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Volumn 8, Issue 2, 2013, Pages

The Poultry-Associated Microbiome: Network Analysis and Farm-to-Fork Characterizations

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CAMPYLOBACTER; CARCASS; CATERING SERVICE; CLOSTRIDIUM; CONTROLLED STUDY; FECES ANALYSIS; FOOD INDUSTRY; HIGH THROUGHPUT SEQUENCING; MICROBIAL COMMUNITY; MICROBIOME; NONHUMAN; ORGANISMAL INTERACTION; POPULATION ABUNDANCE; POULTRY FARMING; PREVOTELLA; PSEUDOMONAS; SHIGELLA; SPECIES IDENTIFICATION; TAXONOMY; VEILLONELLA; ZOONOSIS;

EID: 84874538737     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0057190     Document Type: Article
Times cited : (99)

References (83)
  • 2
    • 0036789803 scopus 로고    scopus 로고
    • Population biology of emerging and re-emerging pathogens
    • Woolhouse MEJ, (2002) Population biology of emerging and re-emerging pathogens. Trends in Microbiology 10: S3-S7.
    • (2002) Trends in Microbiology , vol.10
    • Woolhouse, M.E.J.1
  • 3
    • 36048962252 scopus 로고    scopus 로고
    • The growing threat of foodborne bacterial enteropathogens of animal origin
    • DuPont HL, (2007) The growing threat of foodborne bacterial enteropathogens of animal origin. Clinical Infectious Diseases 45: 1353-1361.
    • (2007) Clinical Infectious Diseases , vol.45 , pp. 1353-1361
    • DuPont, H.L.1
  • 5
    • 84855432040 scopus 로고    scopus 로고
    • Economic Burden from Health Losses Due to Foodborne Illness in the United States
    • Scharff RL, (2012) Economic Burden from Health Losses Due to Foodborne Illness in the United States. Journal of Food Protection 75: 123-131.
    • (2012) Journal of Food Protection , vol.75 , pp. 123-131
    • Scharff, R.L.1
  • 7
    • 84862928533 scopus 로고    scopus 로고
    • Pyrosequencing-based validation of a simple cell-suspension polymerase chain reaction assay for Campylobacter with application of high-processivity polymerase and novel internal amplification controls for rapid and specific detection
    • Oakley BB, Line JE, Berrang ME, Johnson JM, Buhr RJ, et al. (2012) Pyrosequencing-based validation of a simple cell-suspension polymerase chain reaction assay for Campylobacter with application of high-processivity polymerase and novel internal amplification controls for rapid and specific detection. Diagnostic Microbiology and Infectious Disease 72: 131-138.
    • (2012) Diagnostic Microbiology and Infectious Disease , vol.72 , pp. 131-138
    • Oakley, B.B.1    Line, J.E.2    Berrang, M.E.3    Johnson, J.M.4    Buhr, R.J.5
  • 8
    • 84855282079 scopus 로고    scopus 로고
    • Application of high-throughput sequencing to measure the performance of commonly used selective cultivation methods for the foodborne pathogen Campylobacter
    • Oakley BB, Morales CA, Line JE, Seal BS, Hiett KL, (2012) Application of high-throughput sequencing to measure the performance of commonly used selective cultivation methods for the foodborne pathogen Campylobacter. FEMS Microbiology Ecology 79: 327-336.
    • (2012) FEMS Microbiology Ecology , vol.79 , pp. 327-336
    • Oakley, B.B.1    Morales, C.A.2    Line, J.E.3    Seal, B.S.4    Hiett, K.L.5
  • 9
    • 81155128154 scopus 로고    scopus 로고
    • Modulations of the Chicken Cecal Microbiome and Metagenome in Response to Anticoccidial and Growth Promoter Treatment
    • Danzeisen JL, Kim HB, Isaacson RE, Tu ZJ, Johnson TJ (2011) Modulations of the Chicken Cecal Microbiome and Metagenome in Response to Anticoccidial and Growth Promoter Treatment. PLoS One 6.
    • (2011) PLoS One , vol.6
    • Danzeisen, J.L.1    Kim, H.B.2    Isaacson, R.E.3    Tu, Z.J.4    Johnson, T.J.5
  • 11
    • 50049088276 scopus 로고    scopus 로고
    • Molecular epidemiology of Campylobacter jejuni populations in dairy cattle, wildlife, and the environment in a farmland area
    • Kwan PS, Barrigas M, Bolton FJ, French NP, Gowland P, et al. (2008) Molecular epidemiology of Campylobacter jejuni populations in dairy cattle, wildlife, and the environment in a farmland area. Applied and Environmental Microbiology 74: 5130-5138.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 5130-5138
    • Kwan, P.S.1    Barrigas, M.2    Bolton, F.J.3    French, N.P.4    Gowland, P.5
  • 14
    • 33644965937 scopus 로고    scopus 로고
    • Campylobacter in poultry: filling an ecological niche
    • Lee MD, Newell DG, (2006) Campylobacter in poultry: filling an ecological niche. Avian diseases 50: 1-9.
    • (2006) Avian Diseases , vol.50 , pp. 1-9
    • Lee, M.D.1    Newell, D.G.2
  • 15
    • 1842481505 scopus 로고    scopus 로고
    • The role of litter beetles as potential reservoir for Salmonella enterica and thermophilic Campylobacter spp. between broiler flocks
    • Skov MN, Spencer AG, Hald B, Petersen L, Nauerby B, et al. (2004) The role of litter beetles as potential reservoir for Salmonella enterica and thermophilic Campylobacter spp. between broiler flocks. Avian Diseases 48: 9-18.
    • (2004) Avian Diseases , vol.48 , pp. 9-18
    • Skov, M.N.1    Spencer, A.G.2    Hald, B.3    Petersen, L.4    Nauerby, B.5
  • 16
    • 79960985960 scopus 로고    scopus 로고
    • Farm-to-fork safety. The new federal food safety law aims to prevent contamination rather than simply respond to it
    • Rittenberry R, (2011) Farm-to-fork safety. The new federal food safety law aims to prevent contamination rather than simply respond to it. Occupational health & safety 80: 66-68.
    • (2011) Occupational Health & Safety , vol.80 , pp. 66-68
    • Rittenberry, R.1
  • 17
    • 78649511201 scopus 로고    scopus 로고
    • Carry-over of thermophilic Campylobacter spp. between sequential and adjacent poultry flocks
    • Alter T, Weber RM, Hamedy A, Glunder G, (2011) Carry-over of thermophilic Campylobacter spp. between sequential and adjacent poultry flocks. Veterinary Microbiology 147: 90-95.
    • (2011) Veterinary Microbiology , vol.147 , pp. 90-95
    • Alter, T.1    Weber, R.M.2    Hamedy, A.3    Glunder, G.4
  • 19
    • 0034487843 scopus 로고    scopus 로고
    • Sequential spread of Campylobacter infection in a multipen broiler house
    • Shreeve JE, Toszeghy M, Pattison M, Newell DG, (2000) Sequential spread of Campylobacter infection in a multipen broiler house. Avian Diseases 44: 983-988.
    • (2000) Avian Diseases , vol.44 , pp. 983-988
    • Shreeve, J.E.1    Toszeghy, M.2    Pattison, M.3    Newell, D.G.4
  • 20
    • 45949090754 scopus 로고    scopus 로고
    • Occurrence and genotypes of Campylobacter in broiler flocks, other farm animals, and the environment during several rearing periods on selected poultry farms
    • Zweifel C, Scheu KD, Keel M, Renggli F, Stephan R, (2008) Occurrence and genotypes of Campylobacter in broiler flocks, other farm animals, and the environment during several rearing periods on selected poultry farms. International Journal of Food Microbiology 125: 182-187.
    • (2008) International Journal of Food Microbiology , vol.125 , pp. 182-187
    • Zweifel, C.1    Scheu, K.D.2    Keel, M.3    Renggli, F.4    Stephan, R.5
  • 22
    • 80052280066 scopus 로고    scopus 로고
    • From farm to fork follow-up of thermotolerant campylobacters throughout the broiler production chain and in human cases in a Hungarian county during a ten-months period
    • Damjanova I, Jakab M, Farkas T, Meszaros J, Galantai Z, et al. (2011) From farm to fork follow-up of thermotolerant campylobacters throughout the broiler production chain and in human cases in a Hungarian county during a ten-months period. International Journal of Food Microbiology 150: 95-102.
    • (2011) International Journal of Food Microbiology , vol.150 , pp. 95-102
    • Damjanova, I.1    Jakab, M.2    Farkas, T.3    Meszaros, J.4    Galantai, Z.5
  • 24
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse SM, Welch DM, Morrison HG, Sogin ML, (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898.
    • (2010) Environ Microbiol , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 25
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
    • Kunin V, Engelbrektson A, Ochman H, Hugenholtz P, (2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12: 118-123.
    • (2010) Environ Microbiol , vol.12 , pp. 118-123
    • Kunin, V.1    Engelbrektson, A.2    Ochman, H.3    Hugenholtz, P.4
  • 27
    • 0021779934 scopus 로고
    • Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
    • Staley JT, Konopka A, (1985) Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 39: 321-346.
    • (1985) Annu Rev Microbiol , vol.39 , pp. 321-346
    • Staley, J.T.1    Konopka, A.2
  • 30
    • 0242489005 scopus 로고    scopus 로고
    • Diversity and succession of the intestinal bacterial community of the maturing broiler chicken
    • Lu J, Idris U, Harmon B, Hofacre C, Maurer JJ, et al. (2003) Diversity and succession of the intestinal bacterial community of the maturing broiler chicken. Appl Environ Microbiol 69: 6816-6824.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6816-6824
    • Lu, J.1    Idris, U.2    Harmon, B.3    Hofacre, C.4    Maurer, J.J.5
  • 31
    • 51449108782 scopus 로고    scopus 로고
    • Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome
    • Qu A, Brulc JM, Wilson MK, Law BF, Theoret JR, et al. (2008) Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome. PLoS One 3: e2945.
    • (2008) PLoS One , vol.3
    • Qu, A.1    Brulc, J.M.2    Wilson, M.K.3    Law, B.F.4    Theoret, J.R.5
  • 32
    • 84861134838 scopus 로고    scopus 로고
    • Abrupt temporal fluctuations in the chicken fecal microbiota are explained by its gastrointestinal origin
    • Sekelja M, Rud I, Knutsen SH, Denstadli V, Westereng B, et al. (2012) Abrupt temporal fluctuations in the chicken fecal microbiota are explained by its gastrointestinal origin. Appl Environ Microbiol 78: 2941-2948.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 2941-2948
    • Sekelja, M.1    Rud, I.2    Knutsen, S.H.3    Denstadli, V.4    Westereng, B.5
  • 34
    • 84855949949 scopus 로고    scopus 로고
    • Using network analysis to explore co-occurrence patterns in soil microbial communities
    • Barberan A, Bates ST, Casamayor EO, Fierer N, (2012) Using network analysis to explore co-occurrence patterns in soil microbial communities. ISME J 6: 343-351.
    • (2012) ISME J , vol.6 , pp. 343-351
    • Barberan, A.1    Bates, S.T.2    Casamayor, E.O.3    Fierer, N.4
  • 35
    • 84863920287 scopus 로고    scopus 로고
    • Microbial interactions: from networks to models
    • Faust K, Raes J, (2012) Microbial interactions: from networks to models. Nature Reviews Microbiology 10: 538-550.
    • (2012) Nature Reviews Microbiology , vol.10 , pp. 538-550
    • Faust, K.1    Raes, J.2
  • 37
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ, (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Applied and Environmental Microbiology 66: 5488-5491.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 38
    • 33947378258 scopus 로고    scopus 로고
    • Quantitative analysis of the intestinal bacterial community in one- to three-week-old commercially reared broiler chickens fed conventional or antibiotic-free vegetable-based diets
    • Wise MG, Siragusa GR, (2007) Quantitative analysis of the intestinal bacterial community in one- to three-week-old commercially reared broiler chickens fed conventional or antibiotic-free vegetable-based diets. J Appl Microbiol 102: 1138-1149.
    • (2007) J Appl Microbiol , vol.102 , pp. 1138-1149
    • Wise, M.G.1    Siragusa, G.R.2
  • 39
    • 79960159269 scopus 로고    scopus 로고
    • Chicken intestine microbiota following the administration of lupulone, a hop-based antimicrobial
    • Tillman GE, Haas GJ, Wise MG, Oakley B, Smith MA, et al. (2011) Chicken intestine microbiota following the administration of lupulone, a hop-based antimicrobial. FEMS Microbiol Ecol.
    • (2011) FEMS Microbiol Ecol
    • Tillman, G.E.1    Haas, G.J.2    Wise, M.G.3    Oakley, B.4    Smith, M.A.5
  • 40
    • 84871475760 scopus 로고    scopus 로고
    • Comparison of cumulative drip sampling with whole carcass rinses for estimation of Campylobacter species and quality indicator organisms associated with processed broiler chickens
    • Line JE, Oakley BB, Stern NJ, (2013) Comparison of cumulative drip sampling with whole carcass rinses for estimation of Campylobacter species and quality indicator organisms associated with processed broiler chickens. Poultry science 92: 218-224.
    • (2013) Poultry Science , vol.92 , pp. 218-224
    • Line, J.E.1    Oakley, B.B.2    Stern, N.J.3
  • 41
    • 84864344576 scopus 로고    scopus 로고
    • Contrasting patterns of niche partitioning between two anaerobic terminal oxidizers of organic matter
    • Oakley BB, Carbonero F, Dowd SE, Hawkins RJ, Purdy KJ (2011) Contrasting patterns of niche partitioning between two anaerobic terminal oxidizers of organic matter. ISME J.
    • (2011) ISME J.
    • Oakley, B.B.1    Carbonero, F.2    Dowd, S.E.3    Hawkins, R.J.4    Purdy, K.J.5
  • 42
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5
  • 44
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, et al. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5
  • 47
    • 80054913451 scopus 로고    scopus 로고
    • FLASH: fast length adjustment of short reads to improve genome assemblies
    • Magoc T, Salzberg SL, (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27: 2957-2963.
    • (2011) Bioinformatics , vol.27 , pp. 2957-2963
    • Magoc, T.1    Salzberg, S.L.2
  • 49
    • 84862631902 scopus 로고    scopus 로고
    • Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
    • Soergel DAW, Dey N, Knight R, Brenner SE, (2012) Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences. ISME J 6: 1440-1444.
    • (2012) ISME J , vol.6 , pp. 1440-1444
    • Soergel, D.A.W.1    Dey, N.2    Knight, R.3    Brenner, S.E.4
  • 50
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC, (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 51
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li W, Godzik A, (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 53
    • 9644268216 scopus 로고    scopus 로고
    • Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR
    • Rinttila T, Kassinen A, Malinen E, Krogius L, Palva A, (2004) Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR. J Appl Microbiol 97: 1166-1177.
    • (2004) J Appl Microbiol , vol.97 , pp. 1166-1177
    • Rinttila, T.1    Kassinen, A.2    Malinen, E.3    Krogius, L.4    Palva, A.5
  • 54
    • 79960846240 scopus 로고    scopus 로고
    • ThermoPhyl: a software tool for selecting phylogenetically optimized conventional and quantitative-PCR taxon-targeted assays for use with complex samples
    • Oakley BB, Dowd SE, Purdy KJ, (2011) ThermoPhyl: a software tool for selecting phylogenetically optimized conventional and quantitative-PCR taxon-targeted assays for use with complex samples. FEMS Microbiol Ecol 77: 17-27.
    • (2011) FEMS Microbiol Ecol , vol.77 , pp. 17-27
    • Oakley, B.B.1    Dowd, S.E.2    Purdy, K.J.3
  • 57
    • 0037313188 scopus 로고    scopus 로고
    • Evaluation of broiler litter with reference to the microbial composition as assessed by using 16S rRNA and functional gene markers
    • Lu J, Sanchez S, Hofacre C, Maurer JJ, Harmon BG, et al. (2003) Evaluation of broiler litter with reference to the microbial composition as assessed by using 16S rRNA and functional gene markers. Appl Environ Microbiol 69: 901-908.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 901-908
    • Lu, J.1    Sanchez, S.2    Hofacre, C.3    Maurer, J.J.4    Harmon, B.G.5
  • 58
    • 0036136459 scopus 로고    scopus 로고
    • 16S rRNA-based analysis of microbiota from the cecum of broiler chickens
    • Zhu XY, Zhong T, Pandya Y, Joerger RD, (2002) 16S rRNA-based analysis of microbiota from the cecum of broiler chickens. Appl Environ Microbiol 68: 124-137.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 124-137
    • Zhu, X.Y.1    Zhong, T.2    Pandya, Y.3    Joerger, R.D.4
  • 59
    • 77954648000 scopus 로고    scopus 로고
    • Quantification of Faecalibacterium prausnitzii- and Subdoligranulum variabile-like bacteria in the cecum of chickens by real-time PCR
    • Lund M, Bjerrum L, Pedersen K, (2010) Quantification of Faecalibacterium prausnitzii- and Subdoligranulum variabile-like bacteria in the cecum of chickens by real-time PCR. Poultry science 89: 1217-1224.
    • (2010) Poultry Science , vol.89 , pp. 1217-1224
    • Lund, M.1    Bjerrum, L.2    Pedersen, K.3
  • 60
    • 0004223311 scopus 로고    scopus 로고
    • Gaithersburg, MD: Aspen Publishers, Inc
    • Jay JM (2000) Modern Food Microbiology. Gaithersburg, MD: Aspen Publishers, Inc.
    • (2000) Modern Food Microbiology
    • Jay, J.M.1
  • 61
    • 80155175002 scopus 로고    scopus 로고
    • Use of pyrosequencing and denaturing gradient gel electrophoresis to examine the effects of probiotics and essential oil blends on digestive microflora in broilers under mixed Eimeria infection
    • Hume ME, Barbosa NA, Dowd SE, Sakomura NK, Nalian AG, et al. (2011) Use of pyrosequencing and denaturing gradient gel electrophoresis to examine the effects of probiotics and essential oil blends on digestive microflora in broilers under mixed Eimeria infection. Foodborne Pathog Dis 8: 1159-1167.
    • (2011) Foodborne Pathog Dis , vol.8 , pp. 1159-1167
    • Hume, M.E.1    Barbosa, N.A.2    Dowd, S.E.3    Sakomura, N.K.4    Nalian, A.G.5
  • 62
    • 0035129063 scopus 로고    scopus 로고
    • Difficulty in recovering inoculated Campylobacter jejuni from dry poultry-associated samples
    • Cox NA, Berrang ME, Stern NJ, Musgrove MT, (2001) Difficulty in recovering inoculated Campylobacter jejuni from dry poultry-associated samples. J Food Prot 64: 252-254.
    • (2001) J Food Prot , vol.64 , pp. 252-254
    • Cox, N.A.1    Berrang, M.E.2    Stern, N.J.3    Musgrove, M.T.4
  • 64
    • 79960895899 scopus 로고    scopus 로고
    • Oral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison
    • Ahn J, Yang L, Paster BJ, Ganly I, Morris L, et al. (2011) Oral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison. PLoS One 6: e22788.
    • (2011) PLoS One , vol.6
    • Ahn, J.1    Yang, L.2    Paster, B.J.3    Ganly, I.4    Morris, L.5
  • 65
    • 84355163063 scopus 로고    scopus 로고
    • Saliva microbiomes distinguish caries-active from healthy human populations
    • Yang F, Zeng X, Ning K, Liu KL, Lo CC, et al. (2012) Saliva microbiomes distinguish caries-active from healthy human populations. ISME J 6: 1-10.
    • (2012) ISME J , vol.6 , pp. 1-10
    • Yang, F.1    Zeng, X.2    Ning, K.3    Liu, K.L.4    Lo, C.C.5
  • 67
    • 0029913389 scopus 로고    scopus 로고
    • Effect of oxygen, inoculum composition and flow rate on development of mixed-culture oral biofilms
    • Bradshaw DJ, Marsh PD, Allison C, Schilling KM, (1996) Effect of oxygen, inoculum composition and flow rate on development of mixed-culture oral biofilms. Microbiology-UK 142: 623-629.
    • (1996) Microbiology-UK , vol.142 , pp. 623-629
    • Bradshaw, D.J.1    Marsh, P.D.2    Allison, C.3    Schilling, K.M.4
  • 68
    • 0000334032 scopus 로고
    • Bactericidal effect of chlorine on attached Salmonellae with and without sonication
    • Lillard HS, (1993) Bactericidal effect of chlorine on attached Salmonellae with and without sonication. Journal of Food Protection 56: 716-717.
    • (1993) Journal of Food Protection , vol.56 , pp. 716-717
    • Lillard, H.S.1
  • 69
    • 0142031583 scopus 로고    scopus 로고
    • Comparison of sampling methods for the detection of Salmonella on whole broiler carcases purchased from retail outlets
    • Simmons M, Fletcher DL, Berrang ME, Cason JA, (2003) Comparison of sampling methods for the detection of Salmonella on whole broiler carcases purchased from retail outlets. Journal of Food Protection 66: 1768-1770.
    • (2003) Journal of Food Protection , vol.66 , pp. 1768-1770
    • Simmons, M.1    Fletcher, D.L.2    Berrang, M.E.3    Cason, J.A.4
  • 70
    • 0001261878 scopus 로고
    • Factors affecting the persistance of Salmonella during the processing of poultry
    • Lillard HS, (1989) Factors affecting the persistance of Salmonella during the processing of poultry. Journal of Food Protection 52: 829-832.
    • (1989) Journal of Food Protection , vol.52 , pp. 829-832
    • Lillard, H.S.1
  • 71
    • 46549089845 scopus 로고    scopus 로고
    • Comparison of poultry exudate and carcass rinse sampling methods for the recovery of Campylobacter spp. subtypes demonstrates unique subtypes recovered from exudate
    • Simmons M, Hiett KL, Stern NJ, Frank JF, (2008) Comparison of poultry exudate and carcass rinse sampling methods for the recovery of Campylobacter spp. subtypes demonstrates unique subtypes recovered from exudate. Journal of Microbiological Methods 74: 89-93.
    • (2008) Journal of Microbiological Methods , vol.74 , pp. 89-93
    • Simmons, M.1    Hiett, K.L.2    Stern, N.J.3    Frank, J.F.4
  • 72
    • 34548028239 scopus 로고    scopus 로고
    • Campylobacter jejuni: molecular biology and pathogenesis
    • Young KT, Davis LM, DiRita VJ, (2007) Campylobacter jejuni: molecular biology and pathogenesis. Nat Rev Micro 5: 665-679.
    • (2007) Nat Rev Micro , vol.5 , pp. 665-679
    • Young, K.T.1    Davis, L.M.2    DiRita, V.J.3
  • 73
    • 71049180352 scopus 로고    scopus 로고
    • Gene context analysis in the Integrated Microbial Genomes (IMG) data management system
    • Mavromatis K, Chu K, Ivanova N, Hooper SD, Markowitz VM, et al. (2009) Gene context analysis in the Integrated Microbial Genomes (IMG) data management system. PLoS One 4: e7979.
    • (2009) PLoS One , vol.4
    • Mavromatis, K.1    Chu, K.2    Ivanova, N.3    Hooper, S.D.4    Markowitz, V.M.5
  • 74
    • 0035543218 scopus 로고    scopus 로고
    • Distribution of Campylobacter spp. in selected US poultry production and processing operations
    • Stern NJ, Fedorka-Cray P, Bailey JS, Cox NA, Craven SE, et al. (2001) Distribution of Campylobacter spp. in selected US poultry production and processing operations. Journal of Food Protection 64: 1705-1710.
    • (2001) Journal of Food Protection , vol.64 , pp. 1705-1710
    • Stern, N.J.1    Fedorka-Cray, P.2    Bailey, J.S.3    Cox, N.A.4    Craven, S.E.5
  • 75
    • 0034420688 scopus 로고    scopus 로고
    • Presence and level of Campylobacter spp. on broiler carcasses throughout the processing plant
    • Berrang ME, Dickens JA, (2000) Presence and level of Campylobacter spp. on broiler carcasses throughout the processing plant. Journal of Applied Poultry Research 9: 43-47.
    • (2000) Journal of Applied Poultry Research , vol.9 , pp. 43-47
    • Berrang, M.E.1    Dickens, J.A.2
  • 76
    • 0002665065 scopus 로고    scopus 로고
    • Campylobacter in the food supply
    • Nachamkin I, Blaser MJ, editors, Washington, D.C.: ASM Press
    • Jacobs-Reitsma WF (2000) Campylobacter in the food supply. In: Nachamkin I, Blaser MJ, editors. Campylobacter. Washington, D.C.: ASM Press.
    • (2000) Campylobacter
    • Jacobs-Reitsma, W.F.1
  • 77
    • 34147097696 scopus 로고    scopus 로고
    • Fresh and further-processed poultry
    • Lund BM, Baird-Parker TC, Gould GW, editors, Gaithersburg, MD: Aspen Publishers, Inc
    • Mead GC (2000) Fresh and further-processed poultry. In: Lund BM, Baird-Parker TC, Gould GW, editors. The microbiological safety and quality of food. Gaithersburg, MD: Aspen Publishers, Inc.
    • (2000) The microbiological safety and quality of food
    • Mead, G.C.1
  • 78
    • 0020159282 scopus 로고
    • Intestinal colonization and competitive exclusion of Campylobacter fetus subsp. jejuni in young chicks
    • Soerjadi AS, Snoeyenbos GH, Weinack OM, (1982) Intestinal colonization and competitive exclusion of Campylobacter fetus subsp. jejuni in young chicks. Avian Diseases 26: 520-524.
    • (1982) Avian Diseases , vol.26 , pp. 520-524
    • Soerjadi, A.S.1    Snoeyenbos, G.H.2    Weinack, O.M.3
  • 79
    • 0028395007 scopus 로고
    • Mucosal competitive exclusion to diminish colonization of chickens by Campylobacter jejuni
    • Stern NJ, (1994) Mucosal competitive exclusion to diminish colonization of chickens by Campylobacter jejuni. Poultry Science 73: 402-407.
    • (1994) Poultry Science , vol.73 , pp. 402-407
    • Stern, N.J.1
  • 80
    • 84863989287 scopus 로고    scopus 로고
    • The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases
    • Khan MT, Duncan SH, Stams AJ, van Dijl JM, Flint HJ, et al. (2012) The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases. ISME J 6: 1578-1585.
    • (2012) ISME J , vol.6 , pp. 1578-1585
    • Khan, M.T.1    Duncan, S.H.2    Stams, A.J.3    van Dijl, J.M.4    Flint, H.J.5
  • 81
    • 78650375392 scopus 로고    scopus 로고
    • Antibiotic manipulation of intestinal microbiota to identify microbes associated with Campylobacter jejuni exclusion in poultry
    • Scupham AJ, Jones JA, Rettedal EA, Weber TE, (2010) Antibiotic manipulation of intestinal microbiota to identify microbes associated with Campylobacter jejuni exclusion in poultry. Appl Environ Microbiol 76: 8026-8032.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 8026-8032
    • Scupham, A.J.1    Jones, J.A.2    Rettedal, E.A.3    Weber, T.E.4
  • 82
    • 40149103278 scopus 로고    scopus 로고
    • Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
    • Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R, (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5: 235-237.
    • (2008) Nat Methods , vol.5 , pp. 235-237
    • Hamady, M.1    Walker, J.J.2    Harris, J.K.3    Gold, N.J.4    Knight, R.5
  • 83
    • 56649124715 scopus 로고    scopus 로고
    • The influence of sex, handedness, and washing on the diversity of hand surface bacteria
    • Fierer N, Hamady M, Lauber CL, Knight R, (2008) The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci U S A 105: 17994-17999.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 17994-17999
    • Fierer, N.1    Hamady, M.2    Lauber, C.L.3    Knight, R.4


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