-
2
-
-
0031430556
-
Population thinking and tree thinking in systematics
-
O'Hara RJ, (1997) Population thinking and tree thinking in systematics. Zoologica Scripta 26: 323-329.
-
(1997)
Zoologica Scripta
, vol.26
, pp. 323-329
-
-
O'Hara, R.J.1
-
4
-
-
0030902563
-
Phylogenetic methods come of age: Testing hypotheses in an evolutionary context
-
Huelsenbeck JP, Rannala B, (1997) Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276: 227-232.
-
(1997)
Science
, vol.276
, pp. 227-232
-
-
Huelsenbeck, J.P.1
Rannala, B.2
-
5
-
-
0242353788
-
-
Sunderland, Massachusetts: Sinauer Associates
-
Felsenstein J (2004) Inferring phytogenies. Sunderland, Massachusetts: Sinauer Associates.
-
(2004)
Inferring phytogenies
-
-
Felsenstein, J.1
-
6
-
-
77951586581
-
Using Data-Display Networks for Exploratory Data Analysis in Phylogenetic Studies
-
Morrison DA, (2010) Using Data-Display Networks for Exploratory Data Analysis in Phylogenetic Studies. Molecular Biology and Evolution 27: 1044-1057.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 1044-1057
-
-
Morrison, D.A.1
-
7
-
-
77951579970
-
Evolutionary phylogenetic networks: models and issues
-
Heath L, Ramakrishnan N, editors. New York, USA: Springer, New York Inc
-
Nakhleh L (2010) Evolutionary phylogenetic networks: models and issues. Problem Solving Handbook in Computational Biology and Bioinformatics.; Heath L, Ramakrishnan N, editors. New York, USA: Springer, New York Inc. 125-158 p.
-
(2010)
Problem Solving Handbook in Computational Biology and Bioinformatics
, pp. 125-158
-
-
Nakhleh, L.1
-
8
-
-
66349108852
-
Computing galled networks from real data
-
Huson DH, Rupp R, Berry V, Gambette P, Paul C, (2009) Computing galled networks from real data. Bioinformatics 25: I85-I93.
-
(2009)
Bioinformatics
, vol.25
-
-
Huson, D.H.1
Rupp, R.2
Berry, V.3
Gambette, P.4
Paul, C.5
-
9
-
-
1542347067
-
Neighbor-Net: An agglomerative method for the construction of phylogenetic networks
-
Bryant D, Moulton V, (2004) Neighbor-Net: An agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution 21: 255-265.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 255-265
-
-
Bryant, D.1
Moulton, V.2
-
10
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
-
(1987)
Molecular Biology and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
11
-
-
0000055645
-
Molecular phylogenetic of Lilianae
-
In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors, Richmond: Royal Botanic Gardens, Kew
-
Chase MW, Duvall MR, Hills HG, Conran JG, Cox AV, et al. (1995) Molecular phylogenetic of Lilianae. In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors. Monocotyledons: systematics and evolution: Richmond: Royal Botanic Gardens, Kew. 109-137.
-
(1995)
Monocotyledons: Systematics and evolution
, pp. 109-137
-
-
Chase, M.W.1
Duvall, M.R.2
Hills, H.G.3
Conran, J.G.4
Cox, A.V.5
-
12
-
-
0000590850
-
Monocots systematics: a combined analysis
-
In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors, Royal Botanic Gardens, Kew: Richmond
-
Chase MW, Stevenson DW, Wilkin P, Rudall PJ (1995) Monocots systematics: a combined analysis. In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors. Monocotyledons: systematics and evolution. Royal Botanic Gardens, Kew: Richmond. 685-730.
-
(1995)
Monocotyledons: Systematics and evolution
, pp. 685-730
-
-
Chase, M.W.1
Stevenson, D.W.2
Wilkin, P.3
Rudall, P.J.4
-
13
-
-
0001472866
-
Higher-level systematics of the monocotyledons: an assessment of current knowledge and a new classification
-
In: Wilson KL, Morrison DA, editors, Melbourne, Australia: CSIRO
-
Chase MW, Soltis DE, Soltis PS, Rudall PJ, Fay MF, et al. (2000) Higher-level systematics of the monocotyledons: an assessment of current knowledge and a new classification. In: Wilson KL, Morrison DA, editors. Monocots: Systematics and evolution. Melbourne, Australia: CSIRO. 3-16.
-
(2000)
Monocots: Systematics and evolution
, pp. 3-16
-
-
Chase, M.W.1
Soltis, D.E.2
Soltis, P.S.3
Rudall, P.J.4
Fay, M.F.5
-
14
-
-
0033768330
-
Phylogenetics of Asphodelaceae (Asparagales): An analysis of plastid rbcL and trnL-F DNA sequences
-
Chase MW, De Bruijn AY, Cox AV, Reeves C, Rudall PJ, et al. (2000) Phylogenetics of Asphodelaceae (Asparagales): An analysis of plastid rbcL and trnL-F DNA sequences. Annals of Botany 86: 935-951.
-
(2000)
Annals of Botany
, vol.86
, pp. 935-951
-
-
Chase, M.W.1
De Bruijn, A.Y.2
Cox, A.V.3
Reeves, C.4
Rudall, P.J.5
-
15
-
-
33744494694
-
Multigene analyses of monocot relationships:A summary
-
Chase MW, Fay MF, Devey DS, Maurin O, Ronsted N, et al. (2006) Multigene analyses of monocot relationships:A summary. Aliso 22: 63-75.
-
(2006)
Aliso
, vol.22
, pp. 63-75
-
-
Chase, M.W.1
Fay, M.F.2
Devey, D.S.3
Maurin, O.4
Ronsted, N.5
-
16
-
-
70350242927
-
A phylogenetic classification of the land plants to accompany APG III
-
Chase MW, Reveal JL, (2009) A phylogenetic classification of the land plants to accompany APG III. Botanical Journal of the Linnean Society 161: 122-127.
-
(2009)
Botanical Journal of the Linnean Society
, vol.161
, pp. 122-127
-
-
Chase, M.W.1
Reveal, J.L.2
-
17
-
-
33947703719
-
Phylogeny, genome size, and chromosome evolution of Asparagales
-
Pires JC, Maureira IJ, Givnish TJ, Sytsma kj, (2006) Phylogeny, genome size, and chromosome evolution of Asparagales. In: Aliso Columbus JT, Friar EA, Hamilton CW, Porter JM, Prince LM, Simpson MG, eds. Monocots: Botanic Garden. 22: 287-304.
-
(2006)
Aliso
, vol.22
, pp. 287-304
-
-
Pires, J.C.1
Maureira, I.J.2
Givnish, T.J.3
Sytsma, K.J.4
Columbus, J.T.5
Friar, E.A.6
Hamilton, C.W.7
Porter, J.M.8
Prince, L.M.9
Simpson, M.G.10
-
18
-
-
0032442799
-
An ordinal classification for the families of flowering plants
-
APG
-
APG (1998) An ordinal classification for the families of flowering plants. Annals of the Missouri Botanical Garden 85: 531-553.
-
(1998)
Annals of the Missouri Botanical Garden
, vol.85
, pp. 531-553
-
-
-
19
-
-
0003599842
-
-
Springer-Verlag, Berlin
-
Dahlgren RMT, Clifford HT, Yeo PF (1985) The families of the monocotyledons. Structure, evolution, and taxonomy: Springer-Verlag, Berlin.
-
(1985)
The families of the monocotyledons. Structure, evolution, and taxonomy
-
-
Dahlgren, R.M.T.1
Clifford, H.T.2
Yeo, P.F.3
-
20
-
-
70350218974
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
-
APG III
-
APG III, (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society 161: 105-121.
-
(2009)
Botanical Journal of the Linnean Society
, vol.161
, pp. 105-121
-
-
-
21
-
-
70350220743
-
A subfamilial classification for the expanded asparagalean families Amaryllidaceae, Asparagaceae and Xanthorrhoeaceae
-
Chase MW, Reveal JL, Fay MF, (2009) A subfamilial classification for the expanded asparagalean families Amaryllidaceae, Asparagaceae and Xanthorrhoeaceae. Botanical Journal of the Linnean Society 161: 132-136.
-
(2009)
Botanical Journal of the Linnean Society
, vol.161
, pp. 132-136
-
-
Chase, M.W.1
Reveal, J.L.2
Fay, M.F.3
-
22
-
-
0002462538
-
Phylogenetic studies of Asparagales based on four plastid DNA regions
-
In: Wilson KL, Morrison DA, editors, Melbourne: CSIRO
-
Fay M, Rudall PJ, Sullivan S, Stobart KL, De Bruijn A, et al. (2000) Phylogenetic studies of Asparagales based on four plastid DNA regions. In: Wilson KL, Morrison DA, editors. Monocots: systematics and evolution. Melbourne: CSIRO. 360-371.
-
(2000)
Monocots: Systematics and evolution
, pp. 360-371
-
-
Fay, M.1
Rudall, P.J.2
Sullivan, S.3
Stobart, K.L.4
De Bruijn, A.5
-
23
-
-
38949143348
-
Robust inference of monocot deep phylogeny using an expanded multigene plastid data set
-
Graham SW, Zgurski JM, McPherson MA, Cherniawsky DM, Saarela JM, et al. (2006) Robust inference of monocot deep phylogeny using an expanded multigene plastid data set. Aliso 22: 3-21.
-
(2006)
Aliso
, vol.22
, pp. 3-21
-
-
Graham, S.W.1
Zgurski, J.M.2
McPherson, M.A.3
Cherniawsky, D.M.4
Saarela, J.M.5
-
24
-
-
0036176539
-
Homologies of inferior ovaries and septal nectaries in monocotyledons
-
Rudall P, (2002) Homologies of inferior ovaries and septal nectaries in monocotyledons. International Journal of Plant Sciences 163: 261-276.
-
(2002)
International Journal of Plant Sciences
, vol.163
, pp. 261-276
-
-
Rudall, P.1
-
25
-
-
0347723872
-
Angiosperm phylogeny based on matK sequence information
-
Hilu KW, Borsch T, Muller K, Soltis DE, Soltis PS, et al. (2003) Angiosperm phylogeny based on matK sequence information. American Journal of Botany 90: 1758-1776.
-
(2003)
American Journal of Botany
, vol.90
, pp. 1758-1776
-
-
Hilu, K.W.1
Borsch, T.2
Muller, K.3
Soltis, D.E.4
Soltis, P.S.5
-
26
-
-
78049266371
-
Molecular phylogenetics of Ruscaceae sensu lato and related families (Asparagales) based on plastid and nuclear DNA sequences
-
Kim JH, Kim DK, Forest F, Fay MF, Chase MW, (2010) Molecular phylogenetics of Ruscaceae sensu lato and related families (Asparagales) based on plastid and nuclear DNA sequences. Annals of Botany 106: 775-790.
-
(2010)
Annals of Botany
, vol.106
, pp. 775-790
-
-
Kim, J.H.1
Kim, D.K.2
Forest, F.3
Fay, M.F.4
Chase, M.W.5
-
27
-
-
84862699910
-
The phylogenetic relationships of Asparagales in Korea based on five plastid DNA regions
-
Kim DK, Kim JS, Kim JH, (2012) The phylogenetic relationships of Asparagales in Korea based on five plastid DNA regions. Journal of Plant Biology 55: 325-341.
-
(2012)
Journal of Plant Biology
, vol.55
, pp. 325-341
-
-
Kim, D.K.1
Kim, J.S.2
Kim, J.H.3
-
28
-
-
84860593956
-
Phylogeny of the Asparagales Based on Three Plastid and Two Mitochondrial Genes
-
Seberg O, Petersen G, Davis JI, Pires JC, Stevenson DW, et al. (2012) Phylogeny of the Asparagales Based on Three Plastid and Two Mitochondrial Genes. American Journal of Botany 99: 875-889.
-
(2012)
American Journal of Botany
, vol.99
, pp. 875-889
-
-
Seberg, O.1
Petersen, G.2
Davis, J.I.3
Pires, J.C.4
Stevenson, D.W.5
-
29
-
-
43549124170
-
Exploring contradictory phylogenetic relationships in yeasts
-
Wu Q, James SA, Roberts IN, Moulton V, Huber KT, (2008) Exploring contradictory phylogenetic relationships in yeasts. Fems Yeast Research 8: 641-650.
-
(2008)
Fems Yeast Research
, vol.8
, pp. 641-650
-
-
Wu, Q.1
James, S.A.2
Roberts, I.N.3
Moulton, V.4
Huber, K.T.5
-
31
-
-
11144300927
-
The age of major monocot groups inferred from 800+rbcL sequences
-
Janssen T, Bremer K, (2004) The age of major monocot groups inferred from 800+rbcL sequences. Botanical Journal of the Linnean Society 146: 385-398.
-
(2004)
Botanical Journal of the Linnean Society
, vol.146
, pp. 385-398
-
-
Janssen, T.1
Bremer, K.2
-
32
-
-
34247132504
-
The higher-level phylogeny of monocots based on matK, rbcL and 18S rDNA sequences
-
Li XX, Zhou ZK, (2007) The higher-level phylogeny of monocots based on matK, rbcL and 18S rDNA sequences. Acta Phytotaxonomica Sinica 45: 113-133.
-
(2007)
Acta Phytotaxonomica Sinica
, vol.45
, pp. 113-133
-
-
Li, X.X.1
Zhou, Z.K.2
-
33
-
-
33645802408
-
Comparative genomic analyses in Asparagus
-
Kuhl JC, Havey MJ, Martin WJ, Cheung F, Yuan QP, et al. (2005) Comparative genomic analyses in Asparagus. Genome 48: 1052-1060.
-
(2005)
Genome
, vol.48
, pp. 1052-1060
-
-
Kuhl, J.C.1
Havey, M.J.2
Martin, W.J.3
Cheung, F.4
Yuan, Q.P.5
-
34
-
-
37849053471
-
Estimating divergence times in large phylogenetic trees
-
Britton T, Anderson CL, Jacquet D, Lundqvist S, Bremer K, (2007) Estimating divergence times in large phylogenetic trees. Systematic Biology 56: 741-752.
-
(2007)
Systematic Biology
, vol.56
, pp. 741-752
-
-
Britton, T.1
Anderson, C.L.2
Jacquet, D.3
Lundqvist, S.4
Bremer, K.5
-
35
-
-
84864530626
-
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
-
Drummond AJ, Suchard MA, Xie D, Rambaut A, (2012) Bayesian Phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29: 1969-1973.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
38
-
-
44949251634
-
Conflict amongst chloroplast DNA sequences obscures the phylogeny of a group of Asplenium ferns
-
Shepherd LD, Holland BR, Perrie LR, (2008) Conflict amongst chloroplast DNA sequences obscures the phylogeny of a group of Asplenium ferns. Molecular Phylogenetics and Evolution 48: 176-187.
-
(2008)
Molecular Phylogenetics and Evolution
, vol.48
, pp. 176-187
-
-
Shepherd, L.D.1
Holland, B.R.2
Perrie, L.R.3
-
39
-
-
77954544485
-
A molecular phylogeny, morphology and classification of genera of Ranunculeae (Ranunculaceae)
-
Emadzade K, Lehnebach C, Lockhart P, Horandl E, (2010) A molecular phylogeny, morphology and classification of genera of Ranunculeae (Ranunculaceae). Taxon 59: 809-828.
-
(2010)
Taxon
, vol.59
, pp. 809-828
-
-
Emadzade, K.1
Lehnebach, C.2
Lockhart, P.3
Horandl, E.4
-
40
-
-
70449708285
-
A Nuclear Ribosomal DNA Phylogeny of Acer Inferred with Maximum Likelihood, Splits Graphs, and Motif Analysis of 606 Sequences
-
Grimm GW, Renner SS, Stamatakis A, Hemleben V, (2006) A Nuclear Ribosomal DNA Phylogeny of Acer Inferred with Maximum Likelihood, Splits Graphs, and Motif Analysis of 606 Sequences. Evolutionary Bioinformatics 2: 7-22.
-
(2006)
Evolutionary Bioinformatics
, vol.2
, pp. 7-22
-
-
Grimm, G.W.1
Renner, S.S.2
Stamatakis, A.3
Hemleben, V.4
-
41
-
-
28944434614
-
Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales
-
Fitzpatrick DA, Creevey CJ, McInerney JO, (2006) Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Molecular Biology and Evolution 23: 74-85.
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 74-85
-
-
Fitzpatrick, D.A.1
Creevey, C.J.2
McInerney, J.O.3
-
42
-
-
33750265138
-
Horizontal gene transfer in aminoacyl-tRNA synthetases including leucine-specific subtypes
-
Dohm JC, Vingron M, Staub E, (2006) Horizontal gene transfer in aminoacyl-tRNA synthetases including leucine-specific subtypes. Journal of Molecular Evolution 63: 437-447.
-
(2006)
Journal of Molecular Evolution
, vol.63
, pp. 437-447
-
-
Dohm, J.C.1
Vingron, M.2
Staub, E.3
-
43
-
-
3042637206
-
Using consensus networks to visualize contradictory evidence for species phylogeny
-
Holland BR, Huber KT, Moulton V, Lockhart PJ, (2004) Using consensus networks to visualize contradictory evidence for species phylogeny. Molecular Biology and Evolution 21: 1459-1461.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1459-1461
-
-
Holland, B.R.1
Huber, K.T.2
Moulton, V.3
Lockhart, P.J.4
-
44
-
-
34247874564
-
Genome survey sequencing of the wine spoilage yeast Dekkera (Brettanomyces) bruxellensis
-
Woolfit M, Rozpedowska E, Piskur J, Wolfe KH, (2007) Genome survey sequencing of the wine spoilage yeast Dekkera (Brettanomyces) bruxellensis. Eukaryotic Cell 6: 721-733.
-
(2007)
Eukaryotic Cell
, vol.6
, pp. 721-733
-
-
Woolfit, M.1
Rozpedowska, E.2
Piskur, J.3
Wolfe, K.H.4
-
45
-
-
84858591050
-
Quality and Quantity of Data Recovered from Massively Parallel Sequencing: Examples in Asparagales and Poaceae
-
Steele PR, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, et al. (2012) Quality and Quantity of Data Recovered from Massively Parallel Sequencing: Examples in Asparagales and Poaceae. American Journal of Botany 99: 330-348.
-
(2012)
American Journal of Botany
, vol.99
, pp. 330-348
-
-
Steele, P.R.1
Hertweck, K.L.2
Mayfield, D.3
McKain, M.R.4
Leebens-Mack, J.5
-
47
-
-
0037370533
-
Probabilistic analysis indicates discordant gene trees in chloroplast evolution
-
Vogl C, Badger J, Kearney P, Li M, Clegg M, et al. (2003) Probabilistic analysis indicates discordant gene trees in chloroplast evolution. Journal of Molecular Evolution 56: 330-340.
-
(2003)
Journal of Molecular Evolution
, vol.56
, pp. 330-340
-
-
Vogl, C.1
Badger, J.2
Kearney, P.3
Li, M.4
Clegg, M.5
-
49
-
-
8844267682
-
Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: Implications for plant molecular systematics
-
Wolfe AD, Randle CP, (2004) Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: Implications for plant molecular systematics. Systematic Botany 29: 1011-1020.
-
(2004)
Systematic Botany
, vol.29
, pp. 1011-1020
-
-
Wolfe, A.D.1
Randle, C.P.2
-
50
-
-
0026681831
-
Substitutional bias confounds inference of cyanelle origins from sequence data
-
Lockhart PJ, Howe CJ, Bryant DA, Beanland TJ, Larkum AWD, (1992) Substitutional bias confounds inference of cyanelle origins from sequence data. Journal of Molecular Evolution 34: 153-162.
-
(1992)
Journal of Molecular Evolution
, vol.34
, pp. 153-162
-
-
Lockhart, P.J.1
Howe, C.J.2
Bryant, D.A.3
Beanland, T.J.4
Larkum, A.W.D.5
-
51
-
-
35448965597
-
Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects
-
Wagele JW, Mayer C, (2007) Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects. Bmc Evolutionary Biology 7: 1471-2148.
-
(2007)
Bmc Evolutionary Biology
, vol.7
, pp. 1471-2148
-
-
Wagele, J.W.1
Mayer, C.2
-
53
-
-
0032023889
-
Taxonomic sampling, phylogenetic accuracy, and investigator bias
-
Hillis DM, (1998) Taxonomic sampling, phylogenetic accuracy, and investigator bias. Systematic Biology 47: 3-8.
-
(1998)
Systematic Biology
, vol.47
, pp. 3-8
-
-
Hillis, D.M.1
-
54
-
-
0036699885
-
Increased taxon sampling is advantageous for phylogenetic inference
-
Pollock DD, Zwickl DJ, McGuire JA, Hillis DM, (2002) Increased taxon sampling is advantageous for phylogenetic inference. Systematic Biology 51: 664-671.
-
(2002)
Systematic Biology
, vol.51
, pp. 664-671
-
-
Pollock, D.D.1
Zwickl, D.J.2
McGuire, J.A.3
Hillis, D.M.4
-
55
-
-
0036699481
-
Increased taxon sampling greatly reduces phylogenetic error
-
Zwickl DJ, Hillis DM, (2002) Increased taxon sampling greatly reduces phylogenetic error. Systematic Biology 51: 588-598.
-
(2002)
Systematic Biology
, vol.51
, pp. 588-598
-
-
Zwickl, D.J.1
Hillis, D.M.2
-
56
-
-
0000002524
-
Cladistic analysis of monocot families
-
In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors, Royal Botanic Garden, Kew
-
Stevenson DW, Loconte H (1995) Cladistic analysis of monocot families. In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors. Monocotyledons: systematics and evolution. Royal Botanic Garden, Kew. 543-578.
-
(1995)
Monocotyledons: Systematics and evolution
, pp. 543-578
-
-
Stevenson, D.W.1
Loconte, H.2
-
57
-
-
0031803548
-
Anatomical and molecular systematics of Asteliaceae and Hypoxidaceae
-
Rudall PJ, Chase MW, Cutler DF, Rusby J, De Bruijn AY, (1998) Anatomical and molecular systematics of Asteliaceae and Hypoxidaceae. Botanical Journal of the Linnean Society 127: 1-42.
-
(1998)
Botanical Journal of the Linnean Society
, vol.127
, pp. 1-42
-
-
Rudall, P.J.1
Chase, M.W.2
Cutler, D.F.3
Rusby, J.4
De Bruijn, A.Y.5
-
58
-
-
79956361337
-
Molecular phylogenetics of Hypoxidaceae - Evidence from plastid DNA data and inferences on morphology and biogeography
-
Kocyan A, Snijman DA, Forest F, Devey DS, Freudenstein JV, et al. (2011) Molecular phylogenetics of Hypoxidaceae- Evidence from plastid DNA data and inferences on morphology and biogeography. Molecular Phylogenetics and Evolution 60: 122-136.
-
(2011)
Molecular Phylogenetics and Evolution
, vol.60
, pp. 122-136
-
-
Kocyan, A.1
Snijman, D.A.2
Forest, F.3
Devey, D.S.4
Freudenstein, J.V.5
-
59
-
-
70350103638
-
Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times
-
Ho SYW, Phillips MJ, (2009) Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times. Systematic Biology 58: 367-380.
-
(2009)
Systematic Biology
, vol.58
, pp. 367-380
-
-
Ho, S.Y.W.1
Phillips, M.J.2
-
61
-
-
34548349201
-
Dating the origin of the Orchidaceae from a fossil orchid with its pollinator
-
Ramirez SR, Gravendeel B, Singer RB, Marshall CR, Pierce NE, (2007) Dating the origin of the Orchidaceae from a fossil orchid with its pollinator. Nature 448: 1042-1045.
-
(2007)
Nature
, vol.448
, pp. 1042-1045
-
-
Ramirez, S.R.1
Gravendeel, B.2
Singer, R.B.3
Marshall, C.R.4
Pierce, N.E.5
-
63
-
-
60249100736
-
Earliest Orchid Macrofossils: Early Miocene Dendrobium and Earina (Orchidaceae: Epidendroideae) from New Zealand
-
Conran JG, Bannister JM, Lee DE, (2009) Earliest Orchid Macrofossils: Early Miocene Dendrobium and Earina (Orchidaceae: Epidendroideae) from New Zealand. American Journal of Botany 96: 466-474.
-
(2009)
American Journal of Botany
, vol.96
, pp. 466-474
-
-
Conran, J.G.1
Bannister, J.M.2
Lee, D.E.3
-
64
-
-
77953346846
-
Reassessing the temporal evolution of orchids with new fossils and a Bayesian relaxed clock, with implications for the diversification of the rare South American genus Hoffmannseggella (Orchidaceae: Epidendroideae)
-
Gustafsson ALS, Verola CF, Antonelli A, (2010) Reassessing the temporal evolution of orchids with new fossils and a Bayesian relaxed clock, with implications for the diversification of the rare South American genus Hoffmannseggella (Orchidaceae: Epidendroideae). Bmc Evolutionary Biology 10: 1471-2148.
-
(2010)
Bmc Evolutionary Biology
, vol.10
, pp. 1471-2148
-
-
Gustafsson, A.L.S.1
Verola, C.F.2
Antonelli, A.3
-
65
-
-
51549120141
-
Iridaceae 'out of Australasia'? Phylogeny, biogeography, and divergence time based on plastid DNA sequences
-
Goldblatt P, Rodriguez A, Powell MP, Davies TJ, Manning JC, et al. (2008) Iridaceae 'out of Australasia'? Phylogeny, biogeography, and divergence time based on plastid DNA sequences. Systematic Botany 33: 495-508.
-
(2008)
Systematic Botany
, vol.33
, pp. 495-508
-
-
Goldblatt, P.1
Rodriguez, A.2
Powell, M.P.3
Davies, T.J.4
Manning, J.C.5
-
66
-
-
0002211918
-
The fossil history of the monocotyledons
-
In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors, Kew: Royal Botanic Gardens
-
Herendeen PS, Crane PR (1995) the fossil history of the monocotyledons. In: Rudall PJ, Cribb PJ, Cutler DF, Humphries CJ, editors. Monocotyledons: systematics and evolution. Kew: Royal Botanic Gardens. 1-21.
-
(1995)
Monocotyledons: Systematics and evolution
, pp. 1-21
-
-
Herendeen, P.S.1
Crane, P.R.2
-
67
-
-
0002594984
-
A rapid DNA isolation procedure for small quantities of fresh leaf tissue
-
Doyle JJ, Doyle JL, (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical bulletin 19: 11-15.
-
(1987)
Phytochemical Bulletin
, vol.19
, pp. 11-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
69
-
-
0000348343
-
A comparison of angiosperm phylogenies from nuclear 18S rDNA and rbcL sequences
-
Nickrent DL, Soltis DE, (1995) A comparison of angiosperm phylogenies from nuclear 18S rDNA and rbcL sequences. Annals of the Missouri Botanical Garden 82: 208-234.
-
(1995)
Annals of the Missouri Botanical Garden
, vol.82
, pp. 208-234
-
-
Nickrent, D.L.1
Soltis, D.E.2
-
70
-
-
0002687565
-
Molecular evolution of 18S rDNA in angiosperms: implications for character weighting in phylogenetic analysis
-
Soltis PS, Soltis DE, (1998) Molecular evolution of 18S rDNA in angiosperms: implications for character weighting in phylogenetic analysis. Molecular systematics of plants 2: 188-210.
-
(1998)
Molecular Systematics of Plants
, vol.2
, pp. 188-210
-
-
Soltis, P.S.1
Soltis, D.E.2
-
71
-
-
0000890115
-
Phylogenetic Inference in Saxifragaceae Sensu-Stricto and Gilia (Polemoniaceae) Using Matk Sequences
-
Johnson LA, Soltis DE, (1995) Phylogenetic Inference in Saxifragaceae Sensu-Stricto and Gilia (Polemoniaceae) Using Matk Sequences. Annals of the Missouri Botanical Garden 82: 149-175.
-
(1995)
Annals of the Missouri Botanical Garden
, vol.82
, pp. 149-175
-
-
Johnson, L.A.1
Soltis, D.E.2
-
72
-
-
0030733470
-
Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) using ndhF sequences
-
Terry RG, Brown GK, Olmstead RG, (1997) Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) using ndhF sequences. Systematic Botany 22: 333-345.
-
(1997)
Systematic Botany
, vol.22
, pp. 333-345
-
-
Terry, R.G.1
Brown, G.K.2
Olmstead, R.G.3
-
73
-
-
0028255725
-
Combining Data in Phylogenetic Systematics - an Empirical-Approach Using 3 Molecular-Data Sets in the Solanaceae
-
Olmstead RG, Sweere JA, (1994) Combining Data in Phylogenetic Systematics- an Empirical-Approach Using 3 Molecular-Data Sets in the Solanaceae. Systematic Biology 43: 467-481.
-
(1994)
Systematic Biology
, vol.43
, pp. 467-481
-
-
Olmstead, R.G.1
Sweere, J.A.2
-
75
-
-
0028189865
-
Phylogenetic relationships among genera in theLiliaceae-Asparagoideae-Polygonatae sl inferred fromrbcL gene sequence data
-
Shinwari ZK, Kato H, Terauchi R, Kawano S, (1994) Phylogenetic relationships among genera in theLiliaceae-Asparagoideae-Polygonatae sl inferred fromrbcL gene sequence data. Plant Systematics and Evolution 192: 263-277.
-
(1994)
Plant Systematics and Evolution
, vol.192
, pp. 263-277
-
-
Shinwari, Z.K.1
Kato, H.2
Terauchi, R.3
Kawano, S.4
-
76
-
-
0029759847
-
Resurrection of Themidaceae for the Brodiaea alliance, and recircumscription of Alliaceae, Amaryllidaceae and Agapanthoideae
-
Fay MF, Chase MW, (1996) Resurrection of Themidaceae for the Brodiaea alliance, and recircumscription of Alliaceae, Amaryllidaceae and Agapanthoideae. Taxon 45: 441-451.
-
(1996)
Taxon
, vol.45
, pp. 441-451
-
-
Fay, M.F.1
Chase, M.W.2
-
77
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
79
-
-
0034491886
-
The evolution of non-coding chloroplast DNA and its application in plant systematics
-
Kelchner SA, (2000) The evolution of non-coding chloroplast DNA and its application in plant systematics. Annals of the Missouri Botanical Garden 87: 482-498.
-
(2000)
Annals of the Missouri Botanical Garden
, vol.87
, pp. 482-498
-
-
Kelchner, S.A.1
-
80
-
-
34047267637
-
A canonical decomposition theory for metrics on a finite set
-
Bandelt HJ, Dress AWM, (1992) A canonical decomposition theory for metrics on a finite set. Advances in mathematics 92: 47-105.
-
(1992)
Advances in Mathematics
, vol.92
, pp. 47-105
-
-
Bandelt, H.J.1
Dress, A.W.M.2
-
81
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D, (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23: 254-267.
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
82
-
-
0003474197
-
-
ver. 4.10b. Sunderland, MA: Sinauer Associates.: Sinauer Associates, Sunderland, Massachusetts
-
Swofford DL (2007) PAUP*: phylogenetic analysis using parsimony, ver. 4.10b. Sunderland, MA: Sinauer Associates.: Sinauer Associates, Sunderland, Massachusetts.
-
(2007)
PAUP*: Phylogenetic analysis using parsimony
-
-
Swofford, D.L.1
-
83
-
-
84959747425
-
Toward defining the course of evolution: minimum change for a specific tree topology
-
Fitch WM, (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Biology 20: 406-416.
-
(1971)
Systematic Biology
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
84
-
-
84983540175
-
The retention index and the rescaled consistency index
-
Farris JS, (1989) The retention index and the rescaled consistency index. Cladistics 5: 417-419.
-
(1989)
Cladistics
, vol.5
, pp. 417-419
-
-
Farris, J.S.1
-
85
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution: 783-791.
-
(1985)
Evolution
, pp. 783-791
-
-
Felsenstein, J.1
-
86
-
-
26244453330
-
-
Available
-
Ronquist F, Huelsenbeck JP, van der Mark P (2005) MrBayes 3.1 Manual. Available: http://www.cse.unsw.edu.au/~binftools/birch/birchhomedir/dat/GDE/GDEHELP-solaris-amd64/dat/dGDE/GDEHELP-osx-x86_64/doc/mrbayes/mb3.1_manual.pdf. Accessed 2012 April 24.
-
(2005)
MrBayes 3.1 Manual
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
van der Mark, P.3
-
87
-
-
20444386770
-
-
v2 Evolutionary Biology Centre, Uppsala University. Program distributed by the author
-
Nylander J (2004) MrModeltest v2 Evolutionary Biology Centre, Uppsala University. Program distributed by the author.
-
(2004)
MrModeltest
-
-
Nylander, J.1
-
88
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. Bmc Evolutionary Biology 7: 214.
-
(2007)
Bmc Evolutionary Biology
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
90
-
-
0002749145
-
Spirematospermum chandlerae sp. Nov., an extinct species of Zingiberaceae from the North American Cretaceous
-
Friis EM, (1988) Spirematospermum chandlerae sp. Nov., an extinct species of Zingiberaceae from the North American Cretaceous. Tertiary Research 9: 7-12.
-
(1988)
Tertiary Research
, vol.9
, pp. 7-12
-
-
Friis, E.M.1
-
91
-
-
50849124850
-
-
v1.4. Available
-
Rambaut A, Drummond AJ (2007) BEAST website, Tracer v1.4. Available: http://beast.bio.ed.ac.uk/Tracer. Accessed 2012 July 8.
-
(2007)
Tracer
-
-
Rambaut, A.1
Drummond, A.J.2
|