GK, Olmstead RG, (1997) Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) using ndhF sequences. Systematic Botany 22: 333-345.
    • (1997) Systematic Botany , vol.22 , pp. 333-345
    • Terry, R.G.1    Brown, G.K.2    Olmstead, R.G.3
  • 73
    • 0028255725 scopus 로고
    • Combining Data in Phylogenetic Systematics - an Empirical-Approach Using 3 Molecular-Data Sets in the Solanaceae
    • Olmstead RG, Sweere JA, (1994) Combining Data in Phylogenetic Systematics- an Empirical-Approach Using 3 Molecular-Data Sets in the Solanaceae. Systematic Biology 43: 467-481.
    • (1994) Systematic Biology , vol.43 , pp. 467-481
    • Olmstead, R.G.1    Sweere, J.A.2
  • 75
    • 0028189865 scopus 로고
    • Phylogenetic relationships among genera in theLiliaceae-Asparagoideae-Polygonatae sl inferred fromrbcL gene sequence data
    • Shinwari ZK, Kato H, Terauchi R, Kawano S, (1994) Phylogenetic relationships among genera in theLiliaceae-Asparagoideae-Polygonatae sl inferred fromrbcL gene sequence data. Plant Systematics and Evolution 192: 263-277.
    • (1994) Plant Systematics and Evolution , vol.192 , pp. 263-277
    • Shinwari, Z.K.1    Kato, H.2    Terauchi, R.3    Kawano, S.4
  • 76
    • 0029759847 scopus 로고    scopus 로고
    • Resurrection of Themidaceae for the Brodiaea alliance, and recircumscription of Alliaceae, Amaryllidaceae and Agapanthoideae
    • Fay MF, Chase MW, (1996) Resurrection of Themidaceae for the Brodiaea alliance, and recircumscription of Alliaceae, Amaryllidaceae and Agapanthoideae. Taxon 45: 441-451.
    • (1996) Taxon , vol.45 , pp. 441-451
    • Fay, M.F.1    Chase, M.W.2
  • 77
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 79
    • 0034491886 scopus 로고    scopus 로고
    • The evolution of non-coding chloroplast DNA and its application in plant systematics
    • Kelchner SA, (2000) The evolution of non-coding chloroplast DNA and its application in plant systematics. Annals of the Missouri Botanical Garden 87: 482-498.
    • (2000) Annals of the Missouri Botanical Garden , vol.87 , pp. 482-498
    • Kelchner, S.A.1
  • 80
    • 34047267637 scopus 로고
    • A canonical decomposition theory for metrics on a finite set
    • Bandelt HJ, Dress AWM, (1992) A canonical decomposition theory for metrics on a finite set. Advances in mathematics 92: 47-105.
    • (1992) Advances in Mathematics , vol.92 , pp. 47-105
    • Bandelt, H.J.1    Dress, A.W.M.2
  • 81
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D, (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23: 254-267.
    • (2006) Molecular Biology and Evolution , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 82
    • 0003474197 scopus 로고    scopus 로고
    • ver. 4.10b. Sunderland, MA: Sinauer Associates.: Sinauer Associates, Sunderland, Massachusetts
    • Swofford DL (2007) PAUP*: phylogenetic analysis using parsimony, ver. 4.10b. Sunderland, MA: Sinauer Associates.: Sinauer Associates, Sunderland, Massachusetts.
    • (2007) PAUP*: Phylogenetic analysis using parsimony
    • Swofford, D.L.1
  • 83
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: minimum change for a specific tree topology
    • Fitch WM, (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Biology 20: 406-416.
    • (1971) Systematic Biology , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 84
    • 84983540175 scopus 로고
    • The retention index and the rescaled consistency index
    • Farris JS, (1989) The retention index and the rescaled consistency index. Cladistics 5: 417-419.
    • (1989) Cladistics , vol.5 , pp. 417-419
    • Farris, J.S.1
  • 85
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution: 783-791.
    • (1985) Evolution , pp. 783-791
    • Felsenstein, J.1
  • 86
    • 26244453330 scopus 로고    scopus 로고
    • Available
    • Ronquist F, Huelsenbeck JP, van der Mark P (2005) MrBayes 3.1 Manual. Available: http://www.cse.unsw.edu.au/~binftools/birch/birchhomedir/dat/GDE/GDEHELP-solaris-amd64/dat/dGDE/GDEHELP-osx-x86_64/doc/mrbayes/mb3.1_manual.pdf. Accessed 2012 April 24.
    • (2005) MrBayes 3.1 Manual
    • Ronquist, F.1    Huelsenbeck, J.P.2    van der Mark, P.3
  • 87
    • 20444386770 scopus 로고    scopus 로고
    • v2 Evolutionary Biology Centre, Uppsala University. Program distributed by the author
    • Nylander J (2004) MrModeltest v2 Evolutionary Biology Centre, Uppsala University. Program distributed by the author.
    • (2004) MrModeltest
    • Nylander, J.1
  • 88
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. Bmc Evolutionary Biology 7: 214.
    • (2007) Bmc Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 90
    • 0002749145 scopus 로고
    • Spirematospermum chandlerae sp. Nov., an extinct species of Zingiberaceae from the North American Cretaceous
    • Friis EM, (1988) Spirematospermum chandlerae sp. Nov., an extinct species of Zingiberaceae from the North American Cretaceous. Tertiary Research 9: 7-12.
    • (1988) Tertiary Research , vol.9 , pp. 7-12
    • Friis, E.M.1
  • 91
    • 50849124850 scopus 로고    scopus 로고
    • v1.4. Available
    • Rambaut A, Drummond AJ (2007) BEAST website, Tracer v1.4. Available: http://beast.bio.ed.ac.uk/Tracer. Accessed 2012 July 8.
    • (2007) Tracer
    • Rambaut, A.1    Drummond, A.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.