메뉴 건너뛰기




Volumn 6, Issue 4, 2010, Pages

Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H2AZ; SCATTER FACTOR RECEPTOR; GROWTH FACTOR RECEPTOR; MET PROTEIN, HUMAN;

EID: 77952414230     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000917     Document Type: Article
Times cited : (241)

References (45)
  • 1
    • 0024272160 scopus 로고
    • Hypomethylation of ornithine decarboxylase gene and erb-A1 oncogene in human chronic lymphatic leukemia
    • Lipsanen V, Leinonen P, Alhonen L, Janne J (1988) Hypomethylation of ornithine decarboxylase gene and erb-A1 oncogene in human chronic lymphatic leukemia. Blood 72: 2042-2044.
    • (1988) Blood , vol.72 , pp. 2042-2044
    • Lipsanen, V.1    Leinonen, P.2    Alhonen, L.3    Janne, J.4
  • 2
    • 0027239823 scopus 로고
    • Bcl-2 gene hypomethylation and high-level expression in B-cell chronic lymphocytic leukemia
    • Hanada M, Delia D, Aiello A, Stadtmauer E, Reed JC (1993) bcl-2 gene hypomethylation and high-level expression in B-cell chronic lymphocytic leukemia. Blood 82: 1820-1828.
    • (1993) Blood , vol.82 , pp. 1820-1828
    • Hanada, M.1    Delia, D.2    Aiello, A.3    Stadtmauer, E.4    Reed, J.C.5
  • 5
    • 0242584454 scopus 로고    scopus 로고
    • Chromosomal instability and tumors promoted by DNA hypomethylation
    • Eden A, Gaudet F, Waghmare A, Jaenisch R (2003) Chromosomal instability and tumors promoted by DNA hypomethylation. Science 300: 455.
    • (2003) Science , vol.300 , pp. 455
    • Eden, A.1    Gaudet, F.2    Waghmare, A.3    Jaenisch, R.4
  • 6
    • 0043093697 scopus 로고    scopus 로고
    • Transposable elements: Targets for early nutritional effects on epigenetic gene regulation
    • Waterland RA, Jirtle RL (2003) Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol 23: 5293-5300.
    • (2003) Mol Cell Biol , vol.23 , pp. 5293-5300
    • Waterland, R.A.1    Jirtle, R.L.2
  • 7
    • 67349173665 scopus 로고    scopus 로고
    • The regulated retrotransposon transcriptome of mammalian cells
    • Faulkner GJ, Kimura Y, Daub CO, Wani S, Plessy C, et al. (2009) The regulated retrotransposon transcriptome of mammalian cells. Nat Genet 41: 563-571.
    • (2009) Nat Genet , vol.41 , pp. 563-571
    • Faulkner, G.J.1    Kimura, Y.2    Daub, C.O.3    Wani, S.4    Plessy, C.5
  • 8
    • 33746658129 scopus 로고    scopus 로고
    • L1 antisense promoter drives tissue-specific transcription of human genes
    • Matlik K, Redik K, Speek M (2006) L1 antisense promoter drives tissue-specific transcription of human genes. J Biomed Biotechnol 2006: 71753.
    • (2006) J Biomed Biotechnol , vol.2006 , pp. 71753
    • Matlik, K.1    Redik, K.2    Speek, M.3
  • 9
    • 0036251775 scopus 로고    scopus 로고
    • Many human genes are transcribed from the antisense promoter of L1 retrotransposon
    • Nigumann P, Redik K, Matlik K, Speek M (2002) Many human genes are transcribed from the antisense promoter of L1 retrotransposon. Genomics 79: 628-634.
    • (2002) Genomics , vol.79 , pp. 628-634
    • Nigumann, P.1    Redik, K.2    Matlik, K.3    Speek, M.4
  • 10
    • 0034999474 scopus 로고    scopus 로고
    • Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes
    • Speek M (2001) Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Mol Cell Biol 21: 1973-1985.
    • (2001) Mol Cell Biol , vol.21 , pp. 1973-1985
    • Speek, M.1
  • 11
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • Jones PA, Baylin SB (2002) The fundamental role of epigenetic events in cancer. Nat Rev Genet 3: 415-428.
    • (2002) Nat Rev Genet , vol.3 , pp. 415-428
    • Jones, P.A.1    Baylin, S.B.2
  • 12
    • 55549141877 scopus 로고    scopus 로고
    • Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
    • Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S (2008) Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature 456: 125-129.
    • (2008) Nature , vol.456 , pp. 125-129
    • Zilberman, D.1    Coleman-Derr, D.2    Ballinger, T.3    Henikoff, S.4
  • 13
    • 9944233064 scopus 로고    scopus 로고
    • Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis
    • Chalitchagorn K, Shuangshoti S, Hourpai N, Kongruttanachok N, Tangkijvanich P, et al. (2004) Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis. Oncogene 23: 8841-8846.
    • (2004) Oncogene , vol.23 , pp. 8841-8846
    • Chalitchagorn, K.1    Shuangshoti, S.2    Hourpai, N.3    Kongruttanachok, N.4    Tangkijvanich, P.5
  • 14
    • 27944504788 scopus 로고    scopus 로고
    • Promoter hypomethylation of the LINE-1 retrotransposable elements activates sense/antisense transcription and marks the progression of chronic myeloid leukemia
    • Roman-Gomez J, Jimenez-Velasco A, Agirre X, Cervantes F, Sanchez J, et al. (2005) Promoter hypomethylation of the LINE-1 retrotransposable elements activates sense/antisense transcription and marks the progression of chronic myeloid leukemia. Oncogene 24: 7213-7223.
    • (2005) Oncogene , vol.24 , pp. 7213-7223
    • Roman-Gomez, J.1    Jimenez-Velasco, A.2    Agirre, X.3    Cervantes, F.4    Sanchez, J.5
  • 16
  • 18
    • 0031770251 scopus 로고    scopus 로고
    • Differential expression of hepatocyte growth factor in papillary and nodular tumors of the bladder
    • Li B, Kanamaru H, Noriki S, Fukuda M, Okada K (1998) Differential expression of hepatocyte growth factor in papillary and nodular tumors of the bladder. Int J Urol 5: 436-440.
    • (1998) Int J Urol , vol.5 , pp. 436-440
    • Li, B.1    Kanamaru, H.2    Noriki, S.3    Fukuda, M.4    Okada, K.5
  • 19
    • 0033901252 scopus 로고    scopus 로고
    • Overexpression of the hepatocyte growth factor (HGF) receptor (Met) and presence of a truncated and activated intracellular HGF receptor fragment in locally aggressive/malignant human musculoskeletal tumors
    • Wallenius V, Hisaoka M, Helou K, Levan G, Mandahl N, et al. (2000) Overexpression of the hepatocyte growth factor (HGF) receptor (Met) and presence of a truncated and activated intracellular HGF receptor fragment in locally aggressive/malignant human musculoskeletal tumors. Am J Pathol 156: 821-829.
    • (2000) Am J Pathol , vol.156 , pp. 821-829
    • Wallenius, V.1    Hisaoka, M.2    Helou, K.3    Levan, G.4    Mandahl, N.5
  • 21
    • 0034807848 scopus 로고    scopus 로고
    • The immortalized UROtsa cell line as a potential cell culture model of human urothelium
    • Rossi MR, Masters JR, Park S, Todd JH, Garrett SH, et al. (2001) The immortalized UROtsa cell line as a potential cell culture model of human urothelium. Environ Health Perspect 109: 801-808.
    • (2001) Environ Health Perspect , vol.109 , pp. 801-808
    • Rossi, M.R.1    Masters, J.R.2    Park, S.3    Todd, J.H.4    Garrett, S.H.5
  • 22
    • 33747358598 scopus 로고    scopus 로고
    • Expression of hTERT immortalises normal human urothelial cells without inactivation of the p16/Rb pathway
    • Chapman EJ, Hurst CD, Pitt E, Chambers P, Aveyard JS, et al. (2006) Expression of hTERT immortalises normal human urothelial cells without inactivation of the p16/Rb pathway. Oncogene 25: 5037-5045.
    • (2006) Oncogene , vol.25 , pp. 5037-5045
    • Chapman, E.J.1    Hurst, C.D.2    Pitt, E.3    Chambers, P.4    Aveyard, J.S.5
  • 23
    • 3142618508 scopus 로고    scopus 로고
    • Activin receptor-like kinase-7 induces apoptosis through activation of MAPKs in a Smad3-dependent mechanism in hepatoma cells
    • Kim BC, van Gelder H, Kim TA, Lee HJ, Baik KG, et al. (2004) Activin receptor-like kinase-7 induces apoptosis through activation of MAPKs in a Smad3-dependent mechanism in hepatoma cells. J Biol Chem 279: 28458-28465.
    • (2004) J Biol Chem , vol.279 , pp. 28458-28465
    • Kim, B.C.1    van Gelder, H.2    Kim, T.A.3    Lee, H.J.4    Baik, K.G.5
  • 24
    • 38449102144 scopus 로고    scopus 로고
    • Functional analysis of promoter CpG methylation using a CpG-free luciferase reporter vector
    • Klug M, Rehli M (2006) Functional analysis of promoter CpG methylation using a CpG-free luciferase reporter vector. Epigenetics 1: 127-130.
    • (2006) Epigenetics , vol.1 , pp. 127-130
    • Klug, M.1    Rehli, M.2
  • 25
    • 15444372817 scopus 로고    scopus 로고
    • The profile of repeat-associated histone lysine methylation states in the mouse epigenome
    • Martens JH, O'Sullivan RJ, Braunschweig U, Opravil S, Radolf M, et al. (2005) The profile of repeat-associated histone lysine methylation states in the mouse epigenome. Embo J 24: 800-812.
    • (2005) Embo J , vol.24 , pp. 800-812
    • Martens, J.H.1    O'Sullivan, R.J.2    Braunschweig, U.3    Opravil, S.4    Radolf, M.5
  • 26
    • 2442454683 scopus 로고    scopus 로고
    • Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome
    • Liang G, Lin JC, Wei V, Yoo C, Cheng JC, et al. (2004) Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome. Proc Natl Acad Sci U S A 101: 7357-7362.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 7357-7362
    • Liang, G.1    Lin, J.C.2    Wei, V.3    Yoo, C.4    Cheng, J.C.5
  • 27
    • 35748936148 scopus 로고    scopus 로고
    • Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island
    • Lin JC, Jeong S, Liang G, Takai D, Fatemi M, et al. (2007) Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island. Cancer Cell 12: 432-444.
    • (2007) Cancer Cell , vol.12 , pp. 432-444
    • Lin, J.C.1    Jeong, S.2    Liang, G.3    Takai, D.4    Fatemi, M.5
  • 28
    • 29144435153 scopus 로고    scopus 로고
    • Footprinting of mammalian promoters: Use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level
    • Fatemi M, Pao MM, Jeong S, Gal-Yam EN, Egger G, et al. (2005) Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level. Nucleic Acids Res 33: e176.
    • (2005) Nucleic Acids Res , vol.33
    • Fatemi, M.1    Pao, M.M.2    Jeong, S.3    Gal-Yam, E.N.4    Egger, G.5
  • 29
    • 0032169570 scopus 로고    scopus 로고
    • Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC
    • Xu M, Kladde MP, Van Etten JL, Simpson RT (1998) Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC. Nucleic Acids Res 26: 3961-3966.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3961-3966
    • Xu, M.1    Kladde, M.P.2    van Etten, J.L.3    Simpson, R.T.4
  • 30
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: Advances through genomics
    • Jiang C, Pugh BF (2009) Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Genet 10: 161-172.
    • (2009) Nat Rev Genet , vol.10 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2
  • 31
    • 18344390653 scopus 로고    scopus 로고
    • DNMT1 and DNMT3b cooperate to silence genes in human cancer cells
    • Rhee I, Bachman KE, Park BH, Jair KW, Yen RW, et al. (2002) DNMT1 and DNMT3b cooperate to silence genes in human cancer cells. Nature 416: 552-556.
    • (2002) Nature , vol.416 , pp. 552-556
    • Rhee, I.1    Bachman, K.E.2    Park, B.H.3    Jair, K.W.4    Yen, R.W.5
  • 32
    • 33748998743 scopus 로고    scopus 로고
    • Identification of DNMT1 (DNA methyltransferase 1) hypomorphs in somatic knockouts suggests an essential role for DNMT1 in cell survival
    • Egger G, Jeong S, Escobar SG, Cortez CC, Li TW, et al. (2006) Identification of DNMT1 (DNA methyltransferase 1) hypomorphs in somatic knockouts suggests an essential role for DNMT1 in cell survival. Proc Natl Acad Sci U S A 103: 14080-14085.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 14080-14085
    • Egger, G.1    Jeong, S.2    Escobar, S.G.3    Cortez, C.C.4    Li, T.W.5
  • 33
    • 70349322609 scopus 로고    scopus 로고
    • Selective Anchoring of DNA Methyltransferases 3A/3B to Nucleosomes Containing Methylated DNA
    • Jeong S, Liang G, Sharma S, Lin JC, Choi SH, et al. (2009) Selective Anchoring of DNA Methyltransferases 3A/3B to Nucleosomes Containing Methylated DNA. Mol Cell Biol.
    • (2009) Mol Cell Biol
    • Jeong, S.1    Liang, G.2    Sharma, S.3    Lin, J.C.4    Choi, S.H.5
  • 34
    • 0032987773 scopus 로고    scopus 로고
    • DNA methylation and expression of LINE-1 and HERV-K provirus sequences in urothelial and renal cell carcinomas
    • Florl AR, Lower R, Schmitz-Drager BJ, Schulz WA (1999) DNA methylation and expression of LINE-1 and HERV-K provirus sequences in urothelial and renal cell carcinomas. Br J Cancer 80: 1312-1321.
    • (1999) Br J Cancer , vol.80 , pp. 1312-1321
    • Florl, A.R.1    Lower, R.2    Schmitz-Drager, B.J.3    Schulz, W.A.4
  • 35
    • 67650067284 scopus 로고    scopus 로고
    • Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer
    • Choi SH, Worswick S, Byun HM, Shear T, Soussa JC, et al. (2009) Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer. Int J Cancer 125: 723-729.
    • (2009) Int J Cancer , vol.125 , pp. 723-729
    • Choi, S.H.1    Worswick, S.2    Byun, H.M.3    Shear, T.4    Soussa, J.C.5
  • 36
    • 9344235475 scopus 로고    scopus 로고
    • Detection of methylated apoptosis-associated genes in urine sediments of bladder cancer patients
    • Friedrich MG, Weisenberger DJ, Cheng JC, Chandrasoma S, Siegmund KD, et al. (2004) Detection of methylated apoptosis-associated genes in urine sediments of bladder cancer patients. Clin Cancer Res 10: 7457-7465.
    • (2004) Clin Cancer Res , vol.10 , pp. 7457-7465
    • Friedrich, M.G.1    Weisenberger, D.J.2    Cheng, J.C.3    Chandrasoma, S.4    Siegmund, K.D.5
  • 37
    • 21844436803 scopus 로고    scopus 로고
    • X-ray structure of a tetranucleosome and its implications for the chromatin fibre
    • Schalch T, Duda S, Sargent DF, Richmond TJ (2005) X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature 436: 138-141.
    • (2005) Nature , vol.436 , pp. 138-141
    • Schalch, T.1    Duda, S.2    Sargent, D.F.3    Richmond, T.J.4
  • 38
    • 33845333815 scopus 로고    scopus 로고
    • Mapping geographic zones of cancer risk with epigenetic biomarkers in normal breast tissue
    • Yan PS, Venkataramu C, Ibrahim A, Liu JC, Shen RZ, et al. (2006) Mapping geographic zones of cancer risk with epigenetic biomarkers in normal breast tissue. Clin Cancer Res 12: 6626-6636.
    • (2006) Clin Cancer Res , vol.12 , pp. 6626-6636
    • Yan, P.S.1    Venkataramu, C.2    Ibrahim, A.3    Liu, J.C.4    Shen, R.Z.5
  • 39
    • 0034665332 scopus 로고    scopus 로고
    • Fields of aberrant CpG island hypermethylation in Barrett's esophagus and associated adenocarcinoma
    • Eads CA, Lord RV, Kurumboor SK, Wickramasinghe K, Skinner ML, et al. (2000) Fields of aberrant CpG island hypermethylation in Barrett's esophagus and associated adenocarcinoma. Cancer Res 60: 5021-5026.
    • (2000) Cancer Res , vol.60 , pp. 5021-5026
    • Eads, C.A.1    Lord, R.V.2    Kurumboor, S.K.3    Wickramasinghe, K.4    Skinner, M.L.5
  • 40
    • 25144518262 scopus 로고    scopus 로고
    • MGMT promoter methylation and field defect in sporadic colorectal cancer
    • Shen L, Kondo Y, Rosner GL, Xiao L, Hernandez NS, et al. (2005) MGMT promoter methylation and field defect in sporadic colorectal cancer. J Natl Cancer Inst 97: 1330-1338.
    • (2005) J Natl Cancer Inst , vol.97 , pp. 1330-1338
    • Shen, L.1    Kondo, Y.2    Rosner, G.L.3    Xiao, L.4    Hernandez, N.S.5
  • 41
    • 1242285594 scopus 로고    scopus 로고
    • Hypomethylation of L1 retrotransposons in colorectal cancer and adjacent normal tissue
    • Suter CM, Martin DI, Ward RL (2004) Hypomethylation of L1 retrotransposons in colorectal cancer and adjacent normal tissue. Int J Colorectal Dis 19: 95-101.
    • (2004) Int J Colorectal Dis , vol.19 , pp. 95-101
    • Suter, C.M.1    Martin, D.I.2    Ward, R.L.3
  • 43
    • 40949160813 scopus 로고    scopus 로고
    • Genomic DNA hypomethylation as a biomarker for bladder cancer susceptibility in the Spanish Bladder Cancer Study: A case-control study
    • Moore LE, Pfeiffer RM, Poscablo C, Real FX, Kogevinas M, et al. (2008) Genomic DNA hypomethylation as a biomarker for bladder cancer susceptibility in the Spanish Bladder Cancer Study: a case-control study. Lancet Oncol 9: 359-366.
    • (2008) Lancet Oncol , vol.9 , pp. 359-366
    • Moore, L.E.1    Pfeiffer, R.M.2    Poscablo, C.3    Real, F.X.4    Kogevinas, M.5
  • 44
    • 34548188589 scopus 로고    scopus 로고
    • Methylation-sensitive single-nucleotide primer extension (Ms-SNuPE) for quantitative measurement of DNA methylation
    • Gonzalgo ML, Liang G (2007) Methylation-sensitive single-nucleotide primer extension (Ms-SNuPE) for quantitative measurement of DNA methylation. Nat Protoc 2: 1931-1936.
    • (2007) Nat Protoc , vol.2 , pp. 1931-1936
    • Gonzalgo, M.L.1    Liang, G.2
  • 45
    • 33847026146 scopus 로고    scopus 로고
    • Changes in DNA methylation patterns in subjects exposed to low-dose benzene
    • Bollati V, Baccarelli A, Hou L, Bonzini M, Fustinoni S, et al. (2007) Changes in DNA methylation patterns in subjects exposed to low-dose benzene. Cancer Res 67: 876-880.
    • (2007) Cancer Res , vol.67 , pp. 876-880
    • Bollati, V.1    Baccarelli, A.2    Hou, L.3    Bonzini, M.4    Fustinoni, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.