-
1
-
-
0036851876
-
Platelets in artherothrombosis
-
Ruggeri, Z. M., Platelets in artherothrombosis. Nat. Med. 2002, 8, 1227-1234.
-
(2002)
Nat. Med.
, vol.8
, pp. 1227-1234
-
-
Ruggeri, Z.M.1
-
2
-
-
4444260266
-
Platelet adhesion signalling and the regulation of thrombus formation
-
Gibbins, J. M., Platelet adhesion signalling and the regulation of thrombus formation. J. Cell Sci. 2004, 117, 3415-3425.
-
(2004)
J. Cell Sci.
, vol.117
, pp. 3415-3425
-
-
Gibbins, J.M.1
-
3
-
-
0035918228
-
Expression of the platelet receptor GPVI confers signalling via the Fc receptor gamma chain in response to the snake venom convulxin but not to collagen
-
Zheng, Y. M., Lui, C., Chen, H., Locke, D. et al., Expression of the platelet receptor GPVI confers signalling via the Fc receptor gamma chain in response to the snake venom convulxin but not to collagen. J. Biol. Chem. 2001, 276, 12999-13006.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 12999-13006
-
-
Zheng, Y.M.1
Lui, C.2
Chen, H.3
Locke, D.4
-
4
-
-
0038494921
-
Platelet-collagen interactions: is GPVI the central receptor?
-
Nieswandt, B., Watson, S. P., Platelet-collagen interactions: is GPVI the central receptor? Blood 2003, 102, 449-461.
-
(2003)
Blood
, vol.102
, pp. 449-461
-
-
Nieswandt, B.1
Watson, S.P.2
-
5
-
-
0031916728
-
Molecular basis for ADP-induced platelet activation. II. The P2Y1 receptor mediates ADP-induced intracellular calcium mobilization and shape change in platelets
-
Jin, J., Daniel, J. L., Kunapuli, S. P., Molecular basis for ADP-induced platelet activation. II. The P2Y1 receptor mediates ADP-induced intracellular calcium mobilization and shape change in platelets. J. Biol. Chem. 1998, 273, 2030-2034.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 2030-2034
-
-
Jin, J.1
Daniel, J.L.2
Kunapuli, S.P.3
-
6
-
-
0031967093
-
ATP derivatives are antagonists of the P2Y1 receptor: similarities with the platelet ADP receptor
-
Hechler, B., Vigne, P., Léon, C., Breittmayer, J. P. et al., ATP derivatives are antagonists of the P2Y1 receptor: similarities with the platelet ADP receptor. Mol. Pharmacol. 1998, 53, 727-733.
-
(1998)
Mol. Pharmacol.
, vol.53
, pp. 727-733
-
-
Hechler, B.1
Vigne, P.2
Léon, C.3
Breittmayer, J.P.4
-
7
-
-
0033559805
-
Protease-activated receptors 1 and 4 mediate activation of human platelets by thrombin
-
Kahn, M. L., Nakanishi-Matsui, M., Shapiro, M. J., Ishihara, H. et al., Protease-activated receptors 1 and 4 mediate activation of human platelets by thrombin. J. Clin. Invest. 1999, 103, 879-887.
-
(1999)
J. Clin. Invest.
, vol.103
, pp. 879-887
-
-
Kahn, M.L.1
Nakanishi-Matsui, M.2
Shapiro, M.J.3
Ishihara, H.4
-
8
-
-
0039483335
-
Molecular basis of blood coagulation
-
in: Hoffman, R., Benz, E. J., Shattil, S. J., Furie, B., Cohen, H. J., Silberstein, L. E., McGlave, P. (Eds.), Churchill Livingstone, NY .
-
Furie, B., Furie, B. C., Molecular basis of blood coagulation, in: Hoffman, R., Benz, E. J., Shattil, S. J., Furie, B., Cohen, H. J., Silberstein, L. E., McGlave, P. (Eds.), Haematology: Basic Principles and Practice, Churchill Livingstone, NY 2000.
-
(2000)
Haematology: Basic Principles and Practice
-
-
Furie, B.1
Furie, B.C.2
-
9
-
-
33749635803
-
global proteomics approach identifies novel phosphorylated signalling proteins in GPVI-activated platelets: involvement of G6f, a novel platelet Grb2-binding membrane adapter
-
Garcia, A., Senis, Y. A., Antrobus, R., Hughes, C. E. et al., global proteomics approach identifies novel phosphorylated signalling proteins in GPVI-activated platelets: involvement of G6f, a novel platelet Grb2-binding membrane adapter. Proteomics 2006, 6, 5332-5343.
-
(2006)
Proteomics
, vol.6
, pp. 5332-5343
-
-
Garcia, A.1
Senis, Y.A.2
Antrobus, R.3
Hughes, C.E.4
-
10
-
-
34147183885
-
A comprehensive proteomics and genomics analysis reveals novel transmembrane proteins in human platelets and mouse megakaryocytes including G6b-B, a novel immunoreceptor tyrosine-based inhibitory motif protein
-
Senis, Y. A., Tomlinson, M. G., Garcia, A., Dumon, S. et al., A comprehensive proteomics and genomics analysis reveals novel transmembrane proteins in human platelets and mouse megakaryocytes including G6b-B, a novel immunoreceptor tyrosine-based inhibitory motif protein. Mol. Cell Proteomics 2007, 6, 548-564.
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 548-564
-
-
Senis, Y.A.1
Tomlinson, M.G.2
Garcia, A.3
Dumon, S.4
-
11
-
-
66549093856
-
The tyrosine phosphatase CD148 is an essential positive regulator of platelet activation and thrombosis
-
Senis, Y. A., Tomlinson, M. G., Ellison, S., Mazharian, A. et al., The tyrosine phosphatase CD148 is an essential positive regulator of platelet activation and thrombosis. Blood 2009, 113, 4942-4954.
-
(2009)
Blood
, vol.113
, pp. 4942-4954
-
-
Senis, Y.A.1
Tomlinson, M.G.2
Ellison, S.3
Mazharian, A.4
-
12
-
-
67049125717
-
A functional proteomic method for the enrichment of peripheral membrane proteins reveals the collagen binding protein Hsp47 is exposed on the surface of activated human platelets
-
Kaiser, W. J., Holbrook, L. M., Tucker, K. L., Stanley, R. G. et al., A functional proteomic method for the enrichment of peripheral membrane proteins reveals the collagen binding protein Hsp47 is exposed on the surface of activated human platelets. J. Proteome Res. 2009, 8, 2903-2914.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 2903-2914
-
-
Kaiser, W.J.1
Holbrook, L.M.2
Tucker, K.L.3
Stanley, R.G.4
-
13
-
-
70349125020
-
Proteomic analysis of resting and thrombin-stimulated platelets reveals the translocation and functional relevance of HIP-55 in platelets
-
Tucker, K. L., Kaiser, W. J., Bergeron, A. L., Hu, H. et al., Proteomic analysis of resting and thrombin-stimulated platelets reveals the translocation and functional relevance of HIP-55 in platelets. Proteomics 2009, 9, 4340-4354.
-
(2009)
Proteomics
, vol.9
, pp. 4340-4354
-
-
Tucker, K.L.1
Kaiser, W.J.2
Bergeron, A.L.3
Hu, H.4
-
14
-
-
12144289394
-
Differential proteome analysis of TRAP-activated platelets: involvement of DOK-2 and phosphorylation of RGS proteins
-
Garcia, A., Prabhakar, S., Hughan, S., Anderson, T. W. et al., Differential proteome analysis of TRAP-activated platelets: involvement of DOK-2 and phosphorylation of RGS proteins. Blood 2004, 103, 2088-2095.
-
(2004)
Blood
, vol.103
, pp. 2088-2095
-
-
Garcia, A.1
Prabhakar, S.2
Hughan, S.3
Anderson, T.W.4
-
15
-
-
39749087682
-
Phosphoproteome of resting human platelets
-
Zahedi, R. P., Lewandrowski, U., Wiesner, J., Wortelkamp, S. et al., Phosphoproteome of resting human platelets. J. Proteome Res. 2008, 7, 526-534.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 526-534
-
-
Zahedi, R.P.1
Lewandrowski, U.2
Wiesner, J.3
Wortelkamp, S.4
-
16
-
-
77952671351
-
Proteomics of microparticles after deep venous thrombosis
-
Ramacciotti, E., Hawley, A. E., Wrobleski, S. K., Myers, D. D. et al., Proteomics of microparticles after deep venous thrombosis. Thromb. Res. 2010, 125, e269-274.
-
(2010)
Thromb. Res.
, vol.125
-
-
Ramacciotti, E.1
Hawley, A.E.2
Wrobleski, S.K.3
Myers, D.D.4
-
17
-
-
12144291702
-
Characterization of the proteins released from activated platelets leads to localization of novel platelet proteins in human atherosclerotic lesions
-
Coppinger, J. A., Cagney, G., Toomey, S., Kislinger, T. et al., Characterization of the proteins released from activated platelets leads to localization of novel platelet proteins in human atherosclerotic lesions. Blood 2004, 103, 2096-2104.
-
(2004)
Blood
, vol.103
, pp. 2096-2104
-
-
Coppinger, J.A.1
Cagney, G.2
Toomey, S.3
Kislinger, T.4
-
18
-
-
66749111222
-
Platelet proteome changes associated with diabetes and during platelet storage for transfusion
-
Springer, D. L., Miller, J. H., Spinelli, S. L., Pasa-Tolic, L. et al., Platelet proteome changes associated with diabetes and during platelet storage for transfusion. J. Proteome Res. 2009, 8, 2261-2272.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 2261-2272
-
-
Springer, D.L.1
Miller, J.H.2
Spinelli, S.L.3
Pasa-Tolic, L.4
-
19
-
-
45949106695
-
Development of proteomic signatures for platelet activation using surface-enhanced laser desorption/ionization technology in a clinical setting
-
Yin, W., Czuchlewski, D., Peerschke, E. I., Development of proteomic signatures for platelet activation using surface-enhanced laser desorption/ionization technology in a clinical setting. Am. J. Clin. Pathol. 2008, 129, 862-869.
-
(2008)
Am. J. Clin. Pathol.
, vol.129
, pp. 862-869
-
-
Yin, W.1
Czuchlewski, D.2
Peerschke, E.I.3
-
20
-
-
58149156729
-
A molecular signalling model of platelet phosphoinositide and calcium regulation during homeostasis and P2Y1 activation
-
Purvis, J. E., Chatterjee, M. S., Brass, L. F., Diamond, S. L., A molecular signalling model of platelet phosphoinositide and calcium regulation during homeostasis and P2Y1 activation. Blood 2008, 112, 4069-4079.
-
(2008)
Blood
, vol.112
, pp. 4069-4079
-
-
Purvis, J.E.1
Chatterjee, M.S.2
Brass, L.F.3
Diamond, S.L.4
-
21
-
-
80055002192
-
Time-resolved in silico modeling of fine-tuned cAMP signaling in platelets: feedback loops, titrated phosphorylations and pharmacological modulation
-
Wangorsch, G., Butt, E., Mark, R., Hubertus, K. et al., Time-resolved in silico modeling of fine-tuned cAMP signaling in platelets: feedback loops, titrated phosphorylations and pharmacological modulation. BMC Syst. Biol. 2011, 5, 178.
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 178
-
-
Wangorsch, G.1
Butt, E.2
Mark, R.3
Hubertus, K.4
-
22
-
-
78049416033
-
Systems biology of coagulation initiation: kinetics of thrombin generation in resting and activated human blood
-
Chatterjee, M. S., Denney, W. S., Jing, H., Diamond, S. L., Systems biology of coagulation initiation: kinetics of thrombin generation in resting and activated human blood. PLoS Comput. Biol. 2010, 6, e1000950.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Chatterjee, M.S.1
Denney, W.S.2
Jing, H.3
Diamond, S.L.4
-
23
-
-
27744477157
-
Bridging proteomics and systems biology: what are the roads to be traveled?
-
Souchelnytskyi, S., Bridging proteomics and systems biology: what are the roads to be traveled? Proteomics 2005, 5, 4123-4137.
-
(2005)
Proteomics
, vol.5
, pp. 4123-4137
-
-
Souchelnytskyi, S.1
-
24
-
-
42049115910
-
From proteomics towards systems biology: integration of different types of proteomics data into network models
-
Rho, S., YYou, S., Kim, Y., Hwang, D., From proteomics towards systems biology: integration of different types of proteomics data into network models. BMB Rep. 2008, 41, 184-193.
-
(2008)
BMB Rep.
, vol.41
, pp. 184-193
-
-
Rho, S.1
Yyou, S.2
Kim, Y.3
Hwang, D.4
-
25
-
-
3242746852
-
Functional genomics and proteomics as a foundation for systems biology
-
Aggarwal, K., Lee, K. H., Functional genomics and proteomics as a foundation for systems biology. Brief Funct. Genomic Proteomic 2003, 2, 175-184.
-
(2003)
Brief Funct. Genomic Proteomic
, vol.2
, pp. 175-184
-
-
Aggarwal, K.1
Lee, K.H.2
-
26
-
-
33846102063
-
Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Proteomics approaches to the systems biology of cardiovascular diseases
-
Drake, T. A., Ping, P., Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Proteomics approaches to the systems biology of cardiovascular diseases. J. Lipid Res. 2007, 48, 1-8.
-
(2007)
J. Lipid Res.
, vol.48
, pp. 1-8
-
-
Drake, T.A.1
Ping, P.2
-
27
-
-
84867754221
-
The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways
-
Burkhart, J. M., Vaudel, M., Gambaryan, S., Radau, S. et al., The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways. Blood 2012, 120, e73-e82.
-
(2012)
Blood
, vol.120
-
-
Burkhart, J.M.1
Vaudel, M.2
Gambaryan, S.3
Radau, S.4
-
28
-
-
81855166736
-
Analysis of protein networks in resting and collagen receptor (GPVI)-stimulated platelet sub-proteomes
-
Wright, B., Stanley, R. G., Kaiser, W. J., Mills, D. J. et al., Analysis of protein networks in resting and collagen receptor (GPVI)-stimulated platelet sub-proteomes. Proteomics 2011, 11, 4588-4592.
-
(2011)
Proteomics
, vol.11
, pp. 4588-4592
-
-
Wright, B.1
Stanley, R.G.2
Kaiser, W.J.3
Mills, D.J.4
-
29
-
-
77950364425
-
Identification of cellular MMP substrates using quantitative proteomics: isotope-coded affinity tags (ICAT) and isobaric tags for relative and absolute quantification (iTRAQ)
-
Butler, G. S., Dean, R. A., Morrison, C. J., Overall, C. M., Identification of cellular MMP substrates using quantitative proteomics: isotope-coded affinity tags (ICAT) and isobaric tags for relative and absolute quantification (iTRAQ). Methods Mol. Biol. 2010, 622, 451-470.
-
(2010)
Methods Mol. Biol.
, vol.622
, pp. 451-470
-
-
Butler, G.S.1
Dean, R.A.2
Morrison, C.J.3
Overall, C.M.4
-
30
-
-
35648996400
-
Statistical identification of differentially labeled peptides from liquid chromatography tandem mass spectrometry
-
Cho, H., Smalley, D. M., Theodorescu, D., Ley, K. et al., Statistical identification of differentially labeled peptides from liquid chromatography tandem mass spectrometry. Proteomics 2007, 7, 3681-3692.
-
(2007)
Proteomics
, vol.7
, pp. 3681-3692
-
-
Cho, H.1
Smalley, D.M.2
Theodorescu, D.3
Ley, K.4
-
31
-
-
84864117133
-
Robust workflow for iTRAQ-based peptide and protein quantification
-
Beck, F., Burkhart, J. M., Geiger, J., Zahedi, R. P. et al., Robust workflow for iTRAQ-based peptide and protein quantification. Methods Mol. Biol. 2012, 893, 101-113.
-
(2012)
Methods Mol. Biol.
, vol.893
, pp. 101-113
-
-
Beck, F.1
Burkhart, J.M.2
Geiger, J.3
Zahedi, R.P.4
-
32
-
-
84155167895
-
iTRAQ-based proteomic profiling of human serum reveals down-regulation of platelet basic protein and apolipoprotein B100 in patients with hematoxicity induced by chronic occupational benzene exposure
-
Huang, Z., Wang, H., Huang, H., Xia, L. et al., iTRAQ-based proteomic profiling of human serum reveals down-regulation of platelet basic protein and apolipoprotein B100 in patients with hematoxicity induced by chronic occupational benzene exposure. Toxicology 2012, 291, 56-64.
-
(2012)
Toxicology
, vol.291
, pp. 56-64
-
-
Huang, Z.1
Wang, H.2
Huang, H.3
Xia, L.4
-
33
-
-
84355166576
-
CysTRAQ - a combination of iTRAQ and enrichment of cysteinyl peptides for uncovering and quantifying hidden proteomes
-
Tambor, V., Hunter, C. L., Seymour, S. L., Kacerovsky, M. et al., CysTRAQ - a combination of iTRAQ and enrichment of cysteinyl peptides for uncovering and quantifying hidden proteomes. J. Proteomics 2012, 75, 857-867.
-
(2012)
J. Proteomics
, vol.75
, pp. 857-867
-
-
Tambor, V.1
Hunter, C.L.2
Seymour, S.L.3
Kacerovsky, M.4
-
34
-
-
67649562538
-
Implementation of a data repository-driven approach for targeted proteomics experiments by multiple reaction monitoring
-
Walsh, G. M., Lin, S., Evans, D. M., Khosrovi-Eghbal, A. et al., Implementation of a data repository-driven approach for targeted proteomics experiments by multiple reaction monitoring. J. Proteomics 2009, 72, 838-852.
-
(2009)
J. Proteomics
, vol.72
, pp. 838-852
-
-
Walsh, G.M.1
Lin, S.2
Evans, D.M.3
Khosrovi-Eghbal, A.4
-
35
-
-
79961014854
-
Large-scale phosphosite quantification in tissues by a spike-in SILAC method
-
Monetti, M., Nagaraj, N., Sharma, K., Mann, M., Large-scale phosphosite quantification in tissues by a spike-in SILAC method. Nat. Methods 2011, 8, 655-658.
-
(2011)
Nat. Methods
, vol.8
, pp. 655-658
-
-
Monetti, M.1
Nagaraj, N.2
Sharma, K.3
Mann, M.4
-
36
-
-
80054723147
-
In vivo quantitative proteomics: the SILAC mouse
-
Zanivan, S., Krueger, M., Mann, M., In vivo quantitative proteomics: the SILAC mouse. Methods Mol. Biol. 2012, 757, 435-450.
-
(2012)
Methods Mol. Biol.
, vol.757
, pp. 435-450
-
-
Zanivan, S.1
Krueger, M.2
Mann, M.3
-
37
-
-
47549099572
-
SILAC mouse for quantitative proteomics uncovers kindling-3 as an essential factor for red blood cell function
-
Kruger, M., Moser, M., Ussar, S., Thievessen, I. et al., SILAC mouse for quantitative proteomics uncovers kindling-3 as an essential factor for red blood cell function. Cell 2008, 134, 353-364.
-
(2008)
Cell
, vol.134
, pp. 353-364
-
-
Kruger, M.1
Moser, M.2
Ussar, S.3
Thievessen, I.4
-
38
-
-
42649132889
-
Stable isotope labeling by amino acids in cell culture (SILAC) an proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins
-
Graumann, J., Hubner, N. C., Kim, J. B., Moser, M. et al., Stable isotope labeling by amino acids in cell culture (SILAC) an proteome quantitation of mouse embryonic stem cells to a depth of 5, 111 proteins. Mol. Cell Proteomics 2008, 7, 672-683.
-
(2008)
Mol. Cell Proteomics
, vol.7
, pp. 672-683
-
-
Graumann, J.1
Hubner, N.C.2
Kim, J.B.3
Moser, M.4
-
39
-
-
79551663189
-
Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics
-
Geiger, T., Wisniewski, J. R., Cox, J., Zanivan, S. et al., Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics. Nat. Protoc. 2011, 6, 147-157.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 147-157
-
-
Geiger, T.1
Wisniewski, J.R.2
Cox, J.3
Zanivan, S.4
-
40
-
-
80855154135
-
A protein epitope signature tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines
-
Zeiler, M., Straube, W. L., Lundberg, E., Uhlen, M. et al., A protein epitope signature tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines. Mol. Cell Proteomics 2012, 11, O111.009613.
-
(2012)
Mol. Cell Proteomics
, vol.11
-
-
Zeiler, M.1
Straube, W.L.2
Lundberg, E.3
Uhlen, M.4
-
41
-
-
0036583926
-
Stable isotope labeling of amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B. et al., Stable isotope labeling of amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell Proteomics 2002, 1, 376-386.
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
-
42
-
-
70349621112
-
Systems-wide analysis of a phosphatases knock-down by quantitative proteomics and phosphoproteomics
-
Hilger, M., Bonaldi, T., Gnad, F., Mann, M., Systems-wide analysis of a phosphatases knock-down by quantitative proteomics and phosphoproteomics. Mol. Cell Proteomics 2009, 8, 1908-1920.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 1908-1920
-
-
Hilger, M.1
Bonaldi, T.2
Gnad, F.3
Mann, M.4
-
43
-
-
33745591083
-
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system
-
De Godoy, L. M., Olsen, J. V., de Souza, G. A., Li, G. et al., Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. Genome Biol. 2006, 7, R50.
-
(2006)
Genome Biol.
, vol.7
-
-
De Godoy, L.M.1
Olsen, J.V.2
de Souza, G.A.3
Li, G.4
-
44
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
Old, W. M., Meyer-Arendt, K., Aveline-Wolf, L., Pierce, K. G. et al., Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol. Cell Proteomics 2005, 4, 1487-1502.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1487-1502
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
Pierce, K.G.4
-
45
-
-
33751340274
-
Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics
-
Hendrickson, E. L., Xia, Q., Wang, T., Leigh, J. A. et al., Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics. Analyst 2006, 131, 1335-1341.
-
(2006)
Analyst
, vol.131
, pp. 1335-1341
-
-
Hendrickson, E.L.1
Xia, Q.2
Wang, T.3
Leigh, J.A.4
-
46
-
-
0036674269
-
Large-scale proteomic analysis of the human spliceosome
-
Rappsilber, J., Ryder, U., Lamond, A. I., Mann, M., Large-scale proteomic analysis of the human spliceosome. Genome Res. 2002, 12, 1231-1245.
-
(2002)
Genome Res.
, vol.12
, pp. 1231-1245
-
-
Rappsilber, J.1
Ryder, U.2
Lamond, A.I.3
Mann, M.4
-
47
-
-
67649511917
-
Isotope dilution strategies for absolute quantitative proteomics
-
Brun, V., Masselon, C., Garin, J., Dupuis, A., Isotope dilution strategies for absolute quantitative proteomics. J. Proteomics 2009, 72, 740-749.
-
(2009)
J. Proteomics
, vol.72
, pp. 740-749
-
-
Brun, V.1
Masselon, C.2
Garin, J.3
Dupuis, A.4
-
48
-
-
26844559000
-
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
-
Ishihama, Y., Oda, Y., Tabata, T., Sato, T. et al., Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol. Cell Proteomics 2005, 4, 1265-1272.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1265-1272
-
-
Ishihama, Y.1
Oda, Y.2
Tabata, T.3
Sato, T.4
-
49
-
-
84864117768
-
Label-free protein quantitation using weighted spectral counting
-
Vogel, C., Marcotte, E. M., Label-free protein quantitation using weighted spectral counting. Methods Mol. Biol. 2012, 893, 321-341.
-
(2012)
Methods Mol. Biol.
, vol.893
, pp. 321-341
-
-
Vogel, C.1
Marcotte, E.M.2
-
50
-
-
79955463624
-
An integrated proteomics and genomics analysis to unravel a heterogeneous platelet secretion defect
-
Di Michele, M., Thys, C., Waelkens, E., Overbergh, L. et al., An integrated proteomics and genomics analysis to unravel a heterogeneous platelet secretion defect. J. Proteomics 2011, 74, 902-913.
-
(2011)
J. Proteomics
, vol.74
, pp. 902-913
-
-
Di Michele, M.1
Thys, C.2
Waelkens, E.3
Overbergh, L.4
-
51
-
-
55849152071
-
Proteomic analysis of the porcine platelet proteome and alterations induced by thrombin activation
-
Esteso, G., Mora, M. I., Garrido, J. J., Corrales, F. F. et al., Proteomic analysis of the porcine platelet proteome and alterations induced by thrombin activation. J. Proteomics 2008, 71, 547-560.
-
(2008)
J. Proteomics
, vol.71
, pp. 547-560
-
-
Esteso, G.1
Mora, M.I.2
Garrido, J.J.3
Corrales, F.F.4
-
52
-
-
67651056213
-
Platelet membrane proteomics: a novel repository for functional research
-
Lewandrowski, U., Wortelkamp, S., Lohrig, K., Zahedi, R. P. et al., Platelet membrane proteomics: a novel repository for functional research. Blood 2009, 114, e10-e19.
-
(2009)
Blood
, vol.114
-
-
Lewandrowski, U.1
Wortelkamp, S.2
Lohrig, K.3
Zahedi, R.P.4
-
53
-
-
27844559478
-
The human platelet membrane proteome reveals several new potential membrane proteins
-
Moebius, J., Zahedi, R. P., Lewandrowski, U., Berger, C. et al., The human platelet membrane proteome reveals several new potential membrane proteins. Mol. Cell Proteomics, 2005 4, 1754-1761.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1754-1761
-
-
Moebius, J.1
Zahedi, R.P.2
Lewandrowski, U.3
Berger, C.4
-
54
-
-
34548076553
-
Proteomic analysis of platelha-granules using mass spectrometry
-
Maynard, D. M., Heijnen, H. F., Horne, M. K., White, J. G. et al., Proteomic analysis of platelet alpha-granules using mass spectrometry. J. Thromb. Haemost. 2007, 5, 1945-1955.
-
(2007)
J. Thromb. Haemost.
, vol.5
, pp. 1945-1955
-
-
Maynard, D.M.1
Heijnen, H.F.2
Horne, M.K.3
White, J.G.4
-
55
-
-
36348952677
-
Organellar proteomics of human platelet dense granules reveals that 14-3-3δ is a granule protein related to atherosclerosis
-
Hernandez-Ruiz, L., Valverde, F., Jimenez-Nunez, M. D., Ocana, E. et al., Organellar proteomics of human platelet dense granules reveals that 14-3-3δ is a granule protein related to atherosclerosis. J. Proteome Res. 2007, 6, 4449-4457.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 4449-4457
-
-
Hernandez-Ruiz, L.1
Valverde, F.2
Jimenez-Nunez, M.D.3
Ocana, E.4
-
56
-
-
60649102218
-
Proteomics of the TRAP-induced platelet releasate
-
Piersma, S. R., Broxterman, H. J., Kapci, M., de Haas, R. R. et al., Proteomics of the TRAP-induced platelet releasate. J. Proteomics 2009, 72, 91-109.
-
(2009)
J. Proteomics
, vol.72
, pp. 91-109
-
-
Piersma, S.R.1
Broxterman, H.J.2
Kapci, M.3
de Haas, R.R.4
-
57
-
-
38949168230
-
Comparison of the human platelet membrane-cytoskeletal proteins with the plasma proteome: towards understanding the platelet-plasma nexus
-
Greening, D. W., Glenister, K. M., Kapp, E. A., Moritz, R. L. et al., Comparison of the human platelet membrane-cytoskeletal proteins with the plasma proteome: towards understanding the platelet-plasma nexus. Proteomics Clin. Appl. 2008, 2, 63-77.
-
(2008)
Proteomics Clin. Appl.
, vol.2
, pp. 63-77
-
-
Greening, D.W.1
Glenister, K.M.2
Kapp, E.A.3
Moritz, R.L.4
-
58
-
-
70349912263
-
False discovery rates of protein identifications: a strike against the two-peptide rule
-
Gupta, N., Pevzner, P. A., False discovery rates of protein identifications: a strike against the two-peptide rule. J. Proteome Res. 2009, 8, 4173-4181.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 4173-4181
-
-
Gupta, N.1
Pevzner, P.A.2
-
59
-
-
61649116613
-
An assessment of false discovery rates and statistical significance in label-free quantitative proteomics with combined filters
-
Li, Q., Roxas, B. A., An assessment of false discovery rates and statistical significance in label-free quantitative proteomics with combined filters. BMC Bioinform. 2009, 10, 43.
-
(2009)
BMC Bioinform.
, vol.10
, pp. 43
-
-
Li, Q.1
Roxas, B.A.2
-
60
-
-
34250722602
-
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
-
Wolf-Yadlin, A., Hautaniemi, S., Lauffenburger, D. A., White, F. M., Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc. Natl. Acad. Sci. USA 2007, 104, 5860-5865.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 5860-5865
-
-
Wolf-Yadlin, A.1
Hautaniemi, S.2
Lauffenburger, D.A.3
White, F.M.4
-
61
-
-
4444371652
-
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
-
Blagoev, B., Ong, S. E., Kratchmarova, I., Mann, M., Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat. Biotechnol. 2004, 22, 1139-1145.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1139-1145
-
-
Blagoev, B.1
Ong, S.E.2
Kratchmarova, I.3
Mann, M.4
-
62
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J. V., Blagoev, B., Gnad, F., Macel, B. et al., Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127, 635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macel, B.4
-
63
-
-
84856635802
-
Triple SILAC to determine stimulus specific interactions in the Wnt pathway
-
Hilger, M., Mann, M., Triple SILAC to determine stimulus specific interactions in the Wnt pathway. J. Proteome Res. 2012, 11, 982-994.
-
(2012)
J. Proteome Res.
, vol.11
, pp. 982-994
-
-
Hilger, M.1
Mann, M.2
-
64
-
-
70350015034
-
Proteomic analysis of integrin alphaIIbbeta3 outside-in signaling reveals Src-kinase-independent phosphorylation of Dok-1 and Dok-3 leading to SHIP-1 interactions
-
Senis, Y. A., Antrobus, R., Severin, S., Parguina, A. F. et al., Proteomic analysis of integrin alphaIIbbeta3 outside-in signaling reveals Src-kinase-independent phosphorylation of Dok-1 and Dok-3 leading to SHIP-1 interactions. J. Thromb. Haemost. 2009, 7, 1718-1726.
-
(2009)
J. Thromb. Haemost.
, vol.7
, pp. 1718-1726
-
-
Senis, Y.A.1
Antrobus, R.2
Severin, S.3
Parguina, A.F.4
-
65
-
-
46249107372
-
Platelet protein interactions: map, signaling components, and phosphorylation groundstate
-
Dittrich, M., Birschmann, I., Mietner, S., Sickmann, A. et al., Platelet protein interactions: map, signaling components, and phosphorylation groundstate. Arterioscler. Thromb. Vasc. Biol. 2008, 28, 1326-1331.
-
(2008)
Arterioscler. Thromb. Vasc. Biol.
, vol.28
, pp. 1326-1331
-
-
Dittrich, M.1
Birschmann, I.2
Mietner, S.3
Sickmann, A.4
-
66
-
-
0035987473
-
Identification of the phosphotyrosine proteome from thrombin activated platelets
-
Maguire, P. B., Wynne, K. J., Harney, D. F., O'Donoghue, N. M., Identification of the phosphotyrosine proteome from thrombin activated platelets. Proteomics 2002, 2, 642-648.
-
(2002)
Proteomics
, vol.2
, pp. 642-648
-
-
Maguire, P.B.1
Wynne, K.J.2
Harney, D.F.3
O'Donoghue, N.M.4
-
67
-
-
70449589285
-
Proteomic and phosphoproteomic profile of human platelets in basal, resting state: insights into integrin signaling
-
Qureshi, A. H., Chaoji, V., Maiguel, D., Faridi, M. H. et al., Proteomic and phosphoproteomic profile of human platelets in basal, resting state: insights into integrin signaling. PLoS One 2009, 4, e7627.
-
(2009)
PLoS One
, vol.4
-
-
Qureshi, A.H.1
Chaoji, V.2
Maiguel, D.3
Faridi, M.H.4
-
68
-
-
36348967804
-
Exploring the platelet proteome via combinatorial, hexapeptide ligand libraries
-
Guerrier, L., Claverol, S., Fortis, F., Rinalducci, S. et al., Exploring the platelet proteome via combinatorial, hexapeptide ligand libraries. J. Proteome Res. 2007, 6, 4290-4303.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 4290-4303
-
-
Guerrier, L.1
Claverol, S.2
Fortis, F.3
Rinalducci, S.4
-
69
-
-
33748533496
-
Reconstructing protein complexes: from proteomics to systems biology
-
Armstrong, J. D., Pocklington, A. J., Cumiskey, M. A., Grant, S. G., Reconstructing protein complexes: from proteomics to systems biology. Proteomics 2006, 6, 4724-4731.
-
(2006)
Proteomics
, vol.6
, pp. 4724-4731
-
-
Armstrong, J.D.1
Pocklington, A.J.2
Cumiskey, M.A.3
Grant, S.G.4
-
70
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong, H., Mason, S. P., Barabasi, A. L., Oltvai, Z. N., Lethality and centrality in protein networks. Nature 2001, 411, 41-42.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.L.3
Oltvai, Z.N.4
-
71
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong, H., Tombor, B., Albert, R., Oltvai, Z. N. et al., The large-scale organization of metabolic networks. Nature 2000, 407, 651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
-
72
-
-
33845585832
-
Systems biology approaches to metabolic and cardiovascular disorders: network perspectives of cardiovascular metabolism
-
Weiss, J. N., Yang, L., Qu, Z., Systems biology approaches to metabolic and cardiovascular disorders: network perspectives of cardiovascular metabolism. J. Lipid Res. 2006, 47, 2355-2366.
-
(2006)
J. Lipid Res.
, vol.47
, pp. 2355-2366
-
-
Weiss, J.N.1
Yang, L.2
Qu, Z.3
-
73
-
-
33947103658
-
A curated compendium of phosphorylation motifs
-
Amanchy, R., Periaswamy, B., Mathivanan, S., Reddy, R. et al., A curated compendium of phosphorylation motifs. Nat. Biotechnol. 2007, 25, 285-286.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 285-286
-
-
Amanchy, R.1
Periaswamy, B.2
Mathivanan, S.3
Reddy, R.4
-
74
-
-
34547606042
-
Functional atlas of the integrin adhesome
-
Zaidel-Bar, R., Itzkovitz, S., Ma'ayan, A., Iyengar, R. et al., Functional atlas of the integrin adhesome. Nat. Cell Biol. 2007, 9, 858-867.
-
(2007)
Nat. Cell Biol.
, vol.9
, pp. 858-867
-
-
Zaidel-Bar, R.1
Itzkovitz, S.2
Ma'ayan, A.3
Iyengar, R.4
-
75
-
-
10044246957
-
-
Springer, Berlin
-
Batagelj, V., Mrvar, A., Graph Drawing Software. Springer, Berlin. 2003, pp. 77-103.
-
(2003)
Graph Drawing Software
, pp. 77-103
-
-
Batagelj, V.1
Mrvar, A.2
-
76
-
-
22944455558
-
Biolayout(Java): versatile network visualisation of structural and functional relationships
-
Goldovsky, L., Cases, I., Enright, A. J., Ouzounis, C. A., Biolayout(Java): versatile network visualisation of structural and functional relationships. Appl. Bioinform. 2005, 4, 71-74.
-
(2005)
Appl. Bioinform.
, vol.4
, pp. 71-74
-
-
Goldovsky, L.1
Cases, I.2
Enright, A.J.3
Ouzounis, C.A.4
-
77
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S. et al., Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003, 13, 2498-2504
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
-
78
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader, G. D., Hogue, C. W., An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinform. 2003, 4, 2.
-
(2003)
BMC Bioinform.
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
79
-
-
0141703595
-
CD226 mediates platelet and megakaryocytic cell adhesion to vascular endothelial cells
-
Kojima, H., Kanada, H., Shimizu, S., Kasama, E. et al., CD226 mediates platelet and megakaryocytic cell adhesion to vascular endothelial cells. J. Biol. Chem. 2003, 278, 36748-36753.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 36748-36753
-
-
Kojima, H.1
Kanada, H.2
Shimizu, S.3
Kasama, E.4
-
80
-
-
0033229832
-
Physical and functional association of LFA-1 with DNAM-1 adhesion molecule
-
Shibuya, K., Lanier, L. L., Phillips, J. H., OOchs, H. D. et al., Physical and functional association of LFA-1 with DNAM-1 adhesion molecule. Immunity 1999, 11, 615-623.
-
(1999)
Immunity
, vol.11
, pp. 615-623
-
-
Shibuya, K.1
Lanier, L.L.2
Phillips, J.H.3
Oochs, H.D.4
-
81
-
-
84856077072
-
PlateletWeb: a systems biologic analysis of signaling networks in human platelets
-
Boyanova, D., Nilla, S., Birschmann, I., Dandekar, T. et al., PlateletWeb: a systems biologic analysis of signaling networks in human platelets. Blood 2012, 119, e22-e34.
-
(2012)
Blood
, vol.119
-
-
Boyanova, D.1
Nilla, S.2
Birschmann, I.3
Dandekar, T.4
-
82
-
-
57149093203
-
FKBP family proteins: immunophilins with versatile biological functions
-
Kang, C. B., Hong, Y., Dhe-Paganon, S., Yoon, H. S., FKBP family proteins: immunophilins with versatile biological functions. Neurosignals 2008, 16, 318-325.
-
(2008)
Neurosignals
, vol.16
, pp. 318-325
-
-
Kang, C.B.1
Hong, Y.2
Dhe-Paganon, S.3
Yoon, H.S.4
-
83
-
-
72449196261
-
Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics
-
Pan, C., Olsen, J. V., Daub, H., Mann, M., Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics. Mol. Cell Proteomics 2009, 8, 2796-2808.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 2796-2808
-
-
Pan, C.1
Olsen, J.V.2
Daub, H.3
Mann, M.4
-
84
-
-
0037079054
-
Computational systems biology
-
Kitano, H., Computational systems biology. Nature 2002, 420, 206-210.
-
(2002)
Nature
, vol.420
, pp. 206-210
-
-
Kitano, H.1
-
85
-
-
0036941857
-
Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology
-
Kitano, H., Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology. Curr. Genet. 2002, 41, 1-10.
-
(2002)
Curr. Genet.
, vol.41
, pp. 1-10
-
-
Kitano, H.1
-
86
-
-
79959261897
-
Collagen stimulation of platelets induces a rapid spatial response of cAMP and cGMP signaling scaffolds
-
Margarucci, L., Roest, M., Preisinger, C., Bleijerveld, O. B. et al., Collagen stimulation of platelets induces a rapid spatial response of cAMP and cGMP signaling scaffolds. Mol. Biosyst. 2011, 7, 2311-2319.
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 2311-2319
-
-
Margarucci, L.1
Roest, M.2
Preisinger, C.3
Bleijerveld, O.B.4
-
87
-
-
84869435404
-
Meeting report signal transduction meets systems biology
-
Louis-Dit-Sully, C., Kubatzky, K. F., Lindquist, J. A., Blattner, C. et al., Meeting report signal transduction meets systems biology. Cell Commun. Signal 2012, 10, 11.
-
(2012)
Cell Commun. Signal
, vol.10
, pp. 11
-
-
Louis-Dit-Sully, C.1
Kubatzky, K.F.2
Lindquist, J.A.3
Blattner, C.4
-
88
-
-
79951558905
-
Modelling the Delta1/Notch1 pathway: in search of the mediator(s) of neural stem cell differentiation
-
Kiparissides, A., Koutinas, M., Moss, T., Newman, J. et al., Modelling the Delta1/Notch1 pathway: in search of the mediator(s) of neural stem cell differentiation. PLosOne 2011, 6, e14668.
-
(2011)
PLosOne
, vol.6
-
-
Kiparissides, A.1
Koutinas, M.2
Moss, T.3
Newman, J.4
-
89
-
-
84867353456
-
A systems biology approach to identify the signalling network regulated by Rho-GDI-γ during neural stem cell differentiation
-
Wang, J., Hu, F., Cheng, H., Zhao, X. M. et al., A systems biology approach to identify the signalling network regulated by Rho-GDI-γ during neural stem cell differentiation. Mol. Biosyst. 2012, 8, 2916-2923.
-
(2012)
Mol. Biosyst.
, vol.8
, pp. 2916-2923
-
-
Wang, J.1
Hu, F.2
Cheng, H.3
Zhao, X.M.4
-
90
-
-
4644335402
-
Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalised medicine
-
Weston, A. D., Hood, L., Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalised medicine. J. Proteome Res. 2004, 3, 179-196.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 179-196
-
-
Weston, A.D.1
Hood, L.2
-
91
-
-
59349083179
-
Mechanisms of drug combinations: interaction and network perspectives
-
Jia, J., Zhu, F., Ma, X., Cao, Z. et al., Mechanisms of drug combinations: interaction and network perspectives. Nat. Rev. Drug Discov. 2009, 8, 111-128.
-
(2009)
Nat. Rev. Drug Discov.
, vol.8
, pp. 111-128
-
-
Jia, J.1
Zhu, F.2
Ma, X.3
Cao, Z.4
-
92
-
-
82755190457
-
A systems-based mathematical modeling framework for investigating the effect of drugs on solid tumours
-
Liu, C., Krishnan, J., Xu, X. Y., A systems-based mathematical modeling framework for investigating the effect of drugs on solid tumours. Theor. Biol. Med. Model. 2011, 8, 45.
-
(2011)
Theor. Biol. Med. Model.
, vol.8
, pp. 45
-
-
Liu, C.1
Krishnan, J.2
Xu, X.Y.3
|