-
1
-
-
1642458353
-
RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon
-
Buratti E., et al. RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon. Mol. Cell. Biol. 2004, 24:1387-1400.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 1387-1400
-
-
Buratti, E.1
-
3
-
-
60149112933
-
The dynamic landscapes of RNA architecture
-
Cruz J.A., Westhof E. The dynamic landscapes of RNA architecture. Cell 2009, 136:604-609.
-
(2009)
Cell
, vol.136
, pp. 604-609
-
-
Cruz, J.A.1
Westhof, E.2
-
4
-
-
60149103676
-
The centrality of RNA
-
Sharp P.A. The centrality of RNA. Cell 2009, 136:577-580.
-
(2009)
Cell
, vol.136
, pp. 577-580
-
-
Sharp, P.A.1
-
5
-
-
80055088036
-
The ribosome: a molecular machine powered by RNA
-
Trappl K., Polacek N. The ribosome: a molecular machine powered by RNA. Met. Ions Life Sci. 2011, 9:253-275.
-
(2011)
Met. Ions Life Sci.
, vol.9
, pp. 253-275
-
-
Trappl, K.1
Polacek, N.2
-
6
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
Hindorff L.A., et al. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:9362-9367.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 9362-9367
-
-
Hindorff, L.A.1
-
7
-
-
79958269950
-
RNA-protein interactions in human health and disease
-
Khalil A.M., Rinn J.L. RNA-protein interactions in human health and disease. Semin. Cell Dev. Biol. 2011, 22:359-365.
-
(2011)
Semin. Cell Dev. Biol.
, vol.22
, pp. 359-365
-
-
Khalil, A.M.1
Rinn, J.L.2
-
8
-
-
84860765680
-
Systematic discovery of structural elements governing stability of mammalian messenger RNAs
-
Goodarzi H., et al. Systematic discovery of structural elements governing stability of mammalian messenger RNAs. Nature 2012, 485:264-268.
-
(2012)
Nature
, vol.485
, pp. 264-268
-
-
Goodarzi, H.1
-
9
-
-
84861121932
-
Global analysis of RNA secondary structure in two metazoans
-
Li F., et al. Global analysis of RNA secondary structure in two metazoans. Cell Rep. 2012, 1:69-82.
-
(2012)
Cell Rep.
, vol.1
, pp. 69-82
-
-
Li, F.1
-
10
-
-
84871887837
-
Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome
-
Li F., et al. Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome. Plant Cell 2012, 24:4346-4359.
-
(2012)
Plant Cell
, vol.24
, pp. 4346-4359
-
-
Li, F.1
-
11
-
-
0035912793
-
Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome
-
Keene J.D. Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:7018-7024.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 7018-7024
-
-
Keene, J.D.1
-
12
-
-
84862494264
-
Identification of RNA-protein interaction networks using PAR-CLIP
-
Ascano M., Hafner M., Cekan P., Gerstberger S., Tuschl T. Identification of RNA-protein interaction networks using PAR-CLIP. Wiley Interdiscip. Rev. RNA 2012, 3:159-177.
-
(2012)
Wiley Interdiscip. Rev. RNA
, vol.3
, pp. 159-177
-
-
Ascano, M.1
Hafner, M.2
Cekan, P.3
Gerstberger, S.4
Tuschl, T.5
-
13
-
-
34250735674
-
RNA regulons: coordination of post-transcriptional events
-
Keene J.D. RNA regulons: coordination of post-transcriptional events. Nat. Rev. Genet. 2007, 8:533-543.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 533-543
-
-
Keene, J.D.1
-
14
-
-
44449166478
-
RNA-binding proteins and post-transcriptional gene regulation
-
Glisovic T., Bachorik J.L., Yong J., Dreyfuss G. RNA-binding proteins and post-transcriptional gene regulation. FEBS Lett. 2008, 582:1977-1986.
-
(2008)
FEBS Lett.
, vol.582
, pp. 1977-1986
-
-
Glisovic, T.1
Bachorik, J.L.2
Yong, J.3
Dreyfuss, G.4
-
15
-
-
0018879004
-
Influence of mRNA secondary structure on binding and migration of 40S ribosomal subunits
-
Kozak M. Influence of mRNA secondary structure on binding and migration of 40S ribosomal subunits. Cell 1980, 19:79-90.
-
(1980)
Cell
, vol.19
, pp. 79-90
-
-
Kozak, M.1
-
16
-
-
0005218668
-
Influences of mRNA secondary structure on initiation by eukaryotic ribosomes
-
Kozak M. Influences of mRNA secondary structure on initiation by eukaryotic ribosomes. Proc. Natl. Acad. Sci. U.S.A. 1986, 83:2850-2854.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 2850-2854
-
-
Kozak, M.1
-
17
-
-
4644242349
-
RNA silencing in plants
-
Baulcombe D. RNA silencing in plants. Nature 2004, 431:356-363.
-
(2004)
Nature
, vol.431
, pp. 356-363
-
-
Baulcombe, D.1
-
18
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades M.W., Bartel D.P. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell 2004, 14:787-799.
-
(2004)
Mol. Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
19
-
-
84862591360
-
Molecular recognition and function of riboswitches
-
Serganov A., Patel D.J. Molecular recognition and function of riboswitches. Curr. Opin. Struct. Biol. 2012, 22:279-286.
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 279-286
-
-
Serganov, A.1
Patel, D.J.2
-
20
-
-
80052973462
-
Prospects for riboswitch discovery and analysis
-
Breaker R.R. Prospects for riboswitch discovery and analysis. Mol. Cell 2011, 43:867-879.
-
(2011)
Mol. Cell
, vol.43
, pp. 867-879
-
-
Breaker, R.R.1
-
21
-
-
18744396047
-
Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria
-
Mironov A.S., et al. Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria. Cell 2002, 111:747-756.
-
(2002)
Cell
, vol.111
, pp. 747-756
-
-
Mironov, A.S.1
-
22
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
Winkler W., Nahvi A., Breaker R.R. Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 2002, 419:952-956.
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
23
-
-
36248989143
-
Riboswitch-dependent gene regulation and its evolution in the plant kingdom
-
Bocobza S., et al. Riboswitch-dependent gene regulation and its evolution in the plant kingdom. Genes Dev. 2007, 21:2874-2879.
-
(2007)
Genes Dev.
, vol.21
, pp. 2874-2879
-
-
Bocobza, S.1
-
24
-
-
37849045636
-
Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs
-
Wachter A., et al. Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs. Plant Cell 2007, 19:3437-3450.
-
(2007)
Plant Cell
, vol.19
, pp. 3437-3450
-
-
Wachter, A.1
-
25
-
-
34548712632
-
Searching genomes for ribozymes and riboswitches
-
Hammann C., Westhof E. Searching genomes for ribozymes and riboswitches. Genome Biol. 2007, 8:210.
-
(2007)
Genome Biol.
, vol.8
, pp. 210
-
-
Hammann, C.1
Westhof, E.2
-
26
-
-
0030266993
-
RNA structure and the regulation of gene expression
-
Klaff P., Riesner D., Steger G. RNA structure and the regulation of gene expression. Plant Mol. Biol. 1996, 32:89-106.
-
(1996)
Plant Mol. Biol.
, vol.32
, pp. 89-106
-
-
Klaff, P.1
Riesner, D.2
Steger, G.3
-
27
-
-
0002681086
-
Posttranscriptional regulation of gene expression in plants
-
Gallie D.R. Posttranscriptional regulation of gene expression in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1993, 44:77-105.
-
(1993)
Annu. Rev. Plant Physiol. Plant Mol. Biol.
, vol.44
, pp. 77-105
-
-
Gallie, D.R.1
-
28
-
-
2542642407
-
Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana
-
Kawaguchi R., Girke T., Bray E.A., Bailey-Serres J. Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. Plant J. 2004, 38:823-839.
-
(2004)
Plant J.
, vol.38
, pp. 823-839
-
-
Kawaguchi, R.1
Girke, T.2
Bray, E.A.3
Bailey-Serres, J.4
-
29
-
-
33745663309
-
Large-scale analysis of mRNA translation states during sucrose starvation in Arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control
-
Nicolai M., et al. Large-scale analysis of mRNA translation states during sucrose starvation in Arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control. Plant Physiol. 2006, 141:663-673.
-
(2006)
Plant Physiol.
, vol.141
, pp. 663-673
-
-
Nicolai, M.1
-
30
-
-
77949365164
-
Genome-wide analyses of early translational responses to elevated temperature and high salinity in Arabidopsis thaliana
-
Matsuura H., Ishibashi Y., Shinmyo A., Kanaya S., Kato K. Genome-wide analyses of early translational responses to elevated temperature and high salinity in Arabidopsis thaliana. Plant Cell Physiol. 2010, 51:448-462.
-
(2010)
Plant Cell Physiol.
, vol.51
, pp. 448-462
-
-
Matsuura, H.1
Ishibashi, Y.2
Shinmyo, A.3
Kanaya, S.4
Kato, K.5
-
31
-
-
13944270653
-
MRNA sequence features that contribute to translational regulation in Arabidopsis
-
Kawaguchi R., Bailey-Serres J. mRNA sequence features that contribute to translational regulation in Arabidopsis. Nucleic Acids Res. 2005, 33:955-965.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 955-965
-
-
Kawaguchi, R.1
Bailey-Serres, J.2
-
32
-
-
77649245858
-
Translation efficiency is determined by both codon bias and folding energy
-
Tuller T., Waldman Y.Y., Kupiec M., Ruppin E. Translation efficiency is determined by both codon bias and folding energy. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:3645-3650.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 3645-3650
-
-
Tuller, T.1
Waldman, Y.Y.2
Kupiec, M.3
Ruppin, E.4
-
33
-
-
77649198142
-
A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes
-
Gu W., Zhou T., Wilke C.O. A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes. PLoS Comp. Biol. 2010, 6:e1000664.
-
(2010)
PLoS Comp. Biol.
, vol.6
-
-
Gu, W.1
Zhou, T.2
Wilke, C.O.3
-
34
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136:669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
35
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades M.W., et al. Prediction of plant microRNA targets. Cell 2002, 110:513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
-
36
-
-
34247258888
-
Potent effect of target structure on microRNA function
-
Long D., et al. Potent effect of target structure on microRNA function. Nat. Struct. Mol. Biol. 2007, 14:287-294.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 287-294
-
-
Long, D.1
-
37
-
-
22444437609
-
Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis
-
Zhao Y., Samal E., Srivastava D. Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis. Nature 2005, 436:214-220.
-
(2005)
Nature
, vol.436
, pp. 214-220
-
-
Zhao, Y.1
Samal, E.2
Srivastava, D.3
-
39
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M., Iovino N., Unnerstall U., Gaul U., Segal E. The role of site accessibility in microRNA target recognition. Nat. Genet. 2007, 39:1278-1284.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
40
-
-
84866952755
-
Selection on synonymous sites for increased accessibility around miRNA binding sites in plants
-
Gu W., Wang X., Zhai C., Xie X., Zhou T. Selection on synonymous sites for increased accessibility around miRNA binding sites in plants. Mol. Biol. Evol. 2012, 29:3037-3044.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 3037-3044
-
-
Gu, W.1
Wang, X.2
Zhai, C.3
Xie, X.4
Zhou, T.5
-
41
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker M., Stiegler P. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 1981, 9:133-148.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
42
-
-
79955379930
-
Vive la difference: biogenesis and evolution of microRNAs in plants and animals
-
Axtell M.J., Westholm J.O., Lai E.C. Vive la difference: biogenesis and evolution of microRNAs in plants and animals. Genome Biol. 2011, 12:221.
-
(2011)
Genome Biol.
, vol.12
, pp. 221
-
-
Axtell, M.J.1
Westholm, J.O.2
Lai, E.C.3
-
43
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
Brodersen P., et al. Widespread translational inhibition by plant miRNAs and siRNAs. Science 2008, 320:1185-1190.
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
-
44
-
-
68949115601
-
Biochemical evidence for translational repression by Arabidopsis microRNAs
-
Lanet E., et al. Biochemical evidence for translational repression by Arabidopsis microRNAs. Plant Cell 2009, 21:1762-1768.
-
(2009)
Plant Cell
, vol.21
, pp. 1762-1768
-
-
Lanet, E.1
-
45
-
-
78049445573
-
Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis
-
Zheng Q., et al. Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis. PLoS Genet. 2010, 6:e1001141.
-
(2010)
PLoS Genet.
, vol.6
-
-
Zheng, Q.1
-
46
-
-
77956306662
-
Genome-wide measurement of RNA secondary structure in yeast
-
Kertesz M., et al. Genome-wide measurement of RNA secondary structure in yeast. Nature 2010, 467:103-107.
-
(2010)
Nature
, vol.467
, pp. 103-107
-
-
Kertesz, M.1
-
47
-
-
78649690492
-
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
-
Underwood J.G., et al. FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing. Nat. Methods 2010, 7:995-1001.
-
(2010)
Nat. Methods
, vol.7
, pp. 995-1001
-
-
Underwood, J.G.1
-
48
-
-
79960571755
-
Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
-
Lucks J.B., et al. Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq). Proc. Natl. Acad. Sci. U.S.A. 2011, 108:11063-11068.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 11063-11068
-
-
Lucks, J.B.1
-
49
-
-
33646838978
-
A periodic pattern of mRNA secondary structure created by the genetic code
-
Shabalina S.A., Ogurtsov A.Y., Spiridonov N.A. A periodic pattern of mRNA secondary structure created by the genetic code. Nucleic Acids Res. 2006, 34:2428-2437.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2428-2437
-
-
Shabalina, S.A.1
Ogurtsov, A.Y.2
Spiridonov, N.A.3
-
50
-
-
0036464536
-
Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana
-
Lorkovic Z.J., Barta A. Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res. 2002, 30:623-635.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 623-635
-
-
Lorkovic, Z.J.1
Barta, A.2
-
51
-
-
63549135467
-
Role of plant RNA-binding proteins in development, stress response and genome organization
-
Lorkovic Z.J. Role of plant RNA-binding proteins in development, stress response and genome organization. Trends Plant Sci. 2009, 14:229-236.
-
(2009)
Trends Plant Sci.
, vol.14
, pp. 229-236
-
-
Lorkovic, Z.J.1
-
52
-
-
82155162650
-
Beyond transcription: RNA-binding proteins as emerging regulators of plant response to environmental constraints
-
Ambrosone A., Costa A., Leone A., Grillo S. Beyond transcription: RNA-binding proteins as emerging regulators of plant response to environmental constraints. Plant Sci. 2012, 182:12-18.
-
(2012)
Plant Sci.
, vol.182
, pp. 12-18
-
-
Ambrosone, A.1
Costa, A.2
Leone, A.3
Grillo, S.4
-
53
-
-
0035675137
-
A genome-wide survey of RS domain proteins
-
Boucher L., Ouzounis C.A., Enright A.J., Blencowe B.J. A genome-wide survey of RS domain proteins. RNA 2001, 7:1693-1701.
-
(2001)
RNA
, vol.7
, pp. 1693-1701
-
-
Boucher, L.1
Ouzounis, C.A.2
Enright, A.J.3
Blencowe, B.J.4
-
54
-
-
19944413670
-
Glycine-rich proteins: a class of novel proteins
-
Mousavi A., Hotta Y. Glycine-rich proteins: a class of novel proteins. Appl. Biochem. Biotechnol. 2005, 120:169-174.
-
(2005)
Appl. Biochem. Biotechnol.
, vol.120
, pp. 169-174
-
-
Mousavi, A.1
Hotta, Y.2
-
55
-
-
0034710226
-
The Drosophila melanogaster genome: translation factors and RNA binding proteins
-
Lasko P. The Drosophila melanogaster genome: translation factors and RNA binding proteins. J. Cell Biol. 2000, 150:F51-F56.
-
(2000)
J. Cell Biol.
, vol.150
-
-
Lasko, P.1
-
56
-
-
80053581878
-
RNA-binding proteins
-
WormBook, ed. The C. elegans Research Community
-
M.-H. Lee, T. Schedl, RNA-binding proteins, in: WormBook, ed. The C. elegans Research Community, 2006,. http://www.wormbook.org/.
-
(2006)
-
-
Lee, M.-H.1
Schedl, T.2
-
57
-
-
84861997955
-
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
-
Baltz A.G., et al. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell 2012, 46:674-690.
-
(2012)
Mol. Cell
, vol.46
, pp. 674-690
-
-
Baltz, A.G.1
-
58
-
-
0036289532
-
Eukaryotic mRNPs may represent posttranscriptional operons
-
Keene J.D., Tenenbaum S.A. Eukaryotic mRNPs may represent posttranscriptional operons. Mol. Cell 2002, 9:1161-1167.
-
(2002)
Mol. Cell
, vol.9
, pp. 1161-1167
-
-
Keene, J.D.1
Tenenbaum, S.A.2
-
59
-
-
0022520577
-
Heterogeneous nuclear ribonucleoproteins: role in RNA splicing
-
Choi Y.D., Grabowski P.J., Sharp P.A., Dreyfuss G. Heterogeneous nuclear ribonucleoproteins: role in RNA splicing. Science 1986, 231:1534-1539.
-
(1986)
Science
, vol.231
, pp. 1534-1539
-
-
Choi, Y.D.1
Grabowski, P.J.2
Sharp, P.A.3
Dreyfuss, G.4
-
60
-
-
0026716104
-
SR proteins: a conserved family of pre-mRNA splicing factors
-
Zahler A.M., Lane W.S., Stolk J.A., Roth M.B. SR proteins: a conserved family of pre-mRNA splicing factors. Genes Dev. 1992, 6:837-847.
-
(1992)
Genes Dev.
, vol.6
, pp. 837-847
-
-
Zahler, A.M.1
Lane, W.S.2
Stolk, J.A.3
Roth, M.B.4
-
61
-
-
0037266853
-
The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA
-
Staiger D., Zecca L., Wieczorek Kirk D.A., Apel K., Eckstein L. The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA. Plant J. 2003, 33:361-371.
-
(2003)
Plant J.
, vol.33
, pp. 361-371
-
-
Staiger, D.1
Zecca, L.2
Wieczorek Kirk, D.A.3
Apel, K.4
Eckstein, L.5
-
62
-
-
0033561378
-
AtSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes
-
Lopato S., et al. atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes. Genes Dev. 1999, 13:987-1001.
-
(1999)
Genes Dev.
, vol.13
, pp. 987-1001
-
-
Lopato, S.1
-
63
-
-
0036264995
-
UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants
-
Lambermon M.H., et al. UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants. Mol. Cell. Biol. 2002, 22:4346-4357.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 4346-4357
-
-
Lambermon, M.H.1
-
64
-
-
77954408142
-
The RNA binding protein Tudor-SN is essential for stress tolerance and stabilizes levels of stress-responsive mRNAs encoding secreted proteins in Arabidopsis
-
dit Frey N.F., et al. The RNA binding protein Tudor-SN is essential for stress tolerance and stabilizes levels of stress-responsive mRNAs encoding secreted proteins in Arabidopsis. Plant Cell 2010, 22:1575-1591.
-
(2010)
Plant Cell
, vol.22
, pp. 1575-1591
-
-
dit Frey, N.F.1
-
65
-
-
51249095587
-
Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death
-
Kim C.Y., Bove J., Assmann S.M. Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death. New Phytol. 2008, 180:57-70.
-
(2008)
New Phytol.
, vol.180
, pp. 57-70
-
-
Kim, C.Y.1
Bove, J.2
Assmann, S.M.3
-
66
-
-
0037102432
-
Modulation of an RNA-binding protein by abscisic-acid-activated protein kinase
-
Li J., et al. Modulation of an RNA-binding protein by abscisic-acid-activated protein kinase. Nature 2002, 418:793-797.
-
(2002)
Nature
, vol.418
, pp. 793-797
-
-
Li, J.1
-
67
-
-
80053318065
-
RNA-based regulation in the plant circadian clock
-
Staiger D., Green R. RNA-based regulation in the plant circadian clock. Trends Plant Sci. 2011, 16:517-523.
-
(2011)
Trends Plant Sci.
, vol.16
, pp. 517-523
-
-
Staiger, D.1
Green, R.2
-
68
-
-
57449111072
-
Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana
-
Branco-Price C., Kaiser K.A., Jang C.J., Larive C.K., Bailey-Serres J. Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. Plant J. 2008, 56:743-755.
-
(2008)
Plant J.
, vol.56
, pp. 743-755
-
-
Branco-Price, C.1
Kaiser, K.A.2
Jang, C.J.3
Larive, C.K.4
Bailey-Serres, J.5
-
69
-
-
84863641060
-
Post-transcriptional control of photosynthetic mRNA decay under stress conditions requires 3' and 5' untranslated regions and correlates with differential polysome association in rice
-
Park S.H., et al. Post-transcriptional control of photosynthetic mRNA decay under stress conditions requires 3' and 5' untranslated regions and correlates with differential polysome association in rice. Plant Physiol. 2012, 159:1111-1124.
-
(2012)
Plant Physiol.
, vol.159
, pp. 1111-1124
-
-
Park, S.H.1
-
70
-
-
34249064705
-
A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity
-
Fu Z.Q., et al. A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity. Nature 2007, 447:284-288.
-
(2007)
Nature
, vol.447
, pp. 284-288
-
-
Fu, Z.Q.1
-
71
-
-
83355169694
-
Structure function analysis of an ADP-ribosyltransferase type III effector and its RNA-binding target in plant immunity
-
Jeong B.R., et al. Structure function analysis of an ADP-ribosyltransferase type III effector and its RNA-binding target in plant immunity. J. Biol. Chem. 2011, 286:43272-43281.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 43272-43281
-
-
Jeong, B.R.1
-
72
-
-
33845420384
-
A putative Arabidopsis nucleoporin, AtNUP160, is critical for RNA export and required for plant tolerance to cold stress
-
Dong C.H., et al. A putative Arabidopsis nucleoporin, AtNUP160, is critical for RNA export and required for plant tolerance to cold stress. Mol. Cell. Biol. 2006, 26:9533-9543.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 9533-9543
-
-
Dong, C.H.1
-
73
-
-
77953009768
-
Glycine-rich RNA-binding proteins are functionally conserved in Arabidopsis thaliana and Oryza sativa during cold adaptation process
-
Kim J.Y., et al. Glycine-rich RNA-binding proteins are functionally conserved in Arabidopsis thaliana and Oryza sativa during cold adaptation process. J. Exp. Bot. 2010, 61:2317-2325.
-
(2010)
J. Exp. Bot.
, vol.61
, pp. 2317-2325
-
-
Kim, J.Y.1
-
74
-
-
33745765847
-
STABILIZED1 a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis
-
Lee B.H., Kapoor A., Zhu J., Zhu J.K. STABILIZED1 a stress-upregulated nuclear protein, is required for pre-mRNA splicing, mRNA turnover, and stress tolerance in Arabidopsis. Plant Cell 2006, 18:1736-1749.
-
(2006)
Plant Cell
, vol.18
, pp. 1736-1749
-
-
Lee, B.H.1
Kapoor, A.2
Zhu, J.3
Zhu, J.K.4
-
75
-
-
33745930546
-
Arabidopsis RNA-binding protein UBA2a relocalizes into nuclear speckles in response to abscisic acid
-
Riera M., Redko Y., Leung J. Arabidopsis RNA-binding protein UBA2a relocalizes into nuclear speckles in response to abscisic acid. FEBS Lett. 2006, 580:4160-4165.
-
(2006)
FEBS Lett.
, vol.580
, pp. 4160-4165
-
-
Riera, M.1
Redko, Y.2
Leung, J.3
-
76
-
-
0035654544
-
Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis
-
Xiong L., et al. Modulation of abscisic acid signal transduction and biosynthesis by an Sm-like protein in Arabidopsis. Dev. Cell 2001, 1:771-781.
-
(2001)
Dev. Cell
, vol.1
, pp. 771-781
-
-
Xiong, L.1
-
77
-
-
42949109848
-
The splicing factor SF2/ASF regulates translation initiation by enhancing phosphorylation of 4E-BP1
-
Michlewski G., Sanford J.R., Caceres J.F. The splicing factor SF2/ASF regulates translation initiation by enhancing phosphorylation of 4E-BP1. Mol. Cell 2008, 30:179-189.
-
(2008)
Mol. Cell
, vol.30
, pp. 179-189
-
-
Michlewski, G.1
Sanford, J.R.2
Caceres, J.F.3
-
78
-
-
77950357450
-
A splicing-independent function of SF2/ASF in microRNA processing
-
Wu H., et al. A splicing-independent function of SF2/ASF in microRNA processing. Mol. Cell 2010, 38:67-77.
-
(2010)
Mol. Cell
, vol.38
, pp. 67-77
-
-
Wu, H.1
-
79
-
-
58749102066
-
Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis
-
Schoning J.C., Streitner C., Meyer I.M., Gao Y., Staiger D. Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis. Nucleic Acids Res. 2008, 36:6977-6987.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6977-6987
-
-
Schoning, J.C.1
Streitner, C.2
Meyer, I.M.3
Gao, Y.4
Staiger, D.5
-
80
-
-
78649550144
-
Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control
-
Stauffer E., Westermann A., Wagner G., Wachter A. Polypyrimidine tract-binding protein homologues from Arabidopsis underlie regulatory circuits based on alternative splicing and downstream control. Plant J. 2010, 64:243-255.
-
(2010)
Plant J.
, vol.64
, pp. 243-255
-
-
Stauffer, E.1
Westermann, A.2
Wagner, G.3
Wachter, A.4
-
81
-
-
54949148332
-
Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
-
Hogan D.J., Riordan D.P., Gerber A.P., Herschlag D., Brown P.O. Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 2008, 6:e255.
-
(2008)
PLoS Biol.
, vol.6
-
-
Hogan, D.J.1
Riordan, D.P.2
Gerber, A.P.3
Herschlag, D.4
Brown, P.O.5
-
82
-
-
73949131510
-
Genome-wide analysis of RNA-protein interactions in plants
-
Barkan A. Genome-wide analysis of RNA-protein interactions in plants. Methods Mol. Biol. 2009, 553:13-37.
-
(2009)
Methods Mol. Biol.
, vol.553
, pp. 13-37
-
-
Barkan, A.1
-
83
-
-
84871195123
-
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana
-
Streitner C., Koster T., Simpson C.G., Shaw P., Danisman S., Brown J.W., Staiger D. An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Res. 2012, 40:11240-11255.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 11240-11255
-
-
Streitner, C.1
Koster, T.2
Simpson, C.G.3
Shaw, P.4
Danisman, S.5
Brown, J.W.6
Staiger, D.7
-
84
-
-
77952546929
-
Isolation and identification of cytoskeleton-associated prolamine mRNA binding proteins from developing rice seeds
-
Crofts A.J., Crofts N., Whitelegge J.P., Okita T.W. Isolation and identification of cytoskeleton-associated prolamine mRNA binding proteins from developing rice seeds. Planta 2010, 231:1261-1276.
-
(2010)
Planta
, vol.231
, pp. 1261-1276
-
-
Crofts, A.J.1
Crofts, N.2
Whitelegge, J.P.3
Okita, T.W.4
-
85
-
-
27944508215
-
CLIP: a method for identifying protein-RNA interaction sites in living cells
-
Ule J., Jensen K., Mele A., Darnell R.B. CLIP: a method for identifying protein-RNA interaction sites in living cells. Methods 2005, 37:376-386.
-
(2005)
Methods
, vol.37
, pp. 376-386
-
-
Ule, J.1
Jensen, K.2
Mele, A.3
Darnell, R.B.4
-
86
-
-
84870026823
-
Genome-wide identification of miRNA targets by PAR-CLIP
-
Hafner M., Lianoglou S., Tuschl T., Betel D. Genome-wide identification of miRNA targets by PAR-CLIP. Methods 2012, 58:94-105.
-
(2012)
Methods
, vol.58
, pp. 94-105
-
-
Hafner, M.1
Lianoglou, S.2
Tuschl, T.3
Betel, D.4
-
87
-
-
80455179726
-
ICLIP-transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution
-
Konig J., et al. iCLIP-transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution. J. Vis. Exp. 2011, 30:2638.
-
(2011)
J. Vis. Exp.
, vol.30
, pp. 2638
-
-
Konig, J.1
-
88
-
-
0242497663
-
CLIP identifies Nova-regulated RNA networks in the brain
-
Ule J., et al. CLIP identifies Nova-regulated RNA networks in the brain. Science 2003, 302:1212-1215.
-
(2003)
Science
, vol.302
, pp. 1212-1215
-
-
Ule, J.1
-
89
-
-
84861161751
-
Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins
-
Huelga S.C., et al. Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins. Cell Rep. 2012, 1:167-178.
-
(2012)
Cell Rep.
, vol.1
, pp. 167-178
-
-
Huelga, S.C.1
-
90
-
-
61849139645
-
Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts
-
Sanford J.R., et al. Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts. Genome Res. 2009, 19:381-394.
-
(2009)
Genome Res.
, vol.19
, pp. 381-394
-
-
Sanford, J.R.1
-
91
-
-
79960779323
-
FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism
-
Darnell J.C., et al. FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism. Cell 2011, 146:247-261.
-
(2011)
Cell
, vol.146
, pp. 247-261
-
-
Darnell, J.C.1
-
92
-
-
16544392851
-
Crosslinking of ribosomal proteins to RNA in maize ribosomes by UV-B and its effects on translation
-
Casati P., Walbot V. Crosslinking of ribosomal proteins to RNA in maize ribosomes by UV-B and its effects on translation. Plant Physiol. 2004, 136:3319-3332.
-
(2004)
Plant Physiol.
, vol.136
, pp. 3319-3332
-
-
Casati, P.1
Walbot, V.2
-
93
-
-
0033740021
-
RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells
-
Lorkovic Z.J., Wieczorek Kirk D.A., Klahre U., Hemmings-Mieszczak M., Filipowicz W. RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. RNA 2000, 6:1610-1624.
-
(2000)
RNA
, vol.6
, pp. 1610-1624
-
-
Lorkovic, Z.J.1
Wieczorek Kirk, D.A.2
Klahre, U.3
Hemmings-Mieszczak, M.4
Filipowicz, W.5
-
94
-
-
84874441112
-
RiceRBP: a resource for experimentally identified RNA binding proteins in Oryza sativa
-
Doroshenk K.A., Crofts A.J., Morris R.T., Wyrick J.J., Okita T.W. RiceRBP: a resource for experimentally identified RNA binding proteins in Oryza sativa. Front. Plant Sci. 2012, 3:90.
-
(2012)
Front. Plant Sci.
, vol.3
, pp. 90
-
-
Doroshenk, K.A.1
Crofts, A.J.2
Morris, R.T.3
Wyrick, J.J.4
Okita, T.W.5
-
95
-
-
77950903733
-
A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8
-
Schmidt F., et al. A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8. Mol. Biol. Rep. 2010, 37:839-845.
-
(2010)
Mol. Biol. Rep.
, vol.37
, pp. 839-845
-
-
Schmidt, F.1
-
96
-
-
37749036789
-
Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles
-
Delannoy E., Stanley W.A., Bond C.S., Small I.D. Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles. Biochem. Soc. Trans. 2007, 35:1643-1647.
-
(2007)
Biochem. Soc. Trans.
, vol.35
, pp. 1643-1647
-
-
Delannoy, E.1
Stanley, W.A.2
Bond, C.S.3
Small, I.D.4
-
97
-
-
44649133995
-
On the expansion of the pentatricopeptide repeat gene family in plants
-
O'Toole N., et al. On the expansion of the pentatricopeptide repeat gene family in plants. Mol. Biol. Evol. 2008, 25:1120-1128.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1120-1128
-
-
O'Toole, N.1
-
98
-
-
0026740718
-
Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box
-
Kiledjian M., Dreyfuss G. Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box. EMBO J. 1992, 11:2655-2664.
-
(1992)
EMBO J.
, vol.11
, pp. 2655-2664
-
-
Kiledjian, M.1
Dreyfuss, G.2
-
99
-
-
0028129989
-
Conserved structures and diversity of functions of RNA-binding proteins
-
Burd C.G., Dreyfuss G. Conserved structures and diversity of functions of RNA-binding proteins. Science 1994, 265:615-621.
-
(1994)
Science
, vol.265
, pp. 615-621
-
-
Burd, C.G.1
Dreyfuss, G.2
|